Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.3e-97 359.8 184 100.0
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 8.0e-92 340.5 185 95.7
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 8.0e-92 340.5 184 94.0
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 4.4e-90 334.7 184 91.8
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 1.3e-89 333.2 184 91.8
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 8.3e-89 330.5 184 91.3
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 1.1e-88 330.1 184 91.3
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 1.4e-88 329.7 184 91.3
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 1.4e-88 329.7 184 91.3
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 3.2e-88 328.6 184 92.9
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 1.2e-87 326.6 184 90.2
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 1.2e-87 326.6 184 90.2
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 4.7e-84 314.7 213 78.9
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 2.9e-81 305.4 173 90.2
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 7.8e-79 297.4 211 75.8
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 1.2e-76 290.0 202 77.2
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 4.4e-74 281.6 159 90.6
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 7.6e-74 280.8 184 75.5
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 7.6e-74 280.8 184 75.5
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 1.7e-73 279.6 164 87.2
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 2.2e-73 279.3 182 74.7
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 4.9e-73 278.1 184 75.0
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 4.9e-73 278.1 179 76.0
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 4.9e-73 278.1 179 76.0
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.4e-72 276.6 184 75.5
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 9.2e-72 273.9 170 78.2
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.5e-69 266.5 189 73.0
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 1.5e-69 266.5 170 77.6
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 2.5e-69 265.8 170 77.6
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 9.9e-66 253.8 158 84.8
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 1.1e-64 250.4 184 70.1
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 9.3e-64 247.3 178 70.2
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 2.1e-63 246.1 174 70.7
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 2.7e-63 245.7 177 71.2
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 7.8e-63 244.2 184 69.6
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 1.0e-62 243.8 185 67.0
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 1.0e-62 243.8 184 66.8
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.3e-62 243.4 184 68.5
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.3e-62 243.4 182 68.1
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 2.3e-62 242.7 177 69.5
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 2.3e-62 242.7 183 66.1
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 3.0e-62 242.3 174 67.8
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 3.0e-62 242.3 174 70.1
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 3.9e-62 241.9 174 71.8
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 3.9e-62 241.9 175 70.3
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 5.1e-62 241.5 179 70.4
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 5.1e-62 241.5 184 67.4
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 6.6e-62 241.1 175 71.4
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 1.1e-61 240.4 178 69.1
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 2.5e-61 239.2 169 71.0
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 9.6e-61 237.3 177 66.7
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 9.6e-61 237.3 206 63.1
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 2.1e-60 236.1 185 65.4
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 2.1e-60 236.1 184 64.7
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 2.1e-60 236.1 180 66.1
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 3.6e-60 235.3 174 69.0
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 4.8e-60 235.0 178 68.0
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 8.1e-60 234.2 157 74.5
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.1e-59 233.8 179 68.7
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.1e-59 233.8 178 66.3
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 1.4e-59 233.4 175 66.3
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.4e-59 232.6 177 66.1
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.4e-59 232.6 177 66.1
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 2.4e-59 232.6 177 66.1
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 3.1e-59 232.3 172 67.4
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 3.1e-59 232.3 184 64.7
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 3.1e-59 232.3 195 62.1
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 4.0e-59 231.9 172 68.6
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 6.9e-59 231.1 184 63.6
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 6.9e-59 231.1 173 68.2
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 9.0e-59 230.7 163 71.2
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 1.2e-58 230.3 174 66.7
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 1.2e-58 230.3 182 64.8
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 1.2e-58 230.3 186 64.5
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.2e-58 230.3 174 67.2
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 1.2e-58 230.3 178 65.2
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 1.5e-58 229.9 178 66.9
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.5e-58 229.9 178 65.2
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 2.0e-58 229.6 169 68.6
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 2.0e-58 229.6 160 70.0
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 2.6e-58 229.2 163 69.9
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 2.6e-58 229.2 175 65.7
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 2.6e-58 229.2 153 73.9
