Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 3.6e-67 258.1 125 100.0
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 7.3e-20 100.9 48 97.9
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 6.2e-19 97.8 48 95.8
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.8e-18 96.3 48 93.8
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 1.2e-17 93.6 48 89.6
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 1.5e-17 93.2 48 91.7
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 3.4e-17 92.0 48 89.6
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 3.4e-17 92.0 48 89.6
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 3.4e-17 92.0 48 89.6
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 3.4e-17 92.0 48 89.6
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 3.4e-17 92.0 48 89.6
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 5.8e-17 91.3 45 93.3
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.3e-16 90.1 45 91.1
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 2.2e-16 89.4 48 87.5
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 2.9e-16 89.0 48 87.5
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 2.9e-16 89.0 48 87.5
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 2.9e-16 89.0 48 87.5
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 2.9e-16 89.0 48 87.5
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 2.9e-16 89.0 48 87.5
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 2.9e-16 89.0 48 87.5
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 2.9e-16 89.0 48 85.4
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 2.9e-16 89.0 48 85.4
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 2.9e-16 89.0 48 85.4
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 2.9e-16 89.0 48 85.4
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 3.7e-16 88.6 45 88.9
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 3.7e-16 88.6 50 80.0
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 3.7e-16 88.6 50 80.0
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 3.7e-16 88.6 49 83.7
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 4.9e-16 88.2 64 67.2
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 4.9e-16 88.2 48 83.3
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 4.9e-16 88.2 50 80.0
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 4.9e-16 88.2 50 80.0
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 6.4e-16 87.8 53 77.4
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 8.3e-16 87.4 45 88.9
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 8.3e-16 87.4 48 83.3
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 8.3e-16 87.4 48 81.2
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 8.3e-16 87.4 48 81.2
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 8.3e-16 87.4 48 81.2
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 8.3e-16 87.4 48 81.2
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 8.3e-16 87.4 48 81.2
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 8.3e-16 87.4 48 81.2
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 1.4e-15 86.7 48 85.4
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 1.4e-15 86.7 48 81.2
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 1.4e-15 86.7 48 81.2
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.4e-15 86.7 48 79.2
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 1.9e-15 86.3 45 88.9
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 1.9e-15 86.3 49 81.6
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 1.9e-15 86.3 64 67.2
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 1.9e-15 86.3 48 81.2
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 1.9e-15 86.3 49 79.6
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 2.4e-15 85.9 48 79.2
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.4e-15 85.9 48 79.2
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.4e-15 85.9 48 79.2
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 2.4e-15 85.9 48 83.3
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 2.4e-15 85.9 48 83.3
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 2.4e-15 85.9 48 83.3
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 2.4e-15 85.9 48 81.2
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 2.4e-15 85.9 48 83.3
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.2e-15 85.5 48 79.2
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 4.1e-15 85.1 48 79.2
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 5.4e-15 84.7 48 81.2
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 5.4e-15 84.7 48 81.2
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 5.4e-15 84.7 48 81.2
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 5.4e-15 84.7 48 79.2
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 5.4e-15 84.7 48 83.3
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 7.0e-15 84.3 48 81.2
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 7.0e-15 84.3 48 81.2
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 7.0e-15 84.3 48 79.2
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 7.0e-15 84.3 48 79.2
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 7.0e-15 84.3 48 79.2
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 7.0e-15 84.3 48 81.2
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 7.0e-15 84.3 48 81.2
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 9.2e-15 84.0 48 81.2
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 9.2e-15 84.0 48 81.2
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 9.2e-15 84.0 48 81.2
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 9.2e-15 84.0 48 81.2
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 9.2e-15 84.0 48 77.1
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 9.2e-15 84.0 48 79.2
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 9.2e-15 84.0 48 79.2
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 9.2e-15 84.0 49 77.6
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 9.2e-15 84.0 48 81.2
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 9.2e-15 84.0 48 79.2
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 9.2e-15 84.0 48 79.2
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 1.2e-14 83.6 49 79.6
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.2e-14 83.6 48 79.2
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 1.2e-14 83.6 52 73.1
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-14 83.6 48 77.1
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-14 83.6 50 74.0
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-14 83.6 48 77.1
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-14 83.6 48 77.1
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-14 83.6 48 77.1
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-14 83.6 48 77.1
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-14 83.6 48 77.1
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-14 83.6 48 77.1
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.2e-14 83.6 48 79.2
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 1.6e-14 83.2 48 79.2
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.6e-14 83.2 49 75.5
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 1.6e-14 83.2 48 79.2
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.6e-14 83.2 48 79.2
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 2.1e-14 82.8 49 75.5
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 2.1e-14 82.8 48 77.1
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 2.7e-14 82.4 48 79.2
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 2.7e-14 82.4 48 77.1
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 3.5e-14 82.0 48 77.1
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 3.5e-14 82.0 48 79.2
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 3.5e-14 82.0 48 77.1
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 3.5e-14 82.0 48 77.1
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.5e-14 82.0 48 77.1
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 3.5e-14 82.0 48 77.1
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 3.5e-14 82.0 48 77.1
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 3.5e-14 82.0 48 77.1
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 3.5e-14 82.0 48 79.2
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 3.5e-14 82.0 48 77.1
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 3.5e-14 82.0 48 79.2
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 3.5e-14 82.0 48 77.1
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 3.5e-14 82.0 48 77.1
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 3.5e-14 82.0 48 77.1
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 3.5e-14 82.0 48 77.1
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 4.6e-14 81.6 48 79.2
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 4.6e-14 81.6 48 77.1
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 4.6e-14 81.6 48 77.1
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 4.6e-14 81.6 48 77.1
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 4.6e-14 81.6 48 77.1
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 4.6e-14 81.6 48 77.1
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 6.0e-14 81.3 48 75.0
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 6.0e-14 81.3 49 73.5
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 6.0e-14 81.3 48 79.2
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 6.0e-14 81.3 48 79.2
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.8e-14 80.9 48 75.0
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 1.3e-13 80.1 48 77.1
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 1.3e-13 80.1 48 75.0
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 1.7e-13 79.7 49 75.5
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 1.7e-13 79.7 49 73.5
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 2.3e-13 79.3 48 77.1
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 2.3e-13 79.3 48 75.0
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 3.0e-13 79.0 48 77.1
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 3.0e-13 79.0 48 77.1
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 3.9e-13 78.6 48 72.9
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 3.9e-13 78.6 48 72.9
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 3.9e-13 78.6 48 77.1
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 5.1e-13 78.2 48 72.9
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 5.1e-13 78.2 48 72.9
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 5.1e-13 78.2 49 77.6
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 6.6e-13 77.8 48 72.9
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 6.6e-13 77.8 48 72.9
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 1.1e-12 77.0 48 70.8
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 1.5e-12 76.6 49 71.4
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 1.5e-12 76.6 48 75.0
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 1.9e-12 76.3 49 75.5
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 2.5e-12 75.9 44 79.5
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 2.5e-12 75.9 48 70.8
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.3e-12 75.5 44 72.7
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 5.6e-12 74.7 48 66.7
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 7.3e-12 74.3 50 70.0
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.5e-12 73.9 48 68.8
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 3.6e-11 72.0 43 74.4
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 3.4e-09 65.5 47 61.7


User provided reference genes

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