Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 5.9e-102 374.4 218 100.0
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.2e-86 323.6 222 89.6
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 1.0e-85 320.5 222 79.3
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 7.6e-81 304.3 219 76.3
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 3.5e-78 295.4 220 76.4
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 9.6e-76 287.3 219 73.5
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 5.8e-73 278.1 227 73.1
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 9.9e-73 277.3 220 72.3
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 2.2e-72 276.2 219 72.1
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 2.2e-64 249.6 242 63.6
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 9.3e-63 244.2 276 58.3
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.9e-44 183.3 123 84.6
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 6.7e-37 158.3 208 48.6
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 7.4e-36 154.8 211 47.4
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 9.7e-36 154.5 219 47.0
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 1.6e-35 153.7 219 48.9
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 1.6e-35 153.7 222 51.4
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 3.7e-35 152.5 218 51.4
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 4.8e-35 152.1 215 47.9
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.1e-34 151.0 215 50.7
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.4e-34 150.6 192 49.5
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 1.8e-34 150.2 226 46.9
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 1.8e-34 150.2 199 47.2
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 2.4e-34 149.8 214 50.5
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 3.1e-34 149.4 208 46.6
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 4.1e-34 149.1 179 55.9
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 4.1e-34 149.1 179 51.4
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.3e-34 148.7 215 45.6
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 6.9e-34 148.3 200 47.5
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 6.9e-34 148.3 211 46.0
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 9.1e-34 147.9 220 46.8
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 9.1e-34 147.9 215 51.2
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 9.1e-34 147.9 215 47.0
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.6e-33 146.4 215 49.3
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 2.6e-33 146.4 215 47.9
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 4.5e-33 145.6 211 46.9
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 7.7e-33 144.8 216 47.7
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 7.7e-33 144.8 223 44.4
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 7.7e-33 144.8 206 47.6
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.0e-32 144.4 215 46.0
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.0e-32 144.4 219 47.9
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.3e-32 144.1 215 46.0
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 1.3e-32 144.1 182 50.0
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 2.9e-32 142.9 218 43.6
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 3.8e-32 142.5 215 48.8
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 3.8e-32 142.5 219 54.8
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.0e-32 142.1 215 45.6
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 1.4e-31 140.6 203 47.3
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.4e-31 140.6 237 42.2
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 7.2e-31 138.3 211 44.5
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 7.2e-31 138.3 204 46.6
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.2e-30 137.5 179 52.5
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.2e-30 137.5 179 52.5
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 1.2e-30 137.5 197 47.7
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.6e-30 137.1 224 45.1
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 2.7e-30 136.3 238 41.2
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 3.6e-30 136.0 201 47.8
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 3.6e-30 136.0 201 47.8
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 3.6e-30 136.0 198 44.4
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 4.6e-30 135.6 216 52.3
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 7.9e-30 134.8 180 52.8
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 1.0e-29 134.4 203 52.7
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 1.4e-29 134.0 205 44.9
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 1.4e-29 134.0 211 52.1
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.3e-29 133.3 235 40.9
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 3.0e-29 132.9 221 47.1
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 6.7e-29 131.7 211 43.1
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 1.5e-28 130.6 217 43.3
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 2.0e-28 130.2 211 47.4
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 2.6e-28 129.8 211 46.4
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 2.6e-28 129.8 220 45.5
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 3.3e-28 129.4 224 43.8
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 4.4e-28 129.0 220 45.5
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 4.4e-28 129.0 220 45.5
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 5.7e-28 128.6 201 45.8
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 9.7e-28 127.9 220 42.7
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 1.3e-27 127.5 220 45.0
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 2.2e-27 126.7 218 45.4
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 2.8e-27 126.3 187 45.5
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 6.3e-27 125.2 207 42.5
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 8.2e-27 124.8 263 37.3
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 1.4e-26 124.0 202 50.0
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 1.4e-26 124.0 225 41.3
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 3.1e-26 122.9 208 40.9
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 4.1e-26 122.5 126 58.7
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 4.1e-26 122.5 217 47.5
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 9.1e-26 121.3 206 41.3
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.5e-25 120.6 183 44.8
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 2.6e-25 119.8 207 41.5
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 1.0e-24 117.9 215 40.9
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 1.3e-24 117.5 206 40.8
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.3e-24 117.5 268 36.6
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.3e-24 117.5 268 36.6
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.7e-24 117.1 118 57.6
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.7e-24 117.1 118 57.6
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 1.7e-24 117.1 118 56.8
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 2.9e-24 116.3 214 41.6
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 2.9e-24 116.3 210 41.4
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 3.8e-24 115.9 210 41.0
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 1.1e-23 114.4 118 56.8
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.9e-23 113.6 120 55.0
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 7.2e-23 111.7 118 55.1
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 9.4e-23 111.3 211 40.3
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 1.6e-22 110.5 125 55.2
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 2.1e-22 110.2 132 50.8
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 2.1e-22 110.2 116 54.3
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 3.6e-22 109.4 113 54.9
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 7.9e-22 108.2 126 51.6
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 1.4e-21 107.5 202 45.5
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.4e-21 107.5 122 50.0
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.8e-21 107.1 207 39.1
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 3.0e-21 106.3 126 50.8
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.1e-20 104.4 121 51.2
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 1.1e-20 104.4 118 54.2
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 1.5e-20 104.0 277 33.6
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 2.0e-20 103.6 125 52.0
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 9.7e-20 101.3 257 37.4
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.7e-19 100.5 163 42.3
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 1.1e-18 97.8 206 39.8
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 2.4e-18 96.7 182 41.8
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 7.0e-18 95.1 98 53.1
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 1.3e-16 90.9 224 35.7
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.3e-16 90.9 202 37.6
BcaB01g01572 Brassica carinata HOM05D005115 ORTHO05D005703 3.8e-16 89.4 64 76.6
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 2.7e-14 83.2 118 45.8
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 6.1e-14 82.0 100 51.0
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 1.4e-13 80.9 105 48.6
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 1.5e-12 77.4 116 44.0
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 2.6e-12 76.6 176 35.2
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 5.7e-12 75.5 95 45.3
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 1.3e-11 74.3 102 42.2
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.3e-11 72.0 106 43.4
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.3e-11 72.0 106 43.4
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 6.3e-11 72.0 106 43.4
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 1.6e-09 67.4 200 35.5
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 3.5e-09 66.2 54 61.1
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 1.7e-08 63.9 75 57.3
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 3.8e-08 62.8 125 40.8
BcaC04g21094 Brassica carinata HOM05D000749 ORTHO05D032201 1.6e-06 57.4 42 73.8
C09p35740 Brassica napus HOM05D000749 ORTHO05D032201 1.6e-06 57.4 42 73.8


User provided reference genes

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