Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 3.3e-176 622.1 444 100.0
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 4.0e-137 492.3 445 72.6
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 1.3e-135 487.3 458 74.9
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 9.2e-134 481.1 444 78.8
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 3.9e-132 475.7 445 71.7
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 3.6e-130 469.2 445 67.9
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 8.3e-127 458.0 449 70.2
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 7.0e-126 454.9 471 64.1
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 1.3e-124 450.7 445 66.3
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 2.3e-124 449.9 471 66.9
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 9.9e-120 434.5 449 62.8
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 9.9e-120 434.5 449 62.8
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 7.1e-118 428.3 449 65.0
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 2.1e-117 426.8 446 66.8
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 2.8e-98 363.2 453 58.5
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 4.8e-98 362.5 465 60.2
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 3.3e-91 339.7 382 59.9
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 2.1e-85 320.5 462 49.1
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 4.0e-81 306.2 385 56.4
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 5.1e-76 289.3 467 51.0
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 1.1e-75 288.1 440 51.1
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 5.7e-75 285.8 460 42.2
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 1.3e-74 284.6 483 57.6
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 1.6e-74 284.3 448 43.5
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 3.1e-73 280.0 454 59.3
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 3.1e-73 280.0 459 41.4
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 9.0e-73 278.5 432 61.3
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 3.4e-72 276.6 460 59.8
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 7.7e-72 275.4 456 42.3
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.0e-71 275.0 456 41.7
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.0e-71 275.0 452 61.5
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 2.9e-71 273.5 450 41.1
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 3.8e-71 273.1 452 61.3
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 1.1e-70 271.6 454 41.6
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 1.9e-70 270.8 456 39.9
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 1.9e-70 270.8 449 41.6
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 2.5e-70 270.4 457 40.7
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 4.2e-70 269.6 458 57.6
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 5.5e-70 269.2 452 58.6
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 9.4e-70 268.5 477 56.0
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 2.1e-69 267.3 456 40.6
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 4.6e-69 266.2 453 42.2
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 6.1e-69 265.8 452 42.7
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 6.1e-69 265.8 473 56.2
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 1.4e-68 264.6 451 40.8
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 1.4e-68 264.6 485 54.8
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.3e-68 263.8 495 54.1
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 2.3e-68 263.8 467 40.0
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 5.1e-68 262.7 457 40.0
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 6.7e-68 262.3 486 53.9
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 8.8e-68 261.9 471 50.5
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.1e-67 261.5 485 54.6
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 2.5e-67 260.4 441 50.8
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 2.5e-67 260.4 476 58.2
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 3.3e-67 260.0 431 46.6
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 3.3e-67 260.0 455 45.3
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 3.3e-67 260.0 463 40.0
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 4.3e-67 259.6 413 41.9
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 5.7e-67 259.2 430 41.6
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 7.4e-67 258.8 499 47.9
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 9.7e-67 258.5 455 40.4
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 1.3e-66 258.1 497 51.9
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.3e-66 258.1 426 43.9
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 2.2e-66 257.3 494 55.5
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 3.7e-66 256.5 458 55.9
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 6.3e-66 255.8 467 58.0
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 8.2e-66 255.4 440 39.8
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 1.1e-65 255.0 450 39.8
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 1.4e-65 254.6 441 56.0
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 1.4e-65 254.6 461 38.0
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 1.8e-65 254.2 463 48.6
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 2.4e-65 253.8 479 56.8
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 3.1e-65 253.4 457 38.7
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 4.1e-65 253.1 457 39.6
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 6.9e-65 252.3 507 52.3
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 2.2e-63 247.3 423 40.4
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 2.9e-63 246.9 466 37.3
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 2.9e-63 246.9 440 38.2
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 5.0e-63 246.1 462 46.1
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 6.5e-63 245.7 434 38.2
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 1.9e-62 244.2 412 46.8
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 2.5e-62 243.8 476 58.6
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 1.6e-61 241.1 457 37.4
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 4.7e-61 239.6 473 46.9
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 7.9e-61 238.8 413 60.0
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 2.0e-59 234.2 520 53.3
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 5.7e-59 232.6 451 48.6
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 7.4e-59 232.3 435 38.2
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 7.4e-59 232.3 462 37.7
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 2.8e-58 230.3 454 35.2
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 3.7e-58 229.9 507 48.9
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 4.8e-58 229.6 499 48.3
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 2.4e-57 227.3 464 44.0
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 3.1e-57 226.9 476 51.3
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 4.5e-56 223.0 456 36.0
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 1.7e-55 221.1 446 35.7
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 6.5e-55 219.2 465 46.5
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 6.5e-55 219.2 425 37.2
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 8.5e-55 218.8 562 44.7
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 1.5e-54 218.0 390 39.5
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 1.9e-54 217.6 455 35.2
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 7.2e-54 215.7 402 37.3
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 7.2e-54 215.7 496 53.8
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 2.1e-53 214.2 451 35.3
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 2.1e-53 214.2 385 38.7
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 3.6e-53 213.4 464 38.6
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 4.7e-53 213.0 474 44.1
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 3.0e-52 210.3 405 33.6
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 9.7e-51 205.3 504 43.1
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 9.7e-51 205.3 459 35.5
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 2.2e-50 204.1 566 42.6
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 6.5e-47 192.6 411 34.8
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 8.5e-47 192.2 156 66.7
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 1.5e-46 191.4 384 36.7
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 9.4e-46 188.7 175 61.7
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 8.0e-45 185.7 141 70.2
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 6.8e-44 182.6 422 50.2
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 6.8e-44 182.6 422 50.2
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 2.2e-39 167.5 107 83.2
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 6.1e-37 159.5 402 39.8
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.8e-36 157.9 148 60.1
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.8e-34 150.6 133 61.7
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 1.1e-33 148.7 157 54.8
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 8.0e-29 132.5 156 52.6
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 6.8e-28 129.4 476 35.9
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 3.9e-23 113.6 370 32.2
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 5.0e-23 113.2 421 27.8
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 1.9e-22 111.3 110 55.5
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 9.8e-19 99.0 62 71.0
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 1.3e-15 88.6 63 60.3
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 4.0e-12 77.0 554 21.5
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 4.4e-11 73.6 86 45.3
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 5.8e-11 73.2 80 48.8


User provided reference genes

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