Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 4.5e-89 331.3 171 100.0
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 1.2e-78 296.6 174 91.4
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 4.4e-68 261.5 174 81.6
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 4.9e-67 258.1 174 80.5
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 6.4e-67 257.7 172 79.1
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 1.0e-64 250.4 176 76.7
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 2.3e-64 249.2 172 75.0
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 2.3e-64 249.2 172 75.0
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 8.6e-64 247.3 176 74.4
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 8.6e-64 247.3 176 74.4
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 1.5e-63 246.5 172 74.4
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 1.9e-63 246.1 176 75.0
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 1.9e-63 246.1 176 75.0
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 3.3e-63 245.4 172 73.8
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 5.6e-63 244.6 172 72.7
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 3.1e-61 238.8 169 75.7
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 6.8e-61 237.7 172 72.7
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 8.3e-59 230.7 169 73.4
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 7.1e-58 227.6 170 71.8
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 3.9e-48 195.3 119 83.2
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 1.2e-46 190.3 171 61.4
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 1.1e-45 187.2 172 62.2
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 2.3e-40 169.5 181 51.4
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 8.7e-40 167.5 180 50.0
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 1.9e-39 166.4 182 50.0
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 3.3e-39 165.6 181 53.0
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 1.4e-37 160.2 172 47.7
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 6.9e-37 157.9 180 47.8
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 6.9e-37 157.9 181 51.4
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 6.9e-37 157.9 173 51.4
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 2.0e-36 156.4 180 48.3
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 2.6e-36 156.0 180 48.9
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 2.6e-36 156.0 180 47.8
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 5.8e-36 154.8 170 48.8
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 1.7e-35 153.3 174 51.7
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 3.8e-35 152.1 180 46.7
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 6.4e-35 151.4 176 48.3
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 6.4e-35 151.4 176 47.7
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 8.4e-35 151.0 175 50.3
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 8.4e-35 151.0 182 47.8
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 1.4e-34 150.2 182 46.7
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 1.9e-34 149.8 178 48.3
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 2.4e-34 149.4 180 46.7
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 3.2e-34 149.1 179 46.9
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 5.4e-34 148.3 173 50.3
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 5.4e-34 148.3 182 46.2
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 9.3e-34 147.5 177 48.0
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 9.3e-34 147.5 177 48.6
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 2.7e-33 146.0 178 46.6
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 2.7e-33 146.0 182 44.5
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 2.7e-33 146.0 182 47.3
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 2.7e-33 146.0 182 47.3
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 2.7e-33 146.0 181 46.4
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 3.5e-33 145.6 182 46.7
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 4.6e-33 145.2 182 46.2
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 7.8e-33 144.4 176 47.7
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 7.8e-33 144.4 179 44.7
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 1.0e-32 144.1 182 45.6
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 1.0e-32 144.1 166 48.2
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 1.0e-32 144.1 181 46.4
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 1.3e-32 143.7 182 45.6
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 1.3e-32 143.7 181 46.4
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 1.7e-32 143.3 173 47.4
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 1.7e-32 143.3 181 47.0
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 1.7e-32 143.3 178 47.8
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 2.3e-32 142.9 176 47.7
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 3.9e-32 142.1 171 48.5
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 5.1e-32 141.7 172 48.8
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 6.6e-32 141.4 170 45.3
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 6.6e-32 141.4 181 44.8
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 8.7e-32 141.0 174 47.1
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 8.7e-32 141.0 182 45.6
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.1e-31 140.6 181 47.5
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 1.5e-31 140.2 182 45.6
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 1.5e-31 140.2 171 47.4
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 1.9e-31 139.8 171 47.4
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 1.9e-31 139.8 182 46.2
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 1.9e-31 139.8 178 46.1
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 3.3e-31 139.0 181 45.3
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 4.3e-31 138.7 181 46.4
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 4.3e-31 138.7 171 44.4
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 5.6e-31 138.3 170 44.7
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 5.6e-31 138.3 182 44.5
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 1.3e-30 137.1 173 46.8
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 1.3e-30 137.1 177 45.2
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 1.3e-30 137.1 182 43.4
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 1.3e-30 137.1 182 43.4
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 1.6e-30 136.7 178 43.3
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 1.6e-30 136.7 182 45.6
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 1.6e-30 136.7 173 44.5
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 2.1e-30 136.3 170 47.1
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 2.1e-30 136.3 173 45.1
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 2.8e-30 136.0 178 43.8
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 4.8e-30 135.2 181 46.4
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 4.8e-30 135.2 163 46.0
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 6.2e-30 134.8 180 43.9
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 1.4e-29 133.7 182 44.0
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 1.4e-29 133.7 167 45.5
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 1.8e-29 133.3 161 46.0
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 2.4e-29 132.9 162 46.3
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 2.4e-29 132.9 163 46.0
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 4.0e-29 132.1 175 43.4
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 4.0e-29 132.1 175 42.3
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 4.0e-29 132.1 174 44.3
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 5.3e-29 131.7 170 47.1
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 6.9e-29 131.3 164 47.6
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.2e-28 130.6 181 46.4
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 1.5e-28 130.2 166 44.6
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 2.0e-28 129.8 170 42.4
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 2.6e-28 129.4 167 43.7
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 5.8e-28 128.3 181 43.1
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 7.6e-28 127.9 165 45.5
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 9.9e-28 127.5 166 44.6
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 1.7e-27 126.7 170 45.3
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 2.9e-27 125.9 171 42.7
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 3.8e-27 125.6 173 43.9
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 3.8e-27 125.6 164 43.9
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 1.1e-26 124.0 175 40.6
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 3.2e-26 122.5 115 53.0
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 1.0e-24 117.5 180 42.2
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 3.0e-24 115.9 169 42.6
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 8.7e-24 114.4 144 46.5
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 8.7e-24 114.4 181 42.0
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 2.8e-22 109.4 162 40.7
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 3.7e-22 109.0 163 39.3
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 2.6e-20 102.8 174 39.7
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 3.4e-20 102.4 179 40.8
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 1.3e-16 90.5 178 37.1
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 1.4e-13 80.5 172 33.1
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 1.0e-11 74.3 181 28.7
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 2.2e-11 73.2 114 45.6
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 6.1e-09 65.1 173 27.2
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 3.3e-07 59.3 89 34.8


User provided reference genes

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