Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G11780 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 2.0e-240 835.5 474 100.0
AL6G46490 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 3.1e-204 715.3 478 88.5
CARHR254530 Cardamine hirsuta HOM05D002977 ORTHO05D003225 2.4e-180 636.0 479 75.8
Thhalv10028604m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 2.0e-171 606.3 499 76.6
Carub.0006s3089 Capsella rubella HOM05D002977 ORTHO05D003225 1.6e-168 596.7 502 75.1
BraA09t38300Z Brassica rapa HOM05D002977 ORTHO05D003225 5.3e-156 555.1 498 70.9
A09p27340 Brassica napus HOM05D002977 ORTHO05D003225 1.6e-155 553.5 497 73.4
BcaB05g23809 Brassica carinata HOM05D002977 ORTHO05D003225 3.2e-153 545.8 499 73.7
BcaB01g01677 Brassica carinata HOM05D002977 ORTHO05D003225 4.4e-150 535.4 487 73.5
C09p34660 Brassica napus HOM05D002977 ORTHO05D003225 2.2e-149 533.1 492 72.8
BolC9t56312H Brassica oleracea HOM05D002977 ORTHO05D003225 2.9e-146 522.7 508 70.5
Sp6g05680 Schrenkiella parvula HOM05D002977 ORTHO05D003225 3.2e-145 519.2 493 69.4
A02p26000 Brassica napus HOM05D002977 ORTHO05D003225 1.8e-143 513.5 498 70.3
BraA02t07599Z Brassica rapa HOM05D002977 ORTHO05D003225 5.4e-140 501.9 506 68.8
BcaC03g16329 Brassica carinata HOM05D002977 ORTHO05D003225 7.8e-139 498.0 498 69.1
C02p41490 Brassica napus HOM05D002977 ORTHO05D003225 7.8e-139 498.0 498 69.1
BolC2t10166H Brassica oleracea HOM05D002977 ORTHO05D003225 1.3e-125 454.1 523 63.1
Aa31LG9G10650 Aethionema arabicum HOM05D002977 ORTHO05D003225 3.2e-124 449.5 491 57.8
Sp7g21110 Schrenkiella parvula HOM05D002977 ORTHO05D003225 8.4e-101 371.7 500 51.8
Thhalv10025169m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 1.2e-99 367.9 507 51.3
CARHR230080 Cardamine hirsuta HOM05D002977 ORTHO05D003225 1.4e-95 354.4 485 50.3
AT4G23020 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 1.1e-92 344.7 488 49.8
THA.LOC104806370 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 2.3e-90 337.0 509 52.7
C01p17640 Brassica napus HOM05D002977 ORTHO05D003225 2.8e-88 330.1 510 47.8
A01p14320 Brassica napus HOM05D002977 ORTHO05D003225 6.2e-88 328.9 498 47.4
BcaC09g51034 Brassica carinata HOM05D002977 ORTHO05D003225 2.1e-83 313.9 496 46.8
BraA01t01377Z Brassica rapa HOM05D002977 ORTHO05D003225 4.6e-83 312.8 532 45.1
AL7G30500 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 1.9e-81 307.4 490 46.1
Carub.0007s1825 Capsella rubella HOM05D002977 ORTHO05D003225 1.8e-79 300.8 504 44.8
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 4.4e-41 173.3 529 35.3
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 3.1e-39 167.2 524 34.4
BcaB03g11755 Brassica carinata HOM05D002977 ORTHO05D003225 1.2e-38 165.2 385 39.2
C03p84550 Brassica napus HOM05D002977 ORTHO05D003225 2.0e-38 164.5 175 54.9
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 5.9e-38 162.9 528 35.4
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 7.2e-36 156.0 506 31.8
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 3.6e-35 153.7 496 32.5
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 8.0e-35 152.5 502 30.9
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.8e-34 151.4 490 31.6
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 4.0e-34 150.2 539 32.8
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 5.2e-34 149.8 520 31.7
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 1.2e-33 148.7 486 34.6
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 1.5e-33 148.3 482 31.7
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 3.4e-33 147.1 490 31.4
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 7.5e-33 146.0 504 30.4
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 1.7e-32 144.8 502 30.5
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.2e-32 144.4 490 33.1
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 2.8e-32 144.1 523 32.3
CANSAT21G2154 Cannabis sativa HOM05D002977 ORTHO05D003225 1.1e-31 142.1 512 29.7
PGR042G2476 Punica granatum HOM05D002977 ORTHO05D003225 1.1e-31 142.1 518 31.1
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 1.4e-31 141.7 540 29.8
