Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.7e-159 566.2 342 100.0
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.5e-147 525.8 340 92.1
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 5.2e-137 491.5 346 87.9
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.9e-132 475.3 334 82.0
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 9.9e-120 434.1 334 78.4
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 6.7e-116 421.4 341 75.4
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 1.1e-115 420.6 344 79.9
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 2.1e-114 416.4 344 79.1
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 4.0e-113 412.1 352 71.0
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 9.9e-112 407.5 378 68.5
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 1.7e-111 406.8 340 78.8
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 1.2e-109 400.6 375 72.5
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 5.3e-105 385.2 306 71.2
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.5e-104 383.6 331 68.0
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.3e-87 327.4 302 67.9
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 1.0e-84 317.8 326 62.0
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 3.9e-84 315.8 348 58.9
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 3.9e-84 315.8 326 61.3
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.5e-80 303.9 304 66.8
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.6e-80 303.1 308 64.9
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 9.4e-78 294.7 306 63.4
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.4e-76 290.8 307 57.0
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 2.8e-74 283.1 305 63.3
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 6.5e-71 271.9 327 48.6
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 8.5e-71 271.6 327 55.0
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 2.5e-70 270.0 325 53.5
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 4.2e-70 269.2 331 48.3
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-69 267.7 293 54.6
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.7e-69 266.5 326 47.9
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 4.7e-69 265.8 327 52.9
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.4e-68 264.2 327 52.9
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 1.8e-68 263.8 330 52.4
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 6.7e-68 261.9 325 52.9
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 5.7e-67 258.8 327 47.4
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.1e-65 254.6 324 52.8
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-65 254.2 295 56.3
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.4e-65 254.2 321 46.4
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.8e-65 253.8 286 58.0
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 1.8e-65 253.8 330 51.5
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 2.0e-64 250.4 286 59.1
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 4.5e-64 249.2 328 49.1
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 7.7e-64 248.4 321 46.1
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.0e-63 248.1 323 46.4
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 1.7e-63 247.3 324 46.3
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 2.9e-63 246.5 327 48.3
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 3.8e-63 246.1 296 56.8
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 1.1e-62 244.6 327 48.3
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 1.1e-62 244.6 331 43.8
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 2.5e-62 243.4 327 56.0
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.6e-61 240.7 329 49.2
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.6e-61 240.7 333 45.0
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.1e-61 240.4 327 45.3
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 2.1e-61 240.4 332 51.2
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 6.1e-61 238.8 319 53.3
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 1.0e-60 238.0 335 47.5
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 1.0e-60 238.0 329 44.1
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.8e-60 237.3 329 45.3
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 5.2e-60 235.7 329 45.3
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.2e-59 234.6 332 53.6
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.2e-59 234.6 329 43.8
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 1.2e-59 234.6 330 53.9
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.2e-59 234.6 322 44.7
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.5e-59 234.2 329 48.6
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 1.5e-59 234.2 330 49.1
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 4.4e-59 232.6 329 48.0
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 4.4e-59 232.6 322 45.3
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 7.5e-59 231.9 326 46.3
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 2.2e-58 230.3 330 47.6
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 3.7e-58 229.6 334 49.1
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 3.7e-58 229.6 325 43.1
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 2.4e-57 226.9 331 44.1
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 5.4e-57 225.7 326 44.2
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.2e-56 224.6 316 47.2
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 2.0e-56 223.8 326 44.5
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 2.7e-56 223.4 323 46.4
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 4.5e-56 222.6 331 47.7
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 4.5e-56 222.6 325 42.5
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 5.9e-56 222.2 328 43.0
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 7.7e-56 221.9 327 42.8
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.7e-55 220.7 324 42.0
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 2.5e-54 216.9 318 42.5
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 2.5e-54 216.9 382 38.7
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 3.3e-54 216.5 335 45.4
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 5.5e-54 215.7 331 42.6
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 7.2e-54 215.3 329 45.9
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 2.8e-53 213.4 330 48.8
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 2.8e-53 213.4 327 48.3
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 8.0e-53 211.8 330 49.1
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.8e-52 210.7 329 39.8
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 5.2e-52 209.1 320 41.6