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 3.4e-58 228.8 164 70.7
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 4.4e-58 228.4 173 67.6
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 9.9e-58 227.3 177 65.5
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 9.9e-58 227.3 160 73.1
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 1.3e-57 226.9 164 70.7
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 1.3e-57 226.9 177 65.5
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 1.7e-57 226.5 169 68.0
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 2.2e-57 226.1 161 70.2
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 2.9e-57 225.7 166 69.3
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 3.8e-57 225.3 130 83.8
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 3.8e-57 225.3 174 66.7
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 3.8e-57 225.3 177 64.4
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.8e-57 225.3 186 65.6
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 1.4e-56 223.4 166 67.5
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.4e-56 223.4 166 68.1
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 1.9e-56 223.0 177 63.8
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 5.4e-56 221.5 160 69.4
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 5.4e-56 221.5 177 65.5
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 7.1e-56 221.1 130 83.8
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 9.3e-56 220.7 150 72.0
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.2e-55 220.3 184 62.0
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.6e-55 219.9 179 59.8
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.7e-55 219.2 185 64.9
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 4.6e-55 218.4 170 65.3
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 6.0e-55 218.0 173 64.7
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 1.0e-54 217.2 162 63.0
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.7e-54 216.5 130 80.8
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.3e-54 216.1 170 64.7
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 3.0e-54 215.7 178 62.4
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 3.0e-54 215.7 170 68.8
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 1.1e-53 213.8 177 59.9
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 1.5e-53 213.4 175 62.9
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.9e-53 213.0 170 64.1
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 3.3e-53 212.2 183 61.7
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 4.3e-53 211.8 172 60.5
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 7.3e-53 211.1 175 63.4
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 2.1e-52 209.5 174 60.9
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 2.8e-52 209.1 184 57.6
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 3.6e-52 208.8 167 59.9
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 4.0e-51 205.3 154 65.6
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 4.0e-51 205.3 154 65.6
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 4.0e-51 205.3 220 52.7
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 5.3e-51 204.9 154 65.6
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 9.0e-51 204.1 160 66.2
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 9.0e-51 204.1 177 61.0
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 9.0e-51 204.1 159 60.4
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 7.6e-50 201.1 157 66.9
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 7.6e-50 201.1 130 78.5
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 1.7e-49 199.9 174 57.5
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 2.2e-49 199.5 155 64.5
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 2.4e-48 196.1 122 79.5
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 9.3e-48 194.1 129 75.2
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 1.3e-46 190.3 121 74.4
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 1.8e-46 189.9 130 71.5
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 7.4e-45 184.5 119 76.5
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 3.1e-43 179.1 96 93.8
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 3.8e-41 172.2 148 60.1
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 6.5e-41 171.4 151 57.6
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.1e-40 170.6 158 53.8
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 4.2e-40 168.7 144 56.2
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 9.3e-40 167.5 121 65.3
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 5.1e-38 161.8 122 67.2
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 1.5e-37 160.2 166 51.8
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 1.9e-37 159.8 133 60.9
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 2.5e-37 159.5 135 63.7
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.6e-36 156.8 145 52.4
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 2.1e-36 156.4 134 61.9
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 5.8e-34 148.3 130 56.9
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.0e-33 147.5 176 47.2
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 1.7e-33 146.7 149 50.3
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 1.8e-30 136.7 120 60.8
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 2.2e-25 119.8 95 60.0
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 8.8e-22 107.8 111 52.3
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.5e-21 107.1 149 45.0
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 4.2e-16 89.0 86 53.5
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 4.2e-16 89.0 105 42.9
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 2.2e-09 66.6 46 60.9
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 8.5e-09 64.7 44 70.5
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 5.5e-08 62.0 46 69.6
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 5.5e-08 62.0 46 69.6
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 1.2e-07 60.8 46 67.4
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 3.6e-07 59.3 47 66.0


User provided reference genes

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