Medtr4g102650 Medicago truncatula HOM05D002977 ORTHO05D003225 1.0e-29 135.6 503 32.6
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 1.3e-29 135.2 487 33.1
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 1.7e-29 134.8 498 28.7
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 3.8e-29 133.7 503 31.2
TPR.G37675 Trifolium pratense HOM05D002977 ORTHO05D003225 5.0e-29 133.3 496 31.9
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 6.6e-29 132.9 544 30.1
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 4.2e-28 130.2 526 29.7
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 4.2e-28 130.2 492 29.1
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 7.2e-28 129.4 536 28.5
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 7.2e-28 129.4 495 29.1
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 1.6e-27 128.3 491 28.5
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 1.6e-27 128.3 490 30.0
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 2.8e-27 127.5 490 30.0
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 2.8e-27 127.5 490 30.0
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 2.8e-27 127.5 507 29.6
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 8.0e-27 125.9 513 28.3
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 1.4e-26 125.2 501 30.7
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 2.3e-26 124.4 501 26.7
BolC3t20745H Brassica oleracea HOM05D002977 ORTHO05D003225 3.0e-26 124.0 126 54.8
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 1.2e-25 122.1 506 31.4
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 2.0e-25 121.3 503 30.0
PGSC0003DMG400022757 Solanum tuberosum HOM05D002977 ORTHO05D003225 2.0e-25 121.3 496 30.4
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 4.4e-25 120.2 506 28.5
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 5.7e-25 119.8 510 30.2
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 7.5e-25 119.4 503 28.0
Glyma.05G050000 Glycine max HOM05D002977 ORTHO05D003225 7.5e-25 119.4 494 27.3
Glyma.17G132000 Glycine max HOM05D002977 ORTHO05D003225 9.8e-25 119.0 507 28.8
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 3.7e-24 117.1 514 29.4
arahy.Tifrunner.gnm1.ann1.BQI3IB Arachis hypogaea HOM05D002977 ORTHO05D003225 6.3e-24 116.3 496 33.5
Lj4g0001816 Lotus japonicus HOM05D002977 ORTHO05D003225 8.3e-24 115.9 478 30.1
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 1.4e-23 115.2 504 28.2
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 1.4e-23 115.2 519 29.3
Lalb_Chr05g0225091 Lupinus albus HOM05D002977 ORTHO05D003225 2.4e-23 114.4 492 28.3
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 3.1e-23 114.0 501 30.1
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 3.1e-23 114.0 503 27.6
BcaNung01001 Brassica carinata HOM05D002977 ORTHO05D003225 1.2e-22 112.1 118 60.2
HanXRQChr07g0188421 Helianthus annuus HOM05D002977 ORTHO05D003225 1.6e-22 111.7 497 27.8
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 2.0e-22 111.3 493 28.8
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.0e-22 111.3 517 27.1
arahy.Tifrunner.gnm1.ann1.ELA92E Arachis hypogaea HOM05D002977 ORTHO05D003225 2.7e-22 110.9 491 32.6
Gohir.A12G224700 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.7e-22 110.9 406 28.8
CiPaw.12G098800 Carya illinoinensis HOM05D002977 ORTHO05D003225 3.5e-22 110.5 529 29.7
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 4.5e-22 110.2 509 26.9
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 7.8e-22 109.4 204 34.8
FAN08G2595 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.3e-21 108.6 526 28.9
FAN13G0210 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.3e-21 108.6 484 28.7
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.9e-21 107.5 520 26.9
Gohir.D12G227500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 5.0e-21 106.7 416 28.1
Hund28360 Selenicereus undatus HOM05D002977 ORTHO05D003225 8.6e-21 105.9 498 27.3
Hund28364 Selenicereus undatus HOM05D002977 ORTHO05D003225 8.6e-21 105.9 498 27.3
Gorai.008G243500 Gossypium raimondii HOM05D002977 ORTHO05D003225 1.5e-20 105.1 412 27.9
