Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G05018 Arabidopsis thaliana HOM05D006486 ORTHO05D007888 2.7e-132 475.3 236 100.0
AL6G48620 Arabidopsis lyrata HOM05D006486 ORTHO05D007888 1.7e-49 200.3 158 72.8
Carub.0007s1992 Capsella rubella HOM05D006486 ORTHO05D007888 4.9e-25 119.0 168 48.8
AT4G21500 Arabidopsis thaliana HOM05D006486 ORTHO05D007888 4.1e-24 115.9 145 51.7
THA.LOC104812719 Tarenaya hassleriana HOM05D006486 ORTHO05D007888 9.2e-24 114.8 228 36.8
AL7G32570 Arabidopsis lyrata HOM05D006486 ORTHO05D007888 1.6e-23 114.0 137 51.1
A01p12810 Brassica napus HOM05D006486 ORTHO05D007888 6.2e-20 102.1 156 44.2
BolC1t01497H Brassica oleracea HOM05D006486 ORTHO05D007888 6.2e-20 102.1 155 42.6
Sp7g19620 Schrenkiella parvula HOM05D006486 ORTHO05D007888 8.1e-20 101.7 170 44.7
BraA01t01225Z Brassica rapa HOM05D006486 ORTHO05D007888 1.1e-19 101.3 124 50.0
CARHR228160 Cardamine hirsuta HOM05D006486 ORTHO05D007888 1.4e-19 100.9 137 48.9
BcaNung02794 Brassica carinata HOM05D006486 ORTHO05D007888 5.2e-19 99.0 175 40.0
Aa31LG6G3500 Aethionema arabicum HOM05D006486 ORTHO05D007888 1.2e-18 97.8 174 41.4
C01p15430 Brassica napus HOM05D006486 ORTHO05D007888 2.0e-18 97.1 155 41.3
Thhalv10026096m.g Eutrema salsugineum HOM05D006486 ORTHO05D007888 6.4e-17 92.0 167 43.1
GSVIVG01003184001 Vitis vinifera HOM05D006486 ORTHO05D007888 2.3e-14 83.6 206 34.0
CSS0009661 Camellia sinensis var. sinensis HOM05D006486 ORTHO05D007888 4.3e-13 79.3 203 32.5
Duzib235G1194 Durio zibethinus HOM05D006486 ORTHO05D007888 1.2e-12 77.8 204 32.8
Manes.17G039100 Manihot esculenta HOM05D006486 ORTHO05D007888 1.4e-11 74.3 213 31.0
COL.COLO4_31586 Corchorus olitorius HOM05D006486 ORTHO05D007888 1.8e-11 73.9 157 40.1
TWI63G1620 Tripterygium wilfordii HOM05D006486 ORTHO05D007888 1.8e-11 73.9 174 35.1
Gohir.A10G021000 Gossypium hirsutum HOM05D006486 ORTHO05D007888 4.0e-11 72.8 221 33.5
PGR004G0715 Punica granatum HOM05D006486 ORTHO05D007888 4.0e-11 72.8 150 38.7
Gohir.D10G021800 Gossypium hirsutum HOM05D006486 ORTHO05D007888 5.2e-11 72.4 221 33.9
TAR629G2100 Trochodendron aralioides HOM05D006486 ORTHO05D007888 5.2e-11 72.4 220 32.3
Gorai.011G022900 Gossypium raimondii HOM05D006486 ORTHO05D007888 6.8e-11 72.0 221 33.9
ClCG01G022550 Citrullus lanatus HOM05D006486 ORTHO05D007888 2.0e-10 70.5 203 28.6
Lalb_Chr20g0122301 Lupinus albus HOM05D006486 ORTHO05D007888 2.0e-10 70.5 186 29.6
Manes.16G020500 Manihot esculenta HOM05D006486 ORTHO05D007888 2.0e-10 70.5 170 31.2
Thecc.06G199700 Theobroma cacao HOM05D006486 ORTHO05D007888 2.6e-10 70.1 205 33.7
TAR624G1400 Trochodendron aralioides HOM05D006486 ORTHO05D007888 2.6e-10 70.1 199 31.2
Sabra11G0029300 Salix brachista HOM05D006486 ORTHO05D007888 5.8e-10 68.9 241 28.6
Cc02_g12410 Coffea canephora HOM05D006486 ORTHO05D007888 9.9e-10 68.2 172 32.0
Sabra04G0019900 Salix brachista HOM05D006486 ORTHO05D007888 9.9e-10 68.2 167 33.5
PSO210G7027 Papaver somniferum HOM05D006486 ORTHO05D007888 1.3e-09 67.8 140 36.4
