Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G11700 Arabidopsis thaliana HOM05D002679 ORTHO05D012452 9.5e-101 370.2 184 100.0
Carub.0006s2997 Capsella rubella HOM05D002679 ORTHO05D012452 2.4e-43 179.5 144 64.6
Carub.0006s3079 Capsella rubella HOM05D002679 ORTHO05D012452 7.6e-42 174.5 159 59.1
AL3G49080 Arabidopsis lyrata HOM05D002679 ORTHO05D012311 3.3e-29 132.5 121 52.9
Carub.0003s3450 Capsella rubella HOM05D002679 ORTHO05D012452 4.1e-27 125.6 129 55.8
BraA03t14032Z Brassica rapa HOM05D002679 ORTHO05D012452 4.5e-26 122.1 174 45.4
AL3G52720 Arabidopsis lyrata HOM05D002679 ORTHO05D012311 5.9e-26 121.7 116 52.6
Carub.0003s3390 Capsella rubella HOM05D002679 ORTHO05D012452 1.0e-25 120.9 129 54.3
BcaB01g04250 Brassica carinata HOM05D002679 ORTHO05D012452 1.9e-24 116.7 136 50.7
BcaC06g33119 Brassica carinata HOM05D002679 ORTHO05D012452 1.2e-23 114.0 170 45.9
BcaC06g33274 Brassica carinata HOM05D002679 ORTHO05D012452 1.2e-23 114.0 170 45.9
AL4G35970 Arabidopsis lyrata HOM05D002679 ORTHO05D012452 3.0e-22 109.4 132 48.5
BcaC06g33450 Brassica carinata HOM05D002679 ORTHO05D012452 6.7e-22 108.2 169 45.0
BolC7t45265H Brassica oleracea HOM05D002679 ORTHO05D012452 1.4e-19 100.5 122 49.2
C07p47380 Brassica napus HOM05D002679 ORTHO05D012452 1.8e-19 100.1 120 50.0
AL1G56900 Arabidopsis lyrata HOM05D002679 ORTHO05D010656 1.5e-18 97.1 125 48.8
Carub.0001s3874 Capsella rubella HOM05D002679 ORTHO05D010656 2.6e-18 96.3 126 47.6
CARHR170750 Cardamine hirsuta HOM05D002679 ORTHO05D012311 3.4e-18 95.9 134 46.3
Thhalv10028328m.g Eutrema salsugineum HOM05D002679 ORTHO05D012452 3.4e-18 95.9 127 49.6
A03p49310 Brassica napus HOM05D002679 ORTHO05D012452 5.9e-18 95.1 128 48.4
CARHR073970 Cardamine hirsuta HOM05D002679 ORTHO05D012311 1.0e-17 94.4 160 36.9
Carub.0001s3873 Capsella rubella HOM05D002679 ORTHO05D010656 2.2e-17 93.2 126 46.0
Thhalv10027954m.g Eutrema salsugineum HOM05D002679 ORTHO05D012452 2.9e-17 92.8 131 45.0
AL5G38700 Arabidopsis lyrata HOM05D002679 ORTHO05D012311 3.8e-17 92.4 122 45.1
AL4G36830 Arabidopsis lyrata HOM05D002679 ORTHO05D012452 5.0e-17 92.0 121 47.9
BcaC05g26430 Brassica carinata HOM05D002679 ORTHO05D012311 8.5e-17 91.3 129 46.5
C05p24780 Brassica napus HOM05D002679 ORTHO05D012311 8.5e-17 91.3 129 46.5
BolC5t31206H Brassica oleracea HOM05D002679 ORTHO05D012311 8.5e-17 91.3 129 46.5
Carub.0007s3405 Capsella rubella HOM05D002679 ORTHO05D012311 7.2e-16 88.2 140 41.4
Carub.0007s3406 Capsella rubella HOM05D002679 ORTHO05D012311 7.2e-16 88.2 121 43.8
CARHR133380 Cardamine hirsuta HOM05D002679 ORTHO05D012452 1.2e-15 87.4 120 45.0
AT1G22090 Arabidopsis thaliana HOM05D002679 ORTHO05D010656 1.6e-15 87.0 109 44.0
AL1G35520 Arabidopsis lyrata HOM05D002679 ORTHO05D010656 2.1e-15 86.7 167 37.7
AT3G57210 Arabidopsis thaliana HOM05D002679 ORTHO05D012311 2.1e-15 86.7 103 49.5
A09p39720 Brassica napus HOM05D002679 ORTHO05D012311 3.6e-15 85.9 118 46.6
AL6G32810 Arabidopsis lyrata HOM05D002679 ORTHO05D014856 6.1e-15 85.1 141 37.6
Carub.0005s1849 Capsella rubella HOM05D002679 ORTHO05D012311 6.1e-15 85.1 100 46.0
