Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G08028 Arabidopsis thaliana HOM05D009779 ORTHO05D011114 8.1e-44 179.9 82 100.0
Carub.0006s2661 Capsella rubella HOM05D009779 ORTHO05D011114 3.3e-29 131.3 82 72.0
Carub.0006s2664 Capsella rubella HOM05D009157 ORTHO05D011114 6.7e-22 107.1 81 54.3
AL1G48580 Arabidopsis lyrata HOM05D009157 ORTHO05D011114 6.5e-17 90.5 79 54.4
CARHR257070 Cardamine hirsuta HOM05D018394 ORTHO05D011114 7.4e-13 77.0 79 46.8
AT2G40995 Arabidopsis thaliana HOM05D009157 ORTHO05D011114 2.4e-11 72.0 79 46.8
A06p16760 Brassica napus HOM05D009157 ORTHO05D011114 2.4e-11 72.0 82 41.5
AL872U10010 Arabidopsis lyrata HOM05D009157 ORTHO05D011114 6.9e-11 70.5 80 48.8
AT2G20465 Arabidopsis thaliana HOM05D018394 ORTHO05D038745 6.9e-11 70.5 87 46.0
BraA06t24784Z Brassica rapa HOM05D009157 ORTHO05D011114 6.9e-11 70.5 82 40.2
Thhalv10016013m.g Eutrema salsugineum HOM05D009157 ORTHO05D011114 6.9e-11 70.5 80 46.2
AT1G58055 Arabidopsis thaliana HOM05D008895 ORTHO05D010761 2.0e-10 68.9 80 47.5
A03p24160 Brassica napus HOM05D009779 ORTHO05D013534 1.3e-09 66.2 84 42.9
BraA03t11625Z Brassica rapa HOM05D009779 ORTHO05D013534 1.3e-09 66.2 84 42.9
BraA07t29157Z Brassica rapa HOM05D009997 ORTHO05D011114 1.3e-09 66.2 81 43.2
CARHR136110 Cardamine hirsuta HOM05D009157 ORTHO05D011114 1.7e-09 65.9 78 38.5
BolC7t42591H Brassica oleracea HOM05D009997 ORTHO05D011114 2.2e-09 65.5 81 43.2
C03p28770 Brassica napus HOM05D009779 ORTHO05D013534 2.9e-09 65.1 84 42.9
BolC3t15236H Brassica oleracea HOM05D009779 ORTHO05D013534 2.9e-09 65.1 84 42.9
CARHR247500 Cardamine hirsuta HOM05D022922 ORTHO05D024512 6.5e-09 63.9 80 46.2
CARHR037560 Cardamine hirsuta HOM05D009157 ORTHO05D011114 8.4e-09 63.5 78 42.3
BolC5t30635H Brassica oleracea HOM05D009157 ORTHO05D011114 1.4e-08 62.8 79 39.2
A06p16740 Brassica napus HOM05D009157 ORTHO05D011114 1.9e-08 62.4 78 38.5
BraA06t24778Z Brassica rapa HOM05D009157 ORTHO05D011114 1.9e-08 62.4 82 35.4
Carub.0003s2968 Capsella rubella HOM05D018394 ORTHO05D023668 2.5e-08 62.0 82 40.2
BraA06t24782Z Brassica rapa HOM05D009157 ORTHO05D011114 3.2e-08 61.6 78 37.2
A03p09040 Brassica napus HOM05D009779 ORTHO05D013534 9.3e-08 60.1 86 41.9
C03p10520 Brassica napus HOM05D009779 ORTHO05D013534 9.3e-08 60.1 86 41.9
BolC3t15237H Brassica oleracea HOM05D009779 ORTHO05D013534 9.3e-08 60.1 86 41.9
Carub.0003s2867 Capsella rubella HOM05D009157 ORTHO05D011114 1.2e-07 59.7 81 40.7
Carub.0003s3485 Capsella rubella HOM05D024755 ORTHO05D038745 1.2e-07 59.7 86 40.7
A09p26810 Brassica napus HOM05D009779 ORTHO05D013534 1.6e-07 59.3 86 41.9
