Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 2.9e-171 605.1 310 100.0
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 3.0e-155 552.0 304 95.4
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 2.8e-153 545.4 300 92.3
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 2.6e-151 538.9 301 92.0
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 1.2e-143 513.5 301 87.0
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 6.6e-139 497.7 304 87.5
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 1.4e-136 490.0 306 84.6
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 1.4e-136 490.0 306 84.6
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 1.8e-136 489.6 307 84.4
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 8.7e-123 444.1 277 80.5
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 7.6e-119 431.0 295 76.6
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 5.5e-117 424.9 277 74.4
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 2.1e-116 422.9 272 75.0
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 6.0e-116 421.4 274 76.3
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 3.0e-115 419.1 294 71.8
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 1.9e-114 416.4 305 70.5
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 2.5e-114 416.0 267 76.0
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 9.6e-114 414.1 269 75.1
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 9.6e-114 414.1 298 72.1
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 1.3e-113 413.7 300 70.7
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 1.3e-113 413.7 267 75.3
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 2.8e-113 412.5 271 75.3
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 2.8e-113 412.5 268 75.4
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 8.2e-113 411.0 280 75.0
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 2.4e-112 409.5 296 70.6
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 3.1e-112 409.1 261 81.2
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 3.1e-112 409.1 306 69.6
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 4.0e-112 408.7 296 70.3
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 4.0e-112 408.7 269 74.7
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 5.3e-112 408.3 267 73.8
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 5.3e-112 408.3 267 74.5
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 5.3e-112 408.3 296 70.9
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 6.9e-112 407.9 269 73.6
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 9.0e-112 407.5 264 76.9
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 9.0e-112 407.5 268 76.1
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 1.2e-111 407.1 270 74.8
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 1.2e-111 407.1 276 74.3
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 1.2e-111 407.1 267 74.9
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.2e-111 407.1 295 70.5
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.2e-111 407.1 295 70.5
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 1.5e-111 406.8 285 71.9
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 2.0e-111 406.4 295 69.5
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 1.3e-110 403.7 304 67.4
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 1.7e-110 403.3 273 72.2
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 1.7e-110 403.3 265 71.7
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 1.7e-110 403.3 263 74.9
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 2.2e-110 402.9 283 70.7
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 6.5e-110 401.4 287 67.2
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 6.5e-110 401.4 323 65.6
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 8.4e-110 401.0 265 72.8
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 1.4e-109 400.2 267 74.2
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 2.5e-109 399.4 312 66.0
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 2.5e-109 399.4 265 73.6
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 4.2e-109 398.7 270 74.8
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 5.5e-109 398.3 306 67.6
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 7.1e-109 397.9 269 72.1
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 3.5e-108 395.6 258 75.2
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 1.0e-107 394.0 260 73.1
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 1.3e-107 393.7 292 67.5
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.8e-107 393.3 266 72.9
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.3e-107 392.9 296 67.6
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 2.3e-107 392.9 296 67.6
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 5.1e-107 391.7 292 67.1
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 6.7e-107 391.3 294 67.7
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.5e-106 390.2 266 72.6
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 2.5e-106 389.4 263 70.0
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 5.7e-106 388.3 267 71.5
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 7.4e-106 387.9 271 68.3
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.3e-105 387.1 267 71.5
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 1.6e-105 386.7 268 70.9
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 2.8e-105 386.0 265 72.1
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 4.8e-105 385.2 292 66.8
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 1.1e-104 384.0 280 70.0
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 1.4e-104 383.6 315 62.2
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 3.1e-104 382.5 267 70.8
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-103 380.6 229 79.9
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 1.7e-102 376.7 268 70.1
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 1.7e-102 376.7 268 70.1
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 5.0e-102 375.2 292 66.4
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 1.9e-101 373.2 276 65.9
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 3.2e-101 372.5 348 58.6
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 1.6e-100 370.2 270 66.7
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 3.6e-100 369.0 317 60.3
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 7.9e-100 367.9 232 77.2
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 1.0e-99 367.5 269 65.8
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 1.8e-99 366.7 262 67.2
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 8.7e-99 364.4 237 74.3
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 1.5e-98 363.6 232 74.6
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 1.9e-98 363.2 268 66.0
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 4.3e-98 362.1 230 75.7
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 5.7e-98 361.7 264 66.7
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 6.3e-97 358.2 276 67.0
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 1.1e-96 357.5 378 52.6
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 1.1e-96 357.5 268 64.9
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 1.8e-96 356.7 229 74.2
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 2.9e-94 349.4 279 62.4
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 5.7e-90 335.1 249 70.3
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.7e-86 323.6 195 77.9
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 2.2e-86 323.2 207 85.0
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.5e-86 321.2 236 68.6
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 6.7e-83 311.6 246 59.3
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 1.2e-79 300.8 272 53.3
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 8.5e-78 294.7 211 71.6
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 1.9e-77 293.5 298 52.7
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 1.8e-75 287.0 219 67.1
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 4.5e-71 272.3 196 63.8
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 6.5e-70 268.5 224 65.2
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 9.4e-69 264.6 204 73.0
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 2.7e-68 263.1 220 63.2
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 2.3e-67 260.0 170 81.2
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 7.5e-66 255.0 199 66.8
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-65 253.4 157 79.6
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 2.4e-64 250.0 232 61.6
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 1.1e-61 241.1 190 68.9
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 3.3e-61 239.6 263 57.4
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 3.1e-56 223.0 130 82.3
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 5.4e-56 222.2 195 55.9
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-47 194.5 157 66.9
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 2.7e-47 193.4 142 75.4
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 3.5e-47 193.0 156 67.3
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 6.0e-47 192.2 157 66.9
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-46 191.4 206 53.9
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-46 190.7 173 61.8
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-45 187.6 156 66.0
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-45 187.6 208 54.3
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-45 187.6 157 66.9
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.2e-44 184.5 130 64.6
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 6.2e-44 182.2 158 63.3
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 9.2e-40 168.3 144 64.6
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-38 163.7 208 50.5
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 2.5e-37 160.2 98 81.6
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 1.8e-35 154.1 99 78.8
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-35 153.7 107 75.7
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-35 153.7 160 56.9
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-35 153.7 160 56.9
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 6.8e-35 152.1 125 65.6
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 6.8e-35 152.1 167 53.3
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-34 151.4 94 83.0
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 2.0e-34 150.6 175 54.3
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 2.4e-32 143.7 332 32.2
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.7e-30 137.5 88 71.6
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-27 128.3 188 46.8
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 8.9e-27 125.2 109 62.4
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-23 114.4 132 50.8
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 6.6e-22 109.0 70 80.0
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 8.7e-22 108.6 73 67.1
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 2.6e-18 97.1 89 60.7
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 5.8e-18 95.9 96 56.2
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 2.2e-17 94.0 56 78.6
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 2.2e-17 94.0 57 77.2
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 1.7e-09 67.8 110 39.1
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.4e-08 64.7 148 32.4
arahy.Tifrunner.gnm1.ann1.54H2MY Arachis hypogaea HOM05D001155 ORTHO05D015979 5.1e-06 56.2 43 62.8


User provided reference genes

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