Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G04330 Arabidopsis thaliana HOM05D007052 ORTHO05D008871 8.7e-96 353.6 175 100.0
CARHR253150 Cardamine hirsuta HOM05D007052 ORTHO05D008871 9.7e-87 323.6 176 91.5
Carub.0006s3216 Capsella rubella HOM05D007052 ORTHO05D008871 1.3e-86 323.2 174 92.5
Sp6g04520 Schrenkiella parvula HOM05D007052 ORTHO05D008871 1.1e-82 310.1 174 88.5
A09p26390 Brassica napus HOM05D007052 ORTHO05D008871 2.1e-81 305.8 175 86.9
BraA09t38213Z Brassica rapa HOM05D007052 ORTHO05D008871 2.1e-81 305.8 175 86.9
C09p33580 Brassica napus HOM05D007052 ORTHO05D008871 6.1e-81 304.3 175 86.3
BolC9t56192H Brassica oleracea HOM05D007052 ORTHO05D008871 6.1e-81 304.3 175 86.3
BcaB01g01799 Brassica carinata HOM05D007052 ORTHO05D008871 1.8e-80 302.8 175 86.9
BcaC04g21282 Brassica carinata HOM05D007052 ORTHO05D008871 1.8e-80 302.8 175 85.7
Aa31LG9G9870 Aethionema arabicum HOM05D007052 ORTHO05D008871 1.3e-70 270.0 172 80.8
AL6G47870 Arabidopsis lyrata HOM05D007052 ORTHO05D008871 1.9e-66 256.1 129 97.7
THA.LOC104812978 Tarenaya hassleriana HOM05D007052 ORTHO05D008871 1.8e-61 239.6 176 70.5
Lj1A1235T90 Lonicera japonica HOM05D007052 ORTHO05D008871 2.5e-58 229.2 170 70.6
TAR627G0466 Trochodendron aralioides HOM05D007052 ORTHO05D008871 7.2e-58 227.6 167 70.7
TWI38G1879 Tripterygium wilfordii HOM05D007052 ORTHO05D008871 2.3e-56 222.6 166 68.1
PGR042G3505 Punica granatum HOM05D007052 ORTHO05D008871 5.2e-56 221.5 142 76.8
Aqoxy1G03011 Aquilegia oxysepala HOM05D007052 ORTHO05D008871 1.2e-55 220.3 169 67.5
VMungo0540G2459 Vigna mungo HOM05D007052 ORTHO05D008871 2.0e-55 219.5 146 74.0
Thhalv10029002m.g Eutrema salsugineum HOM05D007052 ORTHO05D008871 1.3e-54 216.9 122 89.3
Manes.17G028000 Manihot esculenta HOM05D007052 ORTHO05D008871 1.3e-54 216.9 173 62.4
Glyma.09G007000 Glycine max HOM05D007052 ORTHO05D008871 2.2e-54 216.1 147 72.1
Cfa000169 Carpinus fangiana HOM05D007052 ORTHO05D008871 6.3e-54 214.5 168 65.5
Ciclev10016958m.g Citrus clementina HOM05D007052 ORTHO05D008871 1.1e-53 213.8 169 66.3
Glyma.15G111400 Glycine max HOM05D007052 ORTHO05D008871 1.1e-53 213.8 147 71.4
Lsat_1_v5_gn_1_129560 Lactuca sativa HOM05D007052 ORTHO05D008871 1.1e-53 213.8 165 64.2
Cc09_g01290 Coffea canephora HOM05D007052 ORTHO05D008871 1.4e-53 213.4 138 73.9
Haze_06850 Corylus avellana HOM05D007052 ORTHO05D008871 2.4e-53 212.6 168 65.5
Gohir.A10G011300 Gossypium hirsutum HOM05D007052 ORTHO05D008871 2.4e-53 212.6 134 77.6
Gorai.011G012000 Gossypium raimondii HOM05D007052 ORTHO05D008871 2.4e-53 212.6 134 77.6
Medtr2g024300 Medicago truncatula HOM05D007052 ORTHO05D008871 2.4e-53 212.6 174 63.8
GSVIVG01012660001 Vitis vinifera HOM05D007052 ORTHO05D008871 3.1e-53 212.2 145 72.4