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.0e-51 207.2 327 47.4
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.0e-51 207.2 327 47.4
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 4.4e-51 206.1 330 41.5
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 4.4e-51 206.1 326 42.9
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 4.4e-51 206.1 397 40.8
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 5.7e-51 205.7 284 49.3
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 7.5e-51 205.3 329 41.9
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 9.8e-51 204.9 326 40.2
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 9.8e-51 204.9 330 47.3
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.3e-50 204.5 293 48.1
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 8.3e-50 201.8 391 36.1
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.8e-49 200.7 335 49.3
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 7.0e-49 198.7 326 47.5
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 9.2e-49 198.4 330 46.4
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.0e-47 194.9 328 46.6
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 1.3e-47 194.5 391 37.6
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 2.3e-47 193.7 260 44.2
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 2.3e-47 193.7 327 38.5
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.9e-47 193.4 328 46.3
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 2.9e-47 193.4 388 44.3
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 2.9e-47 193.4 319 43.3
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 1.5e-46 191.0 323 44.6
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 1.5e-46 191.0 304 40.5
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 5.6e-46 189.1 330 47.0
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 5.6e-46 189.1 326 43.3
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 2.1e-45 187.2 319 41.1
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 5.8e-43 179.1 243 53.5
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 5.8e-43 179.1 339 39.8
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 2.9e-42 176.8 368 35.3
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 3.7e-42 176.4 337 40.7
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.4e-41 174.5 324 37.7
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 1.9e-41 174.1 335 36.4
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 5.4e-41 172.6 333 38.7
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.6e-40 171.0 339 37.5
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 2.0e-40 170.6 327 37.6
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 7.3e-38 162.2 286 41.3
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.2e-37 161.4 269 39.4
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.6e-37 161.0 352 36.1
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.1e-36 158.3 389 34.4
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 5.2e-36 156.0 226 50.4
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 5.2e-36 156.0 226 50.4
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 5.8e-35 152.5 260 50.4
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 3.2e-33 146.7 201 44.8
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 4.6e-32 142.9 259 49.4
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 3.3e-30 136.7 268 38.1
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 7.3e-30 135.6 211 48.3
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.6e-29 134.4 288 33.7
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 6.2e-29 132.5 121 53.7
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 1.5e-27 127.9 119 56.3
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 2.6e-27 127.1 309 32.4
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 4.9e-26 122.9 172 45.3
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 2.4e-25 120.6 207 35.7
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 7.1e-25 119.0 226 38.5
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 2.1e-24 117.5 124 52.4
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.1e-23 112.8 182 39.0
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 8.6e-23 112.1 110 54.5
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.5e-22 110.5 122 53.3
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.5e-22 110.5 122 53.3
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 3.6e-21 106.7 306 33.0
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 8.1e-21 105.5 121 45.5
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-20 104.4 122 47.5
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.0e-20 103.2 374 27.0
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 9.9e-19 98.6 111 49.5
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 9.9e-19 98.6 111 49.5
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 2.2e-18 97.4 125 43.2
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 2.2e-18 97.4 267 42.7
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 3.8e-18 96.7 245 33.5
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 5.4e-17 92.8 178 36.0
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 8.7e-15 85.5 324 27.5
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.1e-14 85.1 373 27.6
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.9e-14 84.3 105 48.6
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 6.2e-13 79.3 131 41.2
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 3.4e-11 73.6 132 40.2
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 1.7e-10 71.2 85 44.7
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.2e-10 70.9 153 34.6
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 2.2e-10 70.9 221 29.4
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 4.9e-10 69.7 86 47.7
BcaB02g06539 Brassica carinata HOM05D003707 ORTHO05D004309 1.9e-09 67.8 71 60.6
BraA09t41558Z Brassica rapa HOM05D065654 ORTHO05D032288 3.2e-09 67.0 234 31.6
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 3.2e-09 67.0 146 39.0
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 3.2e-09 67.0 60 53.3
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 3.2e-09 67.0 191 30.4
A09p61960 Brassica napus HOM05D065654 ORTHO05D032288 5.4e-09 66.2 234 31.2
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 7.8e-08 62.4 125 33.6
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 5.1e-07 59.7 40 72.5
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 5.1e-07 59.7 79 40.5
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 1.1e-06 58.5 50 58.0
SMO174G0209 Selaginella moellendorffii HOM05D019185 ORTHO05D031160 7.3e-06 55.8 82 39.0
CsaV3_2G029910 Cucumis sativus L. HOM05D003707 ORTHO05D004309 9.6e-06 55.5 84 38.1


User provided reference genes

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