Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 0.0e+00 2344.7 1153 100.0
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 0.0e+00 1931.4 1120 85.4
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 0.0e+00 1818.9 1118 80.3
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 0.0e+00 1622.4 1127 73.3
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 0.0e+00 1610.1 1126 72.8
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 0.0e+00 1516.5 1126 70.3
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 0.0e+00 1516.5 1126 70.3
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 0.0e+00 1510.7 1130 70.1
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 0.0e+00 1502.6 1129 69.5
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 0.0e+00 1491.5 1129 69.7
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 0.0e+00 1481.8 1137 68.8
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 0.0e+00 1423.7 1123 66.5
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 0.0e+00 1157.5 1143 54.6
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 5.3e-226 788.9 529 74.9
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 7.5e-204 715.3 1235 38.0
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 6.4e-203 712.2 1222 39.0
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 2.7e-201 706.8 1221 38.8
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 3.5e-201 706.4 1217 39.1
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 4.6e-201 706.1 1222 38.4
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 2.9e-195 686.8 1254 37.2
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 5.6e-191 672.5 1240 37.8
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 5.2e-189 666.0 1242 36.6
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 1.5e-188 664.5 1207 38.7
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 2.2e-187 660.6 1209 38.7
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 8.6e-184 648.7 1233 37.0
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 1.9e-183 647.5 1283 35.7
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 9.6e-183 645.2 1229 37.4
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 1.8e-181 641.0 1228 37.2
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 1.2e-180 638.3 1223 36.2
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 1.4e-178 631.3 1247 35.7
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 2.1e-177 627.5 1259 35.7
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.3e-175 620.2 1241 35.8
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 3.6e-174 616.7 1203 36.0
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 2.6e-172 610.5 1200 37.1
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 4.4e-172 609.8 1199 36.9
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 1.6e-169 601.3 1204 36.2
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 1.6e-169 601.3 1217 36.1
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 6.0e-169 599.4 1252 35.0
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 1.1e-167 595.1 1149 35.9
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 7.3e-167 592.4 1219 35.4
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 1.6e-166 591.3 1257 34.6
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 9.0e-165 585.5 1225 34.6
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 1.5e-164 584.7 1207 34.4
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 2.6e-164 583.9 1230 34.2
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 1.9e-162 577.8 1217 34.6
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 7.9e-161 572.4 1200 36.1
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 3.3e-159 567.0 1226 33.7
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 9.6e-159 565.5 1228 34.0
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 5.3e-157 559.7 1208 35.3
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 1.5e-156 558.1 1230 32.8
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 8.4e-155 552.4 1179 34.2
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 1.8e-152 544.7 1268 32.8
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 1.5e-151 541.6 1221 32.0
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 1.5e-151 541.6 1142 34.5
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 2.4e-149 534.3 1206 33.9
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 9.0e-149 532.3 1166 33.3
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 1.5e-148 531.6 1212 33.2
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 3.4e-148 530.4 1165 33.6
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.8e-144 518.1 1192 32.6
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 1.9e-143 514.6 1250 32.1
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 1.9e-143 514.6 1145 32.2
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 3.7e-142 510.4 1230 32.9
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 4.8e-142 510.0 1241 31.4
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 2.6e-140 504.2 1223 31.2
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.4e-138 498.4 1293 30.6
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 9.4e-138 495.7 1213 31.6
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 4.3e-135 486.9 1224 31.3
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 1.7e-134 485.0 1205 32.1
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 2.0e-132 478.0 1073 34.0
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 1.4e-130 471.9 1150 31.5
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 3.6e-129 467.2 1205 32.6
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 1.4e-125 455.3 982 33.7
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 2.2e-123 448.0 1213 30.5
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 1.8e-120 438.3 1065 32.5
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 1.7e-118 431.8 1058 32.5
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 2.2e-110 404.8 1226 30.2
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 1.5e-98 365.5 1207 27.9
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 5.7e-95 353.6 1163 28.6
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 2.4e-93 348.2 396 47.2
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 5.9e-92 343.6 803 32.6
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 6.2e-89 333.6 772 33.7
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 1.8e-88 332.0 631 37.2
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 6.8e-88 330.1 496 41.1
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 6.4e-86 323.6 1175 27.4
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 7.8e-84 316.6 404 45.5
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 8.6e-83 313.2 835 32.3
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 8.6e-83 313.2 455 39.3
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 9.5e-82 309.7 442 39.8
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.1e-76 292.0 351 48.4
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 8.1e-73 280.0 1223 25.2
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 4.4e-71 274.2 356 43.3
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 8.4e-70 270.0 804 28.5
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 4.6e-68 264.2 814 28.3
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 1.5e-66 259.2 388 39.7
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.1e-60 238.8 358 43.3
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 2.1e-60 238.8 295 44.1
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.9e-59 234.6 267 49.1
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 7.1e-53 213.8 650 28.8
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 3.0e-51 208.4 443 33.4
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.9e-51 208.0 262 46.9
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 1.7e-46 192.6 354 34.2
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 8.4e-46 190.3 479 30.3
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 1.3e-38 166.4 659 25.8
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 6.5e-38 164.1 202 47.5
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 5.5e-37 161.0 475 26.9
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 3.9e-35 154.8 368 31.2
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 8.7e-35 153.7 428 30.6
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 4.2e-29 134.8 580 26.6
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 3.6e-28 131.7 593 25.1
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 6.3e-25 120.9 302 31.8
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 5.3e-24 117.9 122 50.8
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 5.0e-14 84.7 198 32.3
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 8.5e-14 84.0 85 47.1
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 8.8e-11 73.9 202 28.7
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 1.1e-10 73.6 49 63.3
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 3.7e-09 68.6 263 25.5


User provided reference genes

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