Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.0e-178 629.0 326 100.0
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.4e-108 394.8 326 71.5
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 4.1e-107 392.1 324 70.7
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 7.5e-93 344.7 335 64.2
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.1e-87 326.6 339 61.1
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 1.2e-82 310.8 330 60.3
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.4e-78 297.4 363 53.7
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 6.0e-74 282.0 340 57.4
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 6.0e-74 282.0 340 57.4
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.3e-73 280.8 378 54.2
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.1e-67 261.2 364 52.7
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.1e-67 261.2 364 52.7
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 7.1e-67 258.5 366 51.1
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 9.6e-64 248.1 324 51.5
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 2.8e-63 246.5 326 50.9
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.2e-61 241.1 324 52.2
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-61 241.1 324 52.2
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.2e-61 241.1 324 52.2
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 5.5e-59 232.3 327 48.9
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.1e-56 224.6 386 44.8
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.6e-55 220.7 338 48.2
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 7.6e-53 211.8 287 52.3
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 2.0e-45 187.2 346 40.2
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.1e-40 171.4 376 37.0
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 2.2e-39 167.2 336 38.7
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 4.8e-39 166.0 355 38.3
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.1e-38 164.9 336 38.4
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 1.8e-38 164.1 348 39.1
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.8e-38 164.1 357 37.0
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 3.1e-38 163.3 379 37.7
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 9.1e-38 161.8 336 37.8
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 1.2e-37 161.4 348 37.9
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 1.2e-37 161.4 344 36.0
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 2.0e-37 160.6 348 35.9
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 7.7e-37 158.7 369 34.1
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.0e-36 158.3 337 37.1
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 1.7e-36 157.5 349 37.8
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 2.2e-36 157.1 369 34.1
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 3.8e-36 156.4 353 37.4
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 5.0e-36 156.0 364 35.4
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 6.5e-36 155.6 346 36.1
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 6.5e-36 155.6 349 37.0
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 1.4e-35 154.5 340 37.1
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.9e-35 154.1 348 36.2
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.9e-35 154.1 339 36.0
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.5e-35 153.7 365 33.7
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 3.2e-35 153.3 337 37.4
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 3.2e-35 153.3 332 37.0
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 5.5e-35 152.5 370 33.5
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 5.5e-35 152.5 368 33.7
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 7.2e-35 152.1 348 35.1
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 9.4e-35 151.8 355 35.2
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 9.4e-35 151.8 340 35.9
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.6e-34 151.0 355 34.4
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.6e-34 151.0 363 34.4
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 2.7e-34 150.2 370 34.1
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 2.7e-34 150.2 335 37.9
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.6e-34 149.8 342 36.8
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.7e-34 149.4 343 36.2
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.4e-33 147.9 343 35.9
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.3e-33 147.1 150 56.7
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 3.9e-33 146.4 385 32.5
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 3.9e-33 146.4 344 36.6
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 2.0e-32 144.1 364 33.8
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.0e-32 144.1 345 34.5
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.6e-32 143.7 355 34.4
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 4.4e-32 142.9 350 34.0
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 4.4e-32 142.9 350 36.3
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 5.7e-32 142.5 330 34.8
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 7.4e-32 142.1 159 54.1
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 9.7e-32 141.7 356 36.2
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.3e-31 141.4 261 36.4
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 2.2e-31 140.6 133 54.9
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 3.7e-31 139.8 356 35.1
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 3.7e-31 139.8 318 34.6
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.7e-31 139.8 364 33.0
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 8.2e-31 138.7 331 36.6
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 8.2e-31 138.7 347 35.4
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.4e-30 137.9 340 32.1
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.4e-30 137.9 114 58.8
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.8e-30 137.5 327 33.3
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.4e-30 137.1 335 31.9
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.4e-30 137.1 364 32.7
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 3.1e-30 136.7 336 32.7
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 3.1e-30 136.7 334 33.5