BraA09t39471Z Brassica rapa HOM05D002679 ORTHO05D012311 7.9e-15 84.7 118 45.8
AL1G40550 Arabidopsis lyrata HOM05D002679 ORTHO05D012311 1.8e-14 83.6 120 44.2
BcaC08g43156 Brassica carinata HOM05D002679 ORTHO05D012311 3.9e-14 82.4 118 44.9
C06p04390 Brassica napus HOM05D002679 ORTHO05D012311 3.9e-14 82.4 118 44.9
BolC6t35570H Brassica oleracea HOM05D002679 ORTHO05D012311 3.9e-14 82.4 118 44.9
BraA09t39473Z Brassica rapa HOM05D002679 ORTHO05D012311 3.9e-14 82.4 118 44.9
Thhalv10027826m.g Eutrema salsugineum HOM05D002679 ORTHO05D012311 6.7e-14 81.6 112 43.8
C06p20110 Brassica napus HOM05D002679 ORTHO05D010656 8.8e-14 81.3 132 45.5
BolC6t37193H Brassica oleracea HOM05D002679 ORTHO05D010656 8.8e-14 81.3 132 45.5
Carub.0003s3340 Capsella rubella HOM05D002679 ORTHO05D012452 1.1e-13 80.9 70 60.0
Carub.0006s1922 Capsella rubella HOM05D002679 ORTHO05D014856 4.4e-13 79.0 143 39.2
AL1G35530 Arabidopsis lyrata HOM05D002679 ORTHO05D010656 7.4e-13 78.2 111 42.3
Carub.0006s1923 Capsella rubella HOM05D002679 ORTHO05D014856 1.7e-12 77.0 144 41.0
BcaC08g44542 Brassica carinata HOM05D002679 ORTHO05D012311 2.2e-12 76.6 119 45.4
BcaB03g13318 Brassica carinata HOM05D002679 ORTHO05D010656 4.8e-12 75.5 143 35.0
Thhalv10028292m.g Eutrema salsugineum HOM05D002679 ORTHO05D012452 6.3e-12 75.1 99 48.5
Thhalv10004573m.g Eutrema salsugineum HOM05D002679 ORTHO05D014856 1.4e-11 73.9 135 39.3
AL108U10030 Arabidopsis lyrata HOM05D002679 ORTHO05D012984 5.3e-11 72.0 102 42.2
AL6G39940 Arabidopsis lyrata HOM05D002679 ORTHO05D012452 5.3e-11 72.0 120 39.2
AT3G25080 Arabidopsis thaliana HOM05D002679 ORTHO05D014856 5.3e-11 72.0 127 41.7
AL8G40780 Arabidopsis lyrata HOM05D002679 ORTHO05D012984 7.0e-11 71.6 125 40.0
AT3G19520 Arabidopsis thaliana HOM05D002679 ORTHO05D010703 1.2e-10 70.9 121 33.1
BcaB07g34162 Brassica carinata HOM05D002679 ORTHO05D012984 2.0e-10 70.1 116 35.3
AL5G14060 Arabidopsis lyrata HOM05D002679 ORTHO05D012984 2.6e-10 69.7 128 36.7
Carub.0001s2632 Capsella rubella HOM05D002679 ORTHO05D010703 3.5e-10 69.3 133 32.3
Carub.0001s2694 Capsella rubella HOM05D002679 ORTHO05D010703 4.5e-10 68.9 143 34.3
AL3G32930 Arabidopsis lyrata HOM05D002679 ORTHO05D010703 5.9e-10 68.6 135 34.8
AL1G49350 Arabidopsis lyrata HOM05D002679 ORTHO05D010656 1.7e-09 67.0 113 37.2
AL1G49380 Arabidopsis lyrata HOM05D002679 ORTHO05D010656 1.7e-09 67.0 113 36.3
AL3G32940 Arabidopsis lyrata HOM05D002679 ORTHO05D010703 2.2e-09 66.6 119 37.0
BcaC07g38416 Brassica carinata HOM05D000200 ORTHO05D000262 2.2e-09 66.6 150 32.0
AT1G19060 Arabidopsis thaliana HOM05D002679 ORTHO05D010703 2.9e-09 66.2 125 37.6
AT1G23970 Arabidopsis thaliana HOM05D002679 ORTHO05D010703 3.8e-09 65.9 130 36.2
BcaC09g47966 Brassica carinata HOM05D002679 ORTHO05D014856 5.0e-09 65.5 104 43.3
BolC1t05512H Brassica oleracea HOM05D002679 ORTHO05D014856 5.0e-09 65.5 104 43.3
AT1G28500 Arabidopsis thaliana HOM05D002679 ORTHO05D010703 8.5e-09 64.7 133 30.8
C02p61320 Brassica napus HOM05D002679 ORTHO05D012984 1.1e-08 64.3 128 35.2
BraA07t29124Z Brassica rapa HOM05D002679 ORTHO05D010703 1.1e-08 64.3 144 31.9
