Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G07524 Arabidopsis thaliana HOM05D000064 ORTHO05D081671 7.3e-33 143.3 71 100.0
BcaB03g13566 Brassica carinata HOM05D000064 ORTHO05D008287 4.7e-08 60.8 33 81.8
A10p00690 Brassica napus HOM05D000064 ORTHO05D008287 4.7e-08 60.8 33 81.8
BolC5t28858H Brassica oleracea HOM05D000064 ORTHO05D008287 4.7e-08 60.8 33 81.8
BraA10t42346Z Brassica rapa HOM05D000064 ORTHO05D008287 4.7e-08 60.8 33 81.8
CARHR001270 Cardamine hirsuta HOM05D000064 ORTHO05D008287 4.7e-08 60.8 33 81.8
Sp1g01090 Schrenkiella parvula HOM05D000064 ORTHO05D008287 4.7e-08 60.8 33 81.8
AL1G11280 Arabidopsis lyrata HOM05D000064 ORTHO05D008287 6.2e-08 60.5 33 78.8
AT1G01200 Arabidopsis thaliana HOM05D000064 ORTHO05D008287 1.4e-07 59.3 33 78.8
Thhalv10009311m.g Eutrema salsugineum HOM05D000064 ORTHO05D008287 1.8e-07 58.9 33 78.8
Carub.0001s0100 Capsella rubella HOM05D000064 ORTHO05D008287 2.4e-07 58.5 33 75.8
C05p00730 Brassica napus HOM05D000064 ORTHO05D008287 3.1e-07 58.2 33 78.8
FAN06G0565 Fragaria x ananassa HOM05D000064 ORTHO05D008287 5.2e-07 57.4 33 69.7
MD01G1085800 Malus domestica HOM05D000064 ORTHO05D008287 5.2e-07 57.4 33 69.7
MD07G1154900 Malus domestica HOM05D000064 ORTHO05D008287 5.2e-07 57.4 33 69.7
FvH4_7g17190 Fragaria vesca HOM05D000064 ORTHO05D008287 8.9e-07 56.6 33 69.7
FAN01G0515 Fragaria x ananassa HOM05D000064 ORTHO05D204373 8.9e-07 56.6 33 69.7
FAN03G0089 Fragaria x ananassa HOM05D000064 ORTHO05D008287 8.9e-07 56.6 33 69.7
FAN06G1451 Fragaria x ananassa HOM05D000064 ORTHO05D008287 8.9e-07 56.6 33 69.7
Aa31LG1G10570 Aethionema arabicum HOM05D000064 ORTHO05D008287 1.2e-06 56.2 33 72.7
Prupe.2G193600 Prunus persica HOM05D000064 ORTHO05D008287 1.2e-06 56.2 33 66.7
THA.LOC104801359 Tarenaya hassleriana HOM05D000064 ORTHO05D008287 1.2e-06 56.2 33 69.7
Medtr7g117910 Medicago truncatula HOM05D000064 ORTHO05D008287 1.5e-06 55.8 33 66.7
TPR.G4709 Trifolium pratense HOM05D000064 ORTHO05D008287 1.5e-06 55.8 33 66.7
Manes.05G019400 Manihot esculenta HOM05D000064 ORTHO05D008287 2.0e-06 55.5 33 66.7
Atru.chr5.728 Acer truncatum HOM05D000064 ORTHO05D008287 2.6e-06 55.1 33 63.6
arahy.Tifrunner.gnm1.ann1.21BYTM Arachis hypogaea HOM05D000064 ORTHO05D008287 2.6e-06 55.1 33 66.7
arahy.Tifrunner.gnm1.ann1.UG7HDC Arachis hypogaea HOM05D000064 ORTHO05D008287 2.6e-06 55.1 33 66.7
CiPaw.01G079200 Carya illinoinensis HOM05D000064 ORTHO05D008287 2.6e-06 55.1 33 63.6
Potri.002G175700 Populus trichocarpa HOM05D000064 ORTHO05D008287 2.6e-06 55.1 33 63.6
QL08p046222 Quercus lobata HOM05D000064 ORTHO05D008287 2.6e-06 55.1 33 63.6
Glyma.03G259200 Glycine max HOM05D000064 ORTHO05D008287 3.4e-06 54.7 33 63.6
Glyma.07G052800 Glycine max HOM05D000064 ORTHO05D008287 3.4e-06 54.7 33 63.6
Lj3g0027134 Lotus japonicus HOM05D000064 ORTHO05D008287 3.4e-06 54.7 33 63.6
Medtr8g027220 Medicago truncatula HOM05D000064 ORTHO05D008287 3.4e-06 54.7 33 63.6
Psat3g001480 Pisum sativum HOM05D000064 ORTHO05D008287 3.4e-06 54.7 33 63.6
RcHm_v2.0_Chr1g0360581 Rosa chinensis HOM05D000064 ORTHO05D008287 3.4e-06 54.7 33 63.6
TPR.G15902 Trifolium pratense HOM05D000064 ORTHO05D008287 3.4e-06 54.7 33 63.6
arahy.Tifrunner.gnm1.ann1.E4PXPM Arachis hypogaea HOM05D000064 ORTHO05D008287 4.4e-06 54.3 33 63.6
arahy.Tifrunner.gnm1.ann1.HIPE3F Arachis hypogaea HOM05D000064 ORTHO05D008287 4.4e-06 54.3 33 63.6
CSS0022697 Camellia sinensis var. sinensis HOM05D000064 ORTHO05D008287 5.8e-06 53.9 33 63.6
COL.COLO4_06254 Corchorus olitorius HOM05D000064 ORTHO05D008287 5.8e-06 53.9 33 63.6
Manes.01G243000 Manihot esculenta HOM05D000064 ORTHO05D008287 5.8e-06 53.9 33 66.7
Manes.01G266736 Manihot esculenta HOM05D000064 ORTHO05D008287 5.8e-06 53.9 33 66.7
TWI23G0985 Tripterygium wilfordii HOM05D000064 ORTHO05D008287 5.8e-06 53.9 33 60.6
Cpa.g.sc96.70 Carica papaya HOM05D000064 ORTHO05D008287 7.6e-06 53.5 32 65.6
Cfa003764 Carpinus fangiana HOM05D000064 ORTHO05D008287 7.6e-06 53.5 33 63.6
Haze_15703 Corylus avellana HOM05D000064 ORTHO05D008287 7.6e-06 53.5 33 63.6
Dinv34237 Davidia involucrata HOM05D000064 ORTHO05D008287 7.6e-06 53.5 33 63.6
Lalb_Chr17g0342831 Lupinus albus HOM05D000064 ORTHO05D008287 7.6e-06 53.5 33 60.6
CANSAT56G2902 Cannabis sativa HOM05D000064 ORTHO05D008287 9.9e-06 53.1 33 63.6
Nitab4.5_0002527g0040 Nicotiana tabacum HOM05D000064 ORTHO05D008287 9.9e-06 53.1 33 60.6
Solyc01g096220.3 Solanum lycopersicum HOM05D000064 ORTHO05D008287 9.9e-06 53.1 33 63.6
Sopen00g014180 Solanum pennellii HOM05D000064 ORTHO05D008287 9.9e-06 53.1 33 63.6
Sopen01g039980 Solanum pennellii HOM05D000064 ORTHO05D008287 9.9e-06 53.1 33 63.6
TWI14G0683 Tripterygium wilfordii HOM05D000064 ORTHO05D008287 9.9e-06 53.1 33 60.6


User provided reference genes

Program Settings