Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 4.1e-190 667.9 341 100.0
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 1.6e-186 656.0 341 97.1
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 2.6e-181 638.6 328 97.6
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 3.8e-172 608.2 341 91.5
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 5.0e-172 607.8 338 90.5
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 2.0e-165 585.9 336 87.8
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 2.3e-161 572.4 338 85.5
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 2.6e-160 568.9 328 84.1
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.3e-159 566.6 337 84.6
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.3e-159 566.6 337 84.6
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 2.8e-159 565.5 337 84.3
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 2.8e-159 565.5 338 84.3
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 2.8e-159 565.5 328 85.1
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 3.7e-159 565.1 337 84.0
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 8.3e-159 563.9 334 83.8
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 8.3e-159 563.9 328 85.1
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 2.4e-158 562.4 328 84.8
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 4.1e-158 561.6 328 84.8
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 5.4e-158 561.2 335 84.2
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 5.4e-158 561.2 339 81.1
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 2.7e-157 558.9 328 83.2
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 7.3e-155 550.8 328 82.9
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 9.5e-155 550.4 341 79.5
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 1.2e-154 550.1 317 84.9
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 6.8e-153 544.3 329 80.9
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 6.8e-153 544.3 341 78.6
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 1.2e-152 543.5 323 82.4
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 2.0e-152 542.7 317 83.3
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 3.4e-152 542.0 328 81.1
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 3.4e-152 542.0 339 79.6
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 5.7e-152 541.2 328 80.8
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 9.8e-152 540.4 328 81.1
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 1.3e-151 540.0 331 80.1
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 1.7e-151 539.7 338 79.3
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 1.7e-151 539.7 341 79.5
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 2.9e-151 538.9 328 81.1
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 4.9e-151 538.1 319 82.1
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 6.4e-151 537.7 324 81.2
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 1.8e-150 536.2 328 80.5
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 2.4e-150 535.8 322 80.1
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 7.0e-150 534.3 334 78.4
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 9.2e-150 533.9 331 80.1
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 9.2e-150 533.9 331 79.2
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 1.2e-149 533.5 331 79.2
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.2e-149 533.5 331 81.0
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.5e-149 531.9 337 77.7
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.5e-149 531.9 332 78.6
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 3.5e-149 531.9 330 78.8
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 5.9e-149 531.2 327 79.2
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 1.3e-148 530.0 324 80.9
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.7e-148 529.6 337 77.4
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 5.0e-148 528.1 318 81.8
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 2.5e-147 525.8 302 86.1
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 2.5e-147 525.8 340 77.1
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 4.3e-147 525.0 323 78.3
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 2.8e-146 522.3 331 77.0
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.6e-146 521.9 345 75.4
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 3.6e-146 521.9 325 78.5
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 3.6e-146 521.9 322 79.5
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 3.6e-146 521.9 375 70.9
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 6.2e-146 521.2 338 76.6
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 1.0e-145 520.4 320 78.8
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 5.2e-145 518.1 374 71.7
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 5.2e-145 518.1 336 76.5
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 5.2e-145 518.1 338 76.0
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 8.9e-145 517.3 344 75.3
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 1.2e-144 516.9 341 74.5
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.5e-144 516.5 328 76.8
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.5e-144 516.5 338 77.5
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 2.6e-144 515.8 329 76.3
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 4.4e-144 515.0 332 78.0
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-143 513.5 345 74.8
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 2.9e-143 512.3 327 76.1
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 2.9e-143 512.3 334 75.1
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 3.7e-143 511.9 319 80.3
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 8.3e-143 510.8 370 70.0
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 1.1e-142 510.4 320 76.9
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 2.4e-142 509.2 341 73.9
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 5.4e-142 508.1 338 74.6
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.6e-141 506.5 333 74.5
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 2.7e-141 505.8 397 67.5
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 7.8e-141 504.2 322 76.1
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 1.7e-140 503.1 320 75.9
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 5.0e-140 501.5 337 77.4
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 1.9e-139 499.6 322 77.3
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 2.5e-139 499.2 322 77.3
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.2e-138 496.9 377 66.3
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 2.1e-138 496.1 315 76.5
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 4.0e-137 491.9 318 78.0
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 5.8e-136 488.0 328 73.5
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.4e-134 482.6 328 73.2
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 1.2e-133 480.3 327 69.7
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.3e-132 476.1 338 71.6
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.3e-127 460.3 349 67.6
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 2.2e-127 459.5 320 70.6
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 7.1e-126 454.5 347 66.0
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 5.6e-123 444.9 335 66.9
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 5.2e-121 438.3 331 64.7
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 2.2e-119 433.0 250 84.0
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 7.8e-117 424.5 247 82.6
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 5.1e-116 421.8 246 83.7
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 2.4e-113 412.9 242 81.4
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 4.0e-113 412.1 247 78.9
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.5e-107 393.7 318 64.2
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.9e-107 393.3 315 65.4
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 3.3e-107 392.5 318 65.4
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 2.8e-106 389.4 243 76.1
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 2.4e-105 386.3 329 62.0
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 2.4e-105 386.3 368 58.7
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 2.6e-96 356.3 314 59.2
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 9.6e-91 337.8 232 74.6
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 5.9e-88 328.6 195 80.0
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 1.4e-73 280.8 215 69.8
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 3.9e-68 262.7 319 45.1
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 2.0e-67 260.4 168 72.0
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 4.4e-67 259.2 263 49.4
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 2.5e-62 243.4 357 43.1
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 1.8e-60 237.3 135 81.5
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 2.8e-58 229.9 138 80.4
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 2.4e-57 226.9 172 62.8
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 3.6e-53 213.0 128 77.3
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.0e-40 170.6 130 66.2
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 5.9e-40 169.1 130 65.4
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 4.3e-38 162.9 120 67.5
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.8e-37 160.2 132 62.9
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.8e-36 157.5 123 64.2
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.8e-36 157.5 123 64.2
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 8.9e-36 155.2 123 63.4
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 2.6e-35 153.7 100 78.0
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 7.5e-35 152.1 162 50.6
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 2.3e-31 140.6 199 46.7
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 3.9e-31 139.8 106 65.1
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 1.4e-25 121.3 73 82.2
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 1.6e-24 117.9 93 63.4
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 4.3e-22 109.8 80 66.2
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 2.1e-21 107.5 197 41.6
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 2.3e-20 104.0 76 67.1
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 5.2e-20 102.8 65 81.5
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.2e-19 101.7 61 82.0
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 2.6e-19 100.5 66 77.3
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.9e-17 94.4 87 60.9
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 4.1e-17 93.2 67 70.1
PRCOL_00002191 Prasinoderma coloniale HOM05D005162 ORTHO05D333607 2.5e-14 84.0 213 29.6
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 2.0e-11 74.3 52 67.3
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 2.6e-11 73.9 51 72.5
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 3.4e-11 73.6 50 74.0
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 9.2e-09 65.5 54 64.8
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 4.6e-08 63.2 60 58.3
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 9.6e-06 55.5 164 28.0


User provided reference genes

Program Settings