Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 3.3e-69 265.0 140 100.0
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 4.0e-67 258.1 140 97.1
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 2.6e-66 255.4 140 96.4
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 8.3e-65 250.4 140 94.3
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 9.2e-64 246.9 141 93.6
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 4.0e-59 231.5 149 86.6
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.5e-58 229.6 151 84.8
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.5e-58 229.6 151 84.8
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.6e-58 228.8 140 86.4
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 1.4e-56 223.0 140 85.7
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 3.2e-56 221.9 152 82.2
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 7.1e-56 220.7 155 80.6
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 7.1e-56 220.7 155 80.6
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 9.2e-56 220.3 140 84.3
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 9.2e-56 220.3 140 82.1
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.6e-55 219.5 140 82.9
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 4.6e-55 218.0 140 82.1
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 6.0e-55 217.6 140 81.4
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.0e-54 216.9 140 83.6
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 2.3e-54 215.7 140 82.9
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.0e-54 215.3 140 82.9
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 3.0e-54 215.3 140 80.7
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.9e-54 214.9 140 82.9
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 5.1e-54 214.5 140 82.9
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 6.6e-54 214.2 140 82.1
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 8.6e-54 213.8 140 82.1
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.1e-53 213.4 140 82.9
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 1.5e-53 213.0 140 80.7
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.9e-53 212.6 140 82.1
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.9e-53 212.6 147 80.3
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.9e-53 212.6 140 81.4
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 3.3e-53 211.8 140 81.4
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 3.3e-53 211.8 140 79.3
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 5.6e-53 211.1 140 81.4
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 5.6e-53 211.1 140 81.4
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 7.3e-53 210.7 140 81.4
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 7.3e-53 210.7 140 80.7
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 7.3e-53 210.7 140 80.7
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 9.5e-53 210.3 143 81.1
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 1.2e-52 209.9 140 80.7
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.2e-52 209.9 140 80.0
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.8e-52 208.8 140 81.4
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 3.6e-52 208.4 140 80.0
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 3.6e-52 208.4 140 78.6
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 4.7e-52 208.0 140 80.0
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 8.1e-52 207.2 140 80.0
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 1.1e-51 206.8 140 78.6
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 1.1e-51 206.8 141 78.7
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.1e-51 206.8 140 79.3
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.4e-51 206.5 140 78.6
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 1.4e-51 206.5 140 79.3
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 3.1e-51 205.3 141 78.7
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 3.1e-51 205.3 140 79.3
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 3.1e-51 205.3 140 78.6
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 3.1e-51 205.3 143 76.9
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 5.2e-51 204.5 140 79.3
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 6.8e-51 204.1 139 77.7
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 1.2e-50 203.4 140 78.6
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.2e-50 203.4 140 79.3
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.5e-50 203.0 140 77.9
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 2.0e-50 202.6 141 77.3
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 2.6e-50 202.2 140 77.1
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 2.6e-50 202.2 164 72.6
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 2.6e-50 202.2 139 77.0
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.6e-50 202.2 140 77.1
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 4.4e-50 201.4 136 80.1
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 4.4e-50 201.4 140 77.9
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.8e-50 201.1 140 77.1
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 9.9e-50 200.3 141 75.2
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 9.9e-50 200.3 140 77.1
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 1.7e-49 199.5 140 76.4
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 2.2e-49 199.1 143 74.8
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 2.9e-49 198.7 140 75.7
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 2.9e-49 198.7 142 76.1
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 2.9e-49 198.7 143 74.8
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 4.9e-49 198.0 140 75.7
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.4e-49 197.6 144 75.0
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 8.4e-49 197.2 139 76.3
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-48 196.8 140 75.7
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-48 196.8 140 75.7
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.9e-48 196.1 139 76.3
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.4e-48 195.7 140 75.7
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 3.2e-48 195.3 140 74.3
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.2e-48 195.3 144 73.6
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 5.4e-48 194.5 139 75.5
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 5.4e-48 194.5 140 75.7
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 9.2e-48 193.7 139 74.1
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 9.2e-48 193.7 146 73.3
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 1.2e-47 193.4 160 68.8
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 2.1e-47 192.6 140 75.0
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.7e-47 192.2 140 73.6
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 3.5e-47 191.8 136 77.9
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 3.5e-47 191.8 148 73.0
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.0e-46 190.3 148 71.6
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 1.0e-46 190.3 139 74.1
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.7e-46 189.5 140 74.3
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.0e-46 188.7 140 75.0
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 6.6e-46 187.6 139 73.4
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.1e-45 186.8 140 70.7
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 3.3e-45 185.3 154 68.2
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 7.3e-45 184.1 140 72.9
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 6.2e-44 181.0 176 59.7
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 8.1e-44 180.6 141 70.9
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-43 180.3 140 70.0
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 4.0e-43 178.3 174 60.3
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 5.2e-43 177.9 168 60.7
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 2.2e-41 172.6 140 66.4
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 8.4e-41 170.6 138 68.8
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.1e-40 170.2 140 65.7
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 1.6e-39 166.4 136 69.9
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 1.6e-39 166.4 114 79.8
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 1.6e-39 166.4 114 80.7
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 4.6e-39 164.9 136 70.6
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.9e-37 159.5 116 74.1
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 4.3e-37 158.3 138 68.1
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 9.6e-37 157.1 140 59.3
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.6e-36 156.4 114 75.4
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 3.6e-36 155.2 140 60.0
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 3.6e-36 155.2 170 52.9
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.4e-35 153.3 117 73.5
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 2.4e-35 152.5 119 70.6
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 4.0e-35 151.8 110 75.5
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 4.5e-34 148.3 127 69.3
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 9.9e-34 147.1 138 58.7
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 1.9e-32 142.9 98 75.5
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 6.0e-31 137.9 114 67.5
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 2.3e-30 136.0 158 52.5
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 3.0e-30 135.6 131 61.1
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 8.7e-30 134.0 116 66.4
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 1.9e-29 132.9 164 50.0
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 8.1e-28 127.5 80 86.2
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.8e-27 126.3 80 85.0
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.4e-27 125.9 79 87.3
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.5e-26 123.2 120 59.2
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.0e-26 122.9 76 88.2
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 2.6e-26 122.5 139 56.1
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.6e-26 122.5 80 82.5
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.8e-26 121.3 80 81.2
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 1.9e-24 116.3 137 50.4
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 4.6e-23 111.7 69 82.6
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 1.8e-22 109.8 69 84.1
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 5.1e-22 108.2 133 51.1
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.9e-21 106.3 86 67.4
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 9.6e-21 104.0 86 66.3
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.3e-17 93.6 71 71.8
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 2.5e-16 89.4 86 61.6
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 2.5e-16 89.4 86 61.6
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 4.2e-16 88.6 69 71.0
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 7.1e-16 87.8 71 67.6
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.6e-15 85.1 59 74.6
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 6.0e-15 84.7 104 51.0
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.1e-13 80.5 57 75.4
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 1.1e-13 80.5 77 61.0
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 2.8e-12 75.9 138 37.0
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 3.1e-11 72.4 97 51.5
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 3.1e-11 72.4 97 51.5
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 7.6e-10 67.8 41 78.0
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 1.0e-09 67.4 50 66.0
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 1.7e-09 66.6 50 66.0
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 2.2e-09 66.2 47 70.2
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 3.2e-08 62.4 37 83.8
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 3.2e-08 62.4 37 83.8
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 1.8e-06 56.6 44 68.2


User provided reference genes

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