Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.7e-197 693.0 505 100.0
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.5e-148 530.4 504 82.5
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 6.8e-141 505.0 520 81.0
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 3.7e-131 472.6 426 68.1
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 5.6e-127 458.8 419 79.0
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 3.5e-113 412.9 443 67.3
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 6.0e-113 412.1 422 69.4
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 4.7e-110 402.5 428 63.6
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.0e-96 358.2 428 54.0
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 1.4e-90 337.8 428 55.8
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 3.1e-85 320.1 419 50.6
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 5.3e-85 319.3 434 51.2
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 2.2e-83 313.9 428 51.2
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 1.3e-80 304.7 416 49.3
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 1.1e-79 301.6 403 51.6
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 2.5e-79 300.4 403 51.6
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 8.1e-78 295.4 468 50.9
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 8.1e-78 295.4 414 48.1
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 1.4e-77 294.7 417 46.3
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 4.5e-76 289.7 428 47.9
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 5.8e-76 289.3 434 47.0
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 7.6e-76 288.9 427 54.3
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 9.9e-76 288.5 430 47.9
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 4.2e-74 283.1 457 41.4
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 9.3e-74 282.0 469 50.5
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.6e-73 281.2 409 53.8
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 2.7e-73 280.4 413 45.8
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 6.0e-73 279.3 433 46.4
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 6.0e-73 279.3 433 44.3
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 1.0e-72 278.5 442 46.4
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 1.3e-72 278.1 415 48.7
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 2.3e-72 277.3 409 53.5
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 8.7e-72 275.4 411 47.0
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 3.3e-71 273.5 425 57.2
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 7.4e-71 272.3 422 46.2
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.3e-70 271.6 452 46.9
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.7e-70 270.0 447 47.2
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 3.7e-70 270.0 465 43.0
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 8.1e-70 268.9 401 45.9
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 1.1e-69 268.5 422 47.4
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.4e-69 268.1 405 43.2
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 1.4e-69 268.1 403 43.4
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 2.4e-69 267.3 417 48.4
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 2.4e-69 267.3 448 47.1
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 3.1e-69 266.9 424 45.3
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.0e-69 266.5 422 42.4
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 4.0e-69 266.5 438 48.2
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 5.3e-69 266.2 421 44.7
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 1.5e-68 264.6 423 42.8
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.5e-68 264.6 407 46.2
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 2.6e-68 263.8 424 42.7
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 5.8e-68 262.7 436 46.8
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 1.7e-67 261.2 431 51.0
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 4.9e-67 259.6 412 42.7
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 6.5e-67 259.2 406 46.1
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 1.9e-66 257.7 416 42.3
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.5e-66 257.3 418 43.1
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 2.5e-66 257.3 428 43.0
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 1.2e-65 255.0 413 47.2
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.6e-65 254.6 418 43.1
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 2.1e-65 254.2 411 46.0
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 2.7e-65 253.8 411 41.4
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 3.5e-65 253.4 450 39.8
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 1.8e-64 251.1 410 46.6
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.0e-64 250.4 436 45.9
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 3.9e-64 250.0 495 44.2
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 3.9e-64 250.0 389 41.9
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 5.1e-64 249.6 408 43.9
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 5.1e-64 249.6 440 39.8
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 4.3e-63 246.5 419 41.5
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 5.7e-63 246.1 415 39.8
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 7.4e-63 245.7 414 41.3
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 7.4e-63 245.7 497 40.8
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 2.1e-62 244.2 430 41.4
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 2.8e-62 243.8 400 42.0
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 1.2e-60 238.4 402 47.3
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 2.9e-59 233.8 386 46.6
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 5.0e-59 233.0 421 39.7
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 6.5e-59 232.6 377 44.3
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 8.5e-59 232.3 421 39.7
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.5e-58 230.7 427 39.1
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 1.6e-57 228.0 431 37.6
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 3.6e-57 226.9 422 37.2
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 1.3e-56 224.9 434 38.7
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 2.3e-56 224.2 407 39.1
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 3.0e-56 223.8 407 40.8
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 3.3e-55 220.3 402 39.1
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 4.3e-55 219.9 392 40.6
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 1.6e-54 218.0 383 46.7
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 2.2e-54 217.6 422 38.4
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 6.9e-53 212.6 402 38.6
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 2.0e-52 211.1 348 45.7
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.2e-51 207.6 453 38.0
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 8.5e-51 205.7 427 37.5
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 2.5e-50 204.1 385 39.5
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 4.2e-50 203.4 418 40.0
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 1.2e-49 201.8 559 36.9
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 3.0e-48 197.2 397 39.3
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.1e-47 195.3 385 42.6
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 2.6e-47 194.1 421 37.5
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 3.3e-47 193.7 418 37.8
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 5.7e-47 193.0 400 40.5
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.4e-45 187.6 421 38.7
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 5.3e-45 186.4 383 37.9
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 6.9e-45 186.0 461 30.4
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 7.7e-44 182.6 354 39.8
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 1.3e-43 181.8 301 51.2
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.7e-43 181.4 422 38.2
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 5.5e-42 176.4 294 41.8
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 3.1e-37 160.6 246 43.9
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.0e-35 155.6 360 47.8
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 3.1e-29 134.0 177 46.9
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 2.7e-28 131.0 468 36.3
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.7e-28 131.0 98 73.5
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 3.5e-28 130.6 223 44.8
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 3.5e-28 130.6 418 34.4
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 5.9e-28 129.8 427 34.4
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.0e-27 129.0 235 38.7
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 2.9e-27 127.5 264 37.9
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.9e-26 124.8 107 64.5
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.8e-24 118.2 432 32.2
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 8.8e-24 115.9 91 65.9
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 5.7e-23 113.2 199 41.7
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 5.5e-18 96.7 404 33.4
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 1.8e-16 91.7 103 47.6
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.6e-15 87.8 76 59.2
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 2.8e-14 84.3 320 27.5
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 1.4e-13 82.0 203 31.5
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 8.6e-11 72.8 58 65.5
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.9e-10 71.6 67 53.7
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 4.7e-09 67.0 54 55.6
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 5.2e-08 63.5 54 51.9
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 2.0e-07 61.6 96 40.6
Cre12.g539750 Chlamydomonas reinhardtii HOM05D005355 ORTHO05D006591 1.3e-06 58.9 82 43.9
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 2.2e-06 58.2 258 28.7


User provided reference genes

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