Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 5.8e-236 820.5 406 100.0
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 1.2e-148 530.4 305 87.9
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 2.9e-134 482.6 306 79.7
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 2.7e-124 449.5 306 74.5
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 7.1e-117 424.9 306 71.9
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 3.5e-116 422.5 301 72.1
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 8.7e-115 417.9 308 70.5
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 8.7e-115 417.9 306 72.2
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 1.1e-114 417.5 306 72.2
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 4.8e-97 359.0 304 64.8
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 1.5e-85 320.9 310 55.5
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 8.9e-51 205.3 344 41.3
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 9.8e-50 201.8 312 42.6
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 2.2e-49 200.7 332 41.3
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 1.6e-47 194.5 333 40.8
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 6.0e-47 192.6 335 41.2
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 7.8e-47 192.2 333 40.5
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.0e-46 191.8 329 40.7
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.7e-46 191.0 333 41.4
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 5.1e-46 189.5 333 41.1
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 6.6e-46 189.1 333 41.4
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 9.5e-45 185.3 323 43.0
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 9.5e-45 185.3 338 38.8
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 8.9e-43 178.7 340 36.5
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 1.5e-42 177.9 337 36.8
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 2.6e-42 177.2 335 37.3
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 5.8e-42 176.0 352 35.8
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 7.5e-42 175.6 320 40.0
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 1.7e-41 174.5 322 41.3
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 2.2e-41 174.1 333 35.4
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.4e-40 171.4 307 41.4
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 1.4e-40 171.4 307 41.4
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.9e-40 171.0 322 40.1
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 3.2e-40 170.2 330 35.2
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 4.1e-40 169.9 335 35.2
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 5.4e-40 169.5 325 37.8
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 7.1e-40 169.1 335 37.6
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 7.1e-40 169.1 322 36.3
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.2e-39 168.3 335 37.9
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 1.6e-39 167.9 313 39.3
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 2.1e-39 167.5 335 36.4
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 2.7e-39 167.2 287 39.7
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 2.7e-39 167.2 342 35.7
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 2.7e-39 167.2 303 39.9
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 3.5e-39 166.8 331 36.0
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 6.0e-39 166.0 331 36.6
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 7.8e-39 165.6 269 41.3
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.0e-38 165.2 322 36.6
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.0e-38 165.2 326 37.7
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 3.0e-38 163.7 320 37.8
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 1.9e-37 161.0 350 33.4
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 1.9e-37 161.0 323 34.4
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.9e-37 161.0 343 36.4
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 1.9e-37 161.0 342 33.6
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 5.6e-37 159.5 353 33.1
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.6e-36 157.9 314 33.8
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 4.7e-36 156.4 328 36.3
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 4.7e-36 156.4 339 37.2
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 1.1e-35 155.2 328 37.2
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 1.1e-35 155.2 269 40.1
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 1.8e-35 154.5 327 36.1
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.8e-35 154.5 329 35.0
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.8e-35 154.5 327 36.1
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.4e-35 154.1 329 35.0
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 3.1e-35 153.7 314 33.4
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 4.0e-35 153.3 337 34.7
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 5.2e-35 152.9 329 35.0
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 6.8e-35 152.5 321 35.5
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 6.8e-35 152.5 327 33.3
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 8.9e-35 152.1 225 42.7
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 1.2e-34 151.8 336 34.2
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.5e-34 151.4 335 36.1
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.0e-34 151.0 225 42.2
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 2.0e-34 151.0 325 38.5
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 2.0e-34 151.0 300 36.7
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 3.4e-34 150.2 322 35.1
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 4.4e-34 149.8 336 35.4
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 4.4e-34 149.8 238 40.8
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 5.8e-34 149.4 234 38.0
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 5.8e-34 149.4 321 35.5
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 7.6e-34 149.1 225 41.8
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 9.9e-34 148.7 261 39.5
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 9.9e-34 148.7 336 35.7
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 9.9e-34 148.7 327 35.5
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 1.7e-33 147.9 282 39.4
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 2.9e-33 147.1 320 34.7
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 1.4e-32 144.8 336 33.9
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 1.4e-32 144.8 334 32.9
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.4e-32 144.1 327 35.5
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 3.2e-32 143.7 324 36.4
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 5.4e-32 142.9 335 32.8
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 9.2e-32 142.1 321 35.5
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 9.2e-32 142.1 256 39.1
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 9.2e-32 142.1 287 38.7
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 1.2e-31 141.7 321 34.9
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 3.5e-31 140.2 326 35.3
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 7.8e-31 139.0 310 32.9
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 1.0e-30 138.7 310 33.5
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 1.3e-30 138.3 326 31.9
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 8.7e-30 135.6 309 34.0
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 4.3e-29 133.3 230 38.7
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 7.3e-29 132.5 229 36.7
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 9.6e-29 132.1 223 36.8
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 1.3e-28 131.7 213 42.7
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 2.8e-28 130.6 285 34.4
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 3.6e-28 130.2 399 27.6
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 4.8e-28 129.8 326 33.1
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 4.0e-27 126.7 287 34.5
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 5.3e-27 126.3 240 35.8
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 9.9e-26 122.1 212 38.7
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.3e-25 121.7 346 29.8
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 1.7e-25 121.3 249 37.8
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 3.8e-25 120.2 255 35.3
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 3.8e-25 120.2 255 35.3
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 3.2e-24 117.1 329 30.4
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 5.4e-24 116.3 228 34.2
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 2.7e-23 114.0 212 36.3
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 2.7e-23 114.0 219 35.2
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 4.6e-23 113.2 328 29.9
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 4.6e-23 113.2 286 31.5
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 4.6e-23 113.2 310 28.1
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.0e-22 112.1 254 33.5
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.7e-22 111.3 213 33.3
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.7e-22 111.3 310 28.4
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 2.3e-22 110.9 326 32.2
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 8.1e-20 102.4 215 32.1
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.8e-19 101.3 186 38.2
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.1e-19 100.5 253 30.8
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 6.9e-19 99.4 251 32.7
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 2.6e-18 97.4 305 28.5
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 5.8e-18 96.3 168 38.7
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.9e-17 94.0 225 33.8
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 6.4e-17 92.8 249 31.3
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 4.6e-15 86.7 255 32.2
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 6.0e-15 86.3 128 46.1
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 7.4e-13 79.3 263 30.4
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 5.3e-11 73.2 253 27.7
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 6.9e-11 72.8 114 40.4
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 1.5e-10 71.6 142 32.4
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.4e-08 65.1 136 30.9
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 2.7e-07 60.8 132 31.1


User provided reference genes

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