Duzib235G0934 Durio zibethinus HOM05D007052 ORTHO05D008871 1.2e-52 210.3 140 72.9
MD10G1325900 Malus domestica HOM05D007052 ORTHO05D008871 1.2e-52 210.3 180 65.0
Phvul.006G146300 Phaseolus vulgaris HOM05D007052 ORTHO05D008871 1.2e-52 210.3 163 66.3
Potri.011G010300 Populus trichocarpa HOM05D007052 ORTHO05D008871 1.2e-52 210.3 172 64.0
arahy.Tifrunner.gnm1.ann1.LNF63F Arachis hypogaea HOM05D007052 ORTHO05D008871 1.6e-52 209.9 145 70.3
arahy.Tifrunner.gnm1.ann1.MS5PCD Arachis hypogaea HOM05D007052 ORTHO05D008871 1.6e-52 209.9 145 70.3
Thecc.06G227100 Theobroma cacao HOM05D007052 ORTHO05D008871 1.6e-52 209.9 150 70.0
Ca_00688_v3 Cicer arietinum L. HOM05D007052 ORTHO05D008871 4.5e-52 208.4 174 60.9
Lj6g0012328 Lotus japonicus HOM05D007052 ORTHO05D008871 4.5e-52 208.4 147 68.7
Sed0006602 Sechium edule HOM05D007052 ORTHO05D008871 4.5e-52 208.4 172 62.2
Sc05g0009410 Simmondsia chinensis HOM05D007052 ORTHO05D008871 4.5e-52 208.4 150 68.7
EL10Ac8g20122 Beta vulgaris HOM05D007052 ORTHO05D008871 5.9e-52 208.0 171 62.6
CANSAT56G3240 Cannabis sativa HOM05D007052 ORTHO05D008871 5.9e-52 208.0 149 67.1
MD05G1351600 Malus domestica HOM05D007052 ORTHO05D008871 5.9e-52 208.0 178 64.6
PSO675G2240 Papaver somniferum HOM05D007052 ORTHO05D008871 1.7e-51 206.5 144 69.4
Dinv20100 Davidia involucrata HOM05D007052 ORTHO05D008871 2.2e-51 206.1 126 79.4
Eucgr.E03993 Eucalyptus grandis HOM05D007052 ORTHO05D008871 3.8e-51 205.3 177 63.3
Lalb_Chr18g0056571 Lupinus albus HOM05D007052 ORTHO05D008871 1.9e-50 203.0 180 61.1
SGA_v2.0_scaffold7G03781 Striga asiatica HOM05D007052 ORTHO05D008871 3.2e-50 202.2 135 71.1
ECA248G2484 Erigeron canadensis HOM05D007052 ORTHO05D008871 4.2e-50 201.8 125 77.6
Actinidia11870 Actinidia chinensis HOM05D007052 ORTHO05D008871 1.6e-49 199.9 125 75.2
Sabra11G0007900 Salix brachista HOM05D007052 ORTHO05D008871 1.6e-49 199.9 163 62.0
TPR.G13090 Trifolium pratense HOM05D007052 ORTHO05D008871 1.6e-49 199.9 177 59.9
vmacro15801 Vaccinium macrocarpon HOM05D007052 ORTHO05D008871 1.6e-49 199.9 179 60.9
Gohir.D06G156800 Gossypium hirsutum HOM05D007052 ORTHO05D008871 2.7e-49 199.1 142 71.8
PSO541G4001 Papaver somniferum HOM05D007052 ORTHO05D008871 2.7e-49 199.1 178 61.2
Rhsim02G0105300 Rhododendron simsii HOM05D007052 ORTHO05D008871 6.1e-49 198.0 181 59.1
MELO3C007415.2 Cucumis melo HOM05D007052 ORTHO05D008871 4.0e-48 195.3 167 61.1
Migut.M01374 Erythranthe guttata HOM05D007052 ORTHO05D008871 4.0e-48 195.3 170 62.4
Sopen02g025730 Solanum pennellii HOM05D007052 ORTHO05D008871 4.0e-48 195.3 132 69.7
CSS0050367 Camellia sinensis var. sinensis HOM05D007052 ORTHO05D008871 1.5e-47 193.4 122 77.9