VMungo1215G3066 Vigna mungo HOM05D002977 ORTHO05D003225 2.5e-20 104.4 508 27.8
Phvul.003G212900 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 3.3e-20 104.0 519 29.1
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 5.6e-20 103.2 509 30.5
Ah.12g057650 Amaranthus hybridus HOM05D002977 ORTHO05D003225 7.3e-20 102.8 467 27.2
ECA233G2885 Erigeron canadensis HOM05D002977 ORTHO05D003225 1.2e-19 102.1 494 24.9
Sed0005409 Sechium edule HOM05D002977 ORTHO05D003225 1.2e-19 102.1 503 27.4
Dinv39013 Davidia involucrata HOM05D002977 ORTHO05D003225 4.7e-19 100.1 394 30.7
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 6.1e-19 99.8 494 27.1
Lj2A196T48 Lonicera japonica HOM05D002977 ORTHO05D003225 1.0e-18 99.0 368 27.7
DCAR_006762 Daucus carota HOM05D002977 ORTHO05D003225 1.5e-17 95.1 418 29.2
MBI04_g42596_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 4.9e-16 90.1 503 28.8
GSVIVG01019863001 Vitis vinifera HOM05D002977 ORTHO05D003225 4.1e-15 87.0 188 37.2
CSS0002536 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 1.6e-14 85.1 448 29.2
Ciclev10023936m.g Citrus clementina HOM05D002977 ORTHO05D003225 3.0e-13 80.9 177 37.3
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 2.8e-11 74.3 510 25.7
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 4.7e-11 73.6 484 24.2
MBI12_g11809_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 4.7e-11 73.6 486 26.1
MD04G1068300 Malus domestica HOM05D002977 ORTHO05D003225 4.7e-11 73.6 122 42.6
Cpa.g.sc74.83 Carica papaya HOM05D002977 ORTHO05D003225 6.2e-11 73.2 187 32.1
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 1.1e-10 72.4 542 25.1
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 1.1e-10 72.4 495 23.8
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 1.4e-10 72.0 483 25.5
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 2.3e-10 71.2 461 26.5
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 4.0e-10 70.5 509 24.6
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 2.6e-09 67.8 486 25.1
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 2.6e-09 67.8 487 24.2
Lsat_1_v5_gn_3_5860 Lactuca sativa HOM05D002524 ORTHO05D002718 3.4e-09 67.4 461 26.7
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 4.4e-09 67.0 486 23.9
Oeu062354.1 Olea europaea HOM05D002977 ORTHO05D003225 5.8e-09 66.6 101 44.6
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 1.3e-08 65.5 474 24.1
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 3.7e-08 63.9 477 24.5
Lj2C196G7 Lonicera japonica HOM05D002977 ORTHO05D003225 3.7e-08 63.9 90 40.0
Hma1.2p1_0371F.1_g138190 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 8.3e-08 62.8 172 28.5
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 8.3e-08 62.8 207 26.6
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 1.1e-07 62.4 425 28.2
AUR62017299 Chenopodium quinoa HOM05D002977 ORTHO05D003225 1.9e-07 61.6 391 23.5
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 1.9e-07 61.6 491 26.1
Cpa.g.c33531 Carica papaya HOM05D002977 ORTHO05D003225 2.4e-07 61.2 492 25.0
PSO478G2989 Papaver somniferum HOM05D002977 ORTHO05D003225 3.2e-07 60.8 554 24.5
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 3.2e-07 60.8 474 22.6
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 4.1e-07 60.5 496 25.4
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 5.4e-07 60.1 475 22.9
ECA246G0913 Erigeron canadensis HOM05D002977 ORTHO05D003225 1.2e-06 58.9 458 22.5
Prupe.2G153900 Prunus persica HOM05D002977 ORTHO05D003225 1.6e-06 58.5 462 24.9
Sc01g0008790 Simmondsia chinensis HOM05D002977 ORTHO05D003225 1.6e-06 58.5 80 36.2
FAN10G0205 Fragaria x ananassa HOM05D002977 ORTHO05D003225 2.7e-06 57.8 485 26.0
QL08p050716 Quercus lobata HOM05D002977 ORTHO05D003225 2.7e-06 57.8 212 26.9
PSO782G0819 Papaver somniferum HOM05D002977 ORTHO05D003225 6.0e-06 56.6 574 20.2
DCAR_007743 Daucus carota HOM05D003485 ORTHO05D004004 7.8e-06 56.2 202 26.7
FAN10G1938 Fragaria x ananassa HOM05D002977 ORTHO05D003225 7.8e-06 56.2 485 25.2


User provided reference genes

Program Settings