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 5.3e-30 136.0 213 40.4
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 1.2e-29 134.8 395 33.4
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.5e-29 134.4 355 32.7
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 2.0e-29 134.0 325 32.6
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 2.0e-29 134.0 178 43.3
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.0e-29 134.0 156 48.7
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 2.0e-29 134.0 353 33.7
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 2.6e-29 133.7 366 31.7
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.4e-29 133.3 331 30.8
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 3.4e-29 133.3 198 43.9
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 4.5e-29 132.9 343 33.5
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 5.9e-29 132.5 213 43.7
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 5.9e-29 132.5 366 35.0
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 7.7e-29 132.1 367 33.0
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.0e-28 131.7 177 45.2
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.9e-28 130.2 335 32.5
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.9e-28 130.2 336 35.1
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 3.8e-28 129.8 126 53.2
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 3.8e-28 129.8 161 49.1
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 6.5e-28 129.0 158 47.5
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 1.1e-27 128.3 341 32.3
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 4.2e-27 126.3 332 32.5
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.5e-27 125.9 335 33.7
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 9.4e-27 125.2 180 44.4
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 1.2e-26 124.8 115 55.7
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.6e-26 124.4 231 39.0
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.1e-26 124.0 330 33.3
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 2.7e-26 123.6 235 40.0
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.7e-26 123.6 153 47.1
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 4.7e-26 122.9 332 34.3
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 6.1e-26 122.5 145 49.0
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.0e-25 121.7 365 31.2
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.3e-25 120.6 355 29.3
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 3.9e-25 119.8 124 58.1
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 6.7e-25 119.0 117 57.3
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 6.7e-25 119.0 117 57.3
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.1e-24 118.2 271 36.5
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.1e-24 118.2 227 35.7
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.5e-24 117.9 115 57.4
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.5e-24 117.9 332 31.3
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 2.6e-24 117.1 198 45.5
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 3.3e-24 116.7 271 36.5
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 7.4e-24 115.5 168 41.1
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 9.7e-24 115.2 274 33.6
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.7e-23 114.4 276 35.1
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.7e-23 114.4 167 44.3
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 2.2e-23 114.0 335 31.3
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 6.3e-23 112.5 319 33.9
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 8.2e-23 112.1 111 52.3
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 8.2e-23 112.1 111 52.3
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 1.4e-22 111.3 106 55.7
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.8e-22 110.9 181 44.8
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 4.5e-21 106.3 110 51.8
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.7e-20 104.4 111 49.5
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 3.8e-20 103.2 188 39.4
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 5.0e-20 102.8 289 32.2
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 1.9e-19 100.9 110 50.0
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.9e-19 100.9 342 28.1
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.9e-19 100.9 276 34.1
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 5.5e-19 99.4 141 41.8
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 9.4e-19 98.6 153 40.5
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 9.4e-19 98.6 177 42.4
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 2.1e-18 97.4 207 33.3
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 3.6e-18 96.7 305 32.5
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 4.7e-18 96.3 290 30.3
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 4.7e-18 96.3 290 30.3
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.0e-17 95.1 252 32.9
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.0e-17 95.1 109 41.3
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.3e-17 94.0 73 67.1
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 2.0e-16 90.9 173 35.3
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 2.6e-16 90.5 293 28.3
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 7.5e-16 89.0 108 47.2
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 7.5e-16 89.0 103 47.6
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 9.7e-16 88.6 115 43.5
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 1.3e-15 88.2 85 48.2
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.3e-15 88.2 73 63.0
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.2e-15 87.4 130 36.9
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 3.7e-15 86.7 143 39.9
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.3e-12 78.2 236 31.4
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 4.2e-11 73.2 124 38.7
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 2.1e-10 70.9 192 35.4
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 6.1e-10 69.3 128 34.4
BolC1t02621H Brassica oleracea HOM05D000032 ORTHO05D024508 1.5e-08 64.7 66 60.6
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 9.1e-06 55.5 42 69.0


User provided reference genes

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