AL1G37670 Arabidopsis lyrata HOM05D002679 ORTHO05D010703 1.5e-08 63.9 115 35.7
BcaB04g21259 Brassica carinata HOM05D002679 ORTHO05D014856 1.9e-08 63.5 114 41.2
AL1G37720 Arabidopsis lyrata HOM05D002679 ORTHO05D010703 2.5e-08 63.2 115 34.8
BcaC03g17689 Brassica carinata HOM05D002679 ORTHO05D012984 2.5e-08 63.2 128 35.9
A02p37800 Brassica napus HOM05D002679 ORTHO05D012984 2.5e-08 63.2 128 35.9
C02p56980 Brassica napus HOM05D002679 ORTHO05D012984 2.5e-08 63.2 128 35.9
BolC2t11767H Brassica oleracea HOM05D002679 ORTHO05D012984 2.5e-08 63.2 128 35.9
BraA02t08763Z Brassica rapa HOM05D002679 ORTHO05D012984 2.5e-08 63.2 128 35.9
Carub.0003s1934 Capsella rubella HOM05D002679 ORTHO05D010703 3.2e-08 62.8 124 36.3
Carub.0003s1935 Capsella rubella HOM05D002679 ORTHO05D010703 3.2e-08 62.8 124 36.3
CARHR168030 Cardamine hirsuta HOM05D002679 ORTHO05D014856 3.2e-08 62.8 115 40.9
A07p13740 Brassica napus HOM05D002679 ORTHO05D010703 4.2e-08 62.4 136 33.1
AT1G02770 Arabidopsis thaliana HOM05D002679 ORTHO05D010703 7.2e-08 61.6 122 36.1
AL1G42110 Arabidopsis lyrata HOM05D002679 ORTHO05D010703 1.2e-07 60.8 107 31.8
AT1G23950 Arabidopsis thaliana HOM05D002679 ORTHO05D010703 1.2e-07 60.8 126 33.3
BcaC07g38442 Brassica carinata HOM05D002679 ORTHO05D010656 1.2e-07 60.8 122 34.4
C08p12110 Brassica napus HOM05D002679 ORTHO05D010656 1.2e-07 60.8 122 34.4
BcaB03g14130 Brassica carinata HOM05D002679 ORTHO05D010703 1.6e-07 60.5 146 31.5
A07p13690 Brassica napus HOM05D002679 ORTHO05D010703 1.6e-07 60.5 119 37.8
C02p64430 Brassica napus HOM05D002679 ORTHO05D011194 3.6e-07 59.3 103 42.7
AT1G27860 Arabidopsis thaliana HOM05D002679 ORTHO05D010703 6.1e-07 58.5 125 30.4
BcaC06g35072 Brassica carinata HOM05D002679 ORTHO05D010703 6.1e-07 58.5 110 36.4
A10p28330 Brassica napus HOM05D002679 ORTHO05D023662 8.0e-07 58.2 119 31.1
C05p43390 Brassica napus HOM05D002679 ORTHO05D010703 8.0e-07 58.2 111 37.8
AL7G36480 Arabidopsis lyrata HOM05D002679 ORTHO05D011194 1.0e-06 57.8 119 35.3
AL7G36490 Arabidopsis lyrata HOM05D002679 ORTHO05D011194 1.0e-06 57.8 118 35.6
AL7G36510 Arabidopsis lyrata HOM05D002679 ORTHO05D011194 1.0e-06 57.8 119 35.3
BcaC03g13474 Brassica carinata HOM05D002679 ORTHO05D011194 1.0e-06 57.8 98 43.9
A08p35020 Brassica napus HOM05D002679 ORTHO05D010656 1.0e-06 57.8 110 36.4
BraA08t35412Z Brassica rapa HOM05D002679 ORTHO05D010656 1.0e-06 57.8 110 36.4
BcaB03g14132 Brassica carinata HOM05D002679 ORTHO05D010703 2.3e-06 56.6 130 32.3
BraA10t44880Z Brassica rapa HOM05D002679 ORTHO05D023662 3.0e-06 56.2 121 30.6
AL1G37710 Arabidopsis lyrata HOM05D002679 ORTHO05D010703 4.0e-06 55.8 129 33.3
BcaC03g13483 Brassica carinata HOM05D002679 ORTHO05D011194 4.0e-06 55.8 103 36.9
BolC2t12507H Brassica oleracea HOM05D002679 ORTHO05D011194 4.0e-06 55.8 106 43.4
BolC8t48845H Brassica oleracea HOM05D002679 ORTHO05D010656 4.0e-06 55.8 109 35.8
Carub.0007s3636 Capsella rubella HOM05D002679 ORTHO05D011194 5.2e-06 55.5 110 38.2


User provided reference genes

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