PSO832G0007 Papaver somniferum HOM05D006486 ORTHO05D007888 2.9e-09 66.6 140 36.4
QL04p018235 Quercus lobata HOM05D006486 ORTHO05D007888 4.9e-09 65.9 187 31.6
RcHm_v2.0_Chr5g0006301 Rosa chinensis HOM05D006486 ORTHO05D007888 4.9e-09 65.9 241 27.0
Glyma.08G059200 Glycine max HOM05D006486 ORTHO05D007888 6.4e-09 65.5 189 31.2
Ca_00252_v3 Cicer arietinum L. HOM05D006486 ORTHO05D007888 8.4e-09 65.1 190 29.5
arahy.Tifrunner.gnm1.ann1.4FF3SU Arachis hypogaea HOM05D006486 ORTHO05D007888 1.4e-08 64.3 179 30.7
CsaV3_6G049740 Cucumis sativus L. HOM05D006486 ORTHO05D007888 1.4e-08 64.3 215 27.0
Gohir.D06G211933 Gossypium hirsutum HOM05D006486 ORTHO05D007888 1.4e-08 64.3 198 33.3
Gorai.010G254200 Gossypium raimondii HOM05D006486 ORTHO05D007888 1.4e-08 64.3 193 33.7
Oeu014709.1 Olea europaea HOM05D006486 ORTHO05D007888 1.4e-08 64.3 232 28.9
Potri.011G042600 Populus trichocarpa HOM05D006486 ORTHO05D007888 1.4e-08 64.3 182 30.2
arahy.Tifrunner.gnm1.ann1.3M60GY Arachis hypogaea HOM05D006486 ORTHO05D007888 1.9e-08 63.9 179 31.8
Medtr2g011760 Medicago truncatula HOM05D006486 ORTHO05D007888 1.9e-08 63.9 184 29.3
Potri.004G034200 Populus trichocarpa HOM05D006486 ORTHO05D007888 1.9e-08 63.9 190 31.1
Prupe.4G037000 Prunus persica HOM05D006486 ORTHO05D007888 3.2e-08 63.2 260 27.3
Cpa.g.sc27.128 Carica papaya HOM05D006486 ORTHO05D007888 7.1e-08 62.0 188 31.9
Migut.M01215 Erythranthe guttata HOM05D006486 ORTHO05D007888 7.1e-08 62.0 182 30.8
MSTRG.15936 Avicennia marina HOM05D006486 ORTHO05D007888 1.2e-07 61.2 209 26.8
Sed0019218 Sechium edule HOM05D006486 ORTHO05D007888 1.2e-07 61.2 229 28.8
Haze_06576 Corylus avellana HOM05D006486 ORTHO05D007888 2.7e-07 60.1 245 25.3
Psat1g208760 Pisum sativum HOM05D006486 ORTHO05D007888 2.7e-07 60.1 185 30.3
TPR.G25690 Trifolium pratense HOM05D006486 ORTHO05D007888 2.7e-07 60.1 171 29.8
Haze_06575 Corylus avellana HOM05D006486 ORTHO05D007888 3.5e-07 59.7 245 26.1
Nn1g03891 Nelumbo nucifera HOM05D006486 ORTHO05D007888 3.5e-07 59.7 165 32.7
Nn1g06762 Nelumbo nucifera HOM05D006486 ORTHO05D007888 3.5e-07 59.7 218 29.8
Aqoxy1G03879 Aquilegia oxysepala HOM05D006486 ORTHO05D007888 4.6e-07 59.3 170 31.8
MD10G1303500 Malus domestica HOM05D006486 ORTHO05D007888 4.6e-07 59.3 185 28.1
Phvul.006G192300 Phaseolus vulgaris HOM05D006486 ORTHO05D007888 4.6e-07 59.3 232 27.2
FAN16G2112 Fragaria x ananassa HOM05D006486 ORTHO05D007888 6.0e-07 58.9 270 25.9
Glyma.15G067400 Glycine max HOM05D006486 ORTHO05D007888 7.8e-07 58.5 191 29.8
SGA_v2.0_scaffold7G03946 Striga asiatica HOM05D006486 ORTHO05D007888 1.3e-06 57.8 232 28.4
Cfa000350 Carpinus fangiana HOM05D006486 ORTHO05D007888 5.1e-06 55.8 250 24.0
MD05G1325600 Malus domestica HOM05D006486 ORTHO05D007888 5.1e-06 55.8 185 28.6
CiPaw.09G157800 Carya illinoinensis HOM05D006486 ORTHO05D007888 6.6e-06 55.5 229 27.9
VMungo0540G0810 Vigna mungo HOM05D006486 ORTHO05D007888 8.6e-06 55.1 234 26.5


User provided reference genes

Program Settings