BraA09t38252Z Brassica rapa HOM05D009779 ORTHO05D013534 1.6e-07 59.3 86 41.9
BolC5t31817H Brassica oleracea HOM05D009779 ORTHO05D013534 2.1e-07 58.9 79 43.0
Carub.0007s3316 Capsella rubella HOM05D009997 ORTHO05D013470 2.1e-07 58.9 82 40.2
A04p32550 Brassica napus HOM05D011156 ORTHO05D033405 3.5e-07 58.2 85 44.7
C03p28790 Brassica napus HOM05D009779 ORTHO05D013534 3.5e-07 58.2 82 41.5
C08p04600 Brassica napus HOM05D009157 ORTHO05D028203 3.5e-07 58.2 74 41.9
BolC8t47264H Brassica oleracea HOM05D009157 ORTHO05D028203 3.5e-07 58.2 74 41.9
BraA04t18719Z Brassica rapa HOM05D011156 ORTHO05D033405 3.5e-07 58.2 85 44.7
BolC3t13534H Brassica oleracea HOM05D009779 ORTHO05D013534 6.1e-07 57.4 85 41.2
AL2G14490 Arabidopsis lyrata HOM05D012646 ORTHO05D017422 7.9e-07 57.0 85 38.8
AL2G17930 Arabidopsis lyrata HOM05D008895 ORTHO05D010761 7.9e-07 57.0 80 42.5
AL1G27870 Arabidopsis lyrata HOM05D009997 ORTHO05D013470 1.0e-06 56.6 81 37.0
Thhalv10015154m.g Eutrema salsugineum HOM05D009997 ORTHO05D013470 1.0e-06 56.6 82 37.8
A08p04330 Brassica napus HOM05D009157 ORTHO05D028203 1.3e-06 56.2 74 39.2
BolC7t46360H Brassica oleracea HOM05D022922 ORTHO05D024512 1.8e-06 55.8 87 42.5
BolC4t28529H Brassica oleracea HOM05D011156 ORTHO05D033405 2.3e-06 55.5 85 43.5
BraA03t10228Z Brassica rapa HOM05D009779 ORTHO05D013534 2.3e-06 55.5 82 41.5
BcaB03g14524 Brassica carinata HOM05D009997 ORTHO05D013470 3.0e-06 55.1 86 34.9
BraA08t32459Z Brassica rapa HOM05D009157 ORTHO05D028203 3.0e-06 55.1 74 39.2
Carub.0003s3488 Capsella rubella HOM05D024755 ORTHO05D023668 3.9e-06 54.7 81 37.0
AL3G53460 Arabidopsis lyrata HOM05D024755 ORTHO05D023668 5.1e-06 54.3 77 44.2
AT5G42232 Arabidopsis thaliana HOM05D008895 ORTHO05D010761 5.1e-06 54.3 82 39.0
Carub.0002s0344 Capsella rubella HOM05D012646 ORTHO05D114488 5.1e-06 54.3 86 39.5
Carub.0003s3487 Capsella rubella HOM05D024755 ORTHO05D023668 5.1e-06 54.3 81 37.0
BNapus_Darmor_BZH_scaffold_232p00090 Brassica napus HOM05D009157 ORTHO05D011114 6.7e-06 53.9 79 40.5
C02p19560 Brassica napus HOM05D009157 ORTHO05D011114 6.7e-06 53.9 79 40.5
BolC2t08093H Brassica oleracea HOM05D009157 ORTHO05D011114 6.7e-06 53.9 79 40.5
Carub.0002s0345 Capsella rubella HOM05D012646 ORTHO05D114365 6.7e-06 53.9 88 37.5
AL6G39510 Arabidopsis lyrata HOM05D008895 ORTHO05D031419 8.7e-06 53.5 81 40.7
AL8G35590 Arabidopsis lyrata HOM05D009997 ORTHO05D011114 8.7e-06 53.5 75 40.0
Carub.0002s0741 Capsella rubella HOM05D014230 ORTHO05D015926 8.7e-06 53.5 75 44.0


User provided reference genes

Program Settings