Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.6e-141 506.1 262 100.0
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.5e-46 190.7 164 63.4
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 5.6e-46 188.7 164 63.4
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.6e-45 187.2 164 61.6
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 4.7e-45 185.7 164 59.8
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 9.8e-43 177.9 164 57.3
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 3.5e-40 169.5 164 56.7
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 3.5e-40 169.5 164 56.7
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 3.5e-40 169.5 164 56.7
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 1.0e-39 167.9 155 55.5
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 1.3e-39 167.5 164 56.1
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 1.3e-39 167.5 164 56.1
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 3.0e-39 166.4 174 52.9
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 3.9e-39 166.0 164 51.8
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 3.9e-39 166.0 164 53.7
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 3.9e-39 166.0 174 52.9
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 5.0e-39 165.6 164 57.3
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.0e-39 165.6 164 53.0
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 1.1e-38 164.5 174 52.9
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.5e-38 164.1 174 51.1
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 1.9e-38 163.7 122 64.8
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 2.5e-38 163.3 162 53.1
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 2.5e-38 163.3 174 50.0
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.3e-38 162.9 164 52.4
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 3.3e-38 162.9 164 52.4
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 3.3e-38 162.9 174 50.0
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 4.3e-38 162.5 164 51.8
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 4.3e-38 162.5 164 51.8
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.3e-38 162.5 229 45.4
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.6e-38 162.2 164 51.8
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 7.3e-38 161.8 164 53.0
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 7.3e-38 161.8 170 47.6
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 7.3e-38 161.8 164 51.2
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 9.5e-38 161.4 188 50.5
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 9.5e-38 161.4 164 52.4
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 1.2e-37 161.0 167 53.9
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 1.2e-37 161.0 164 51.8
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.2e-37 161.0 165 54.5
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.6e-37 160.6 164 51.2
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 1.6e-37 160.6 164 50.6
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 1.6e-37 160.6 164 53.7
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.6e-37 160.6 164 51.8
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 2.1e-37 160.2 164 52.4
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 2.1e-37 160.2 164 52.4
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.1e-37 160.2 224 46.0
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 2.1e-37 160.2 164 51.8
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 3.6e-37 159.5 164 54.3
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 3.6e-37 159.5 186 47.8
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 4.7e-37 159.1 213 43.7
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 6.2e-37 158.7 163 54.0
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 6.2e-37 158.7 164 53.0
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 6.2e-37 158.7 168 48.8
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 6.2e-37 158.7 165 53.3
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 8.0e-37 158.3 163 54.0
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 8.0e-37 158.3 194 46.4
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 8.0e-37 158.3 164 49.4
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 8.0e-37 158.3 174 49.4
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.1e-36 157.9 155 55.5
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.4e-36 157.5 164 53.7
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.8e-36 157.1 164 51.8
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.8e-36 157.1 164 51.2
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 2.3e-36 156.8 164 51.2
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 2.3e-36 156.8 214 44.4
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 3.1e-36 156.4 154 54.5
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.1e-36 156.4 164 51.8
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 3.1e-36 156.4 164 52.4
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.2e-36 155.6 164 51.2
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.2e-36 155.6 164 51.8
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.2e-36 155.6 164 51.2
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 5.2e-36 155.6 155 49.0
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 5.2e-36 155.6 162 51.2
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 6.8e-36 155.2 164 51.8
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 6.8e-36 155.2 165 52.7
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 6.8e-36 155.2 122 61.5
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 1.2e-35 154.5 122 62.3
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.5e-35 154.1 164 48.8
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.5e-35 154.1 174 48.3
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 2.0e-35 153.7 165 52.1
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 2.6e-35 153.3 167 49.7
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 5.8e-35 152.1 164 50.0
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.3e-34 151.0 155 52.9
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 2.2e-34 150.2 164 50.0
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 2.2e-34 150.2 165 51.5
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 2.2e-34 150.2 155 48.4
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 2.2e-34 150.2 168 50.6
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 2.9e-34 149.8 161 50.3
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 3.7e-34 149.4 165 49.7
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 4.9e-34 149.1 164 48.8
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 8.3e-34 148.3 195 45.6
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.1e-33 147.9 165 51.5
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.4e-33 147.5 165 51.5
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 2.4e-33 146.7 158 50.6
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.2e-33 146.4 146 54.8
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 4.1e-33 146.0 169 54.4
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 7.1e-33 145.2 164 50.6
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 1.6e-32 144.1 155 45.8
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 1.6e-32 144.1 231 39.8
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.6e-32 144.1 158 49.4
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 2.7e-32 143.3 190 44.7
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.7e-31 140.6 163 47.9
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 3.9e-31 139.4 164 48.2
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 3.9e-31 139.4 164 48.2
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 6.6e-31 138.7 158 49.4
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.5e-30 136.7 203 43.3
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 2.5e-30 136.7 164 45.1
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 1.2e-29 134.4 246 38.2
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.6e-29 134.0 107 65.4
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.6e-29 132.9 156 50.6
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 3.6e-29 132.9 155 43.9
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 6.2e-29 132.1 247 38.5
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 2.6e-27 126.7 103 59.2
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 3.4e-27 126.3 197 36.5
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 4.4e-27 125.9 139 48.9
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 9.9e-27 124.8 97 64.9
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 2.2e-26 123.6 97 61.9
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 3.7e-26 122.9 156 41.7
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 9.2e-25 118.2 145 43.4
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.8e-20 104.0 156 39.7
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.8e-20 104.0 156 39.7
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 8.4e-18 95.1 159 33.3
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 1.1e-17 94.7 116 46.6
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 2.4e-17 93.6 128 39.1
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.3e-15 87.8 99 49.5
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 6.6e-15 85.5 159 35.8
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 2.6e-11 73.6 122 36.1
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 3.4e-11 73.2 115 33.0
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 2.7e-08 63.5 44 72.7
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 1.3e-07 61.2 41 78.0


User provided reference genes

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