COL.COLO4_31826 Corchorus olitorius HOM05D007052 ORTHO05D008871 3.4e-47 192.2 123 76.4
CDE07G0375 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 9.8e-47 190.7 121 76.0
ATR0624G054 Amborella trichopoda HOM05D007052 ORTHO05D008871 4.9e-46 188.3 134 68.7
Gohir.A06G150600 Gossypium hirsutum HOM05D007052 ORTHO05D008871 4.9e-46 188.3 142 68.3
Solyc02g081060.4 Solanum lycopersicum HOM05D007052 ORTHO05D008871 3.1e-45 185.7 120 73.3
CsaV3_6G048750 Cucumis sativus L. HOM05D007052 ORTHO05D008871 9.1e-45 184.1 114 78.1
ClCG01G021710 Citrullus lanatus HOM05D007052 ORTHO05D008871 1.6e-44 183.3 149 64.4
QL05p072067 Quercus lobata HOM05D007052 ORTHO05D008871 2.0e-44 183.0 229 48.0
Os08g0425200 Oryza sativa ssp. japonica HOM05D007052 ORTHO05D008871 2.7e-44 182.6 128 66.4
HanXRQChr01g0006501 Helianthus annuus HOM05D007052 ORTHO05D008871 7.7e-44 181.0 173 56.6
DCAR_024989 Daucus carota HOM05D007052 ORTHO05D008871 1.3e-43 180.3 121 71.1
CAN.G1014.43 Capsicum annuum HOM05D007052 ORTHO05D008871 2.3e-43 179.5 167 56.3
AUR62012751 Chenopodium quinoa HOM05D007052 ORTHO05D008871 5.0e-43 178.3 172 57.6
Peaxi162Scf00178g00039 Petunia axillaris HOM05D007052 ORTHO05D008871 5.6e-42 174.9 127 66.9
Pp3c25_6660 Physcomitrium patens HOM05D007052 ORTHO05D008871 4.7e-41 171.8 125 64.8
Hund23440 Selenicereus undatus HOM05D007052 ORTHO05D008871 6.1e-41 171.4 121 66.1
PGSC0003DMG400016462 Solanum tuberosum HOM05D007052 ORTHO05D008871 4.0e-40 168.7 115 70.4
Hund21433 Selenicereus undatus HOM05D007052 ORTHO05D008871 1.2e-39 167.2 196 48.0
AagrBONN_evm.TU.Sc2ySwM_117.3173 Anthoceros agrestis HOM05D007052 ORTHO05D008871 4.9e-38 161.8 120 62.5
Ah.09g234570 Amaranthus hybridus HOM05D007052 ORTHO05D008871 4.1e-37 158.7 137 59.9
SMO118G0387 Selaginella moellendorffii HOM05D007052 ORTHO05D008871 2.7e-36 156.0 121 57.9
Nn1g07250 Nelumbo nucifera HOM05D007052 ORTHO05D008871 8.6e-35 151.0 90 78.9
BcaC04g21271 Brassica carinata HOM05D004489 ORTHO05D039740 9.5e-34 147.5 91 81.3
AUR62021907 Chenopodium quinoa HOM05D007052 ORTHO05D008871 5.2e-32 141.7 172 50.0
SalBow8G1921 Salvia bowleyana HOM05D007052 ORTHO05D008871 1.3e-30 137.1 100 67.0
RcHm_v2.0_Chr5g0002341 Rosa chinensis HOM05D007052 ORTHO05D008871 3.7e-30 135.6 136 56.6
CiPaw.09G097200 Carya illinoinensis HOM05D007052 ORTHO05D008871 1.1e-29 134.0 120 60.8
Psat1g177840 Pisum sativum HOM05D007052 ORTHO05D008871 9.2e-29 131.0 123 56.1
Prupe.4G016000 Prunus persica HOM05D007052 ORTHO05D008871 2.0e-28 129.8 128 55.5
Atru.chr10.2273 Acer truncatum HOM05D007052 ORTHO05D008871 3.5e-28 129.0 122 57.4
arahy.Tifrunner.gnm1.ann1.ZUMJ7A Arachis hypogaea HOM05D007052 ORTHO05D008871 4.6e-28 128.6 120 57.5
RcHm_v2.0_Chr7g0236991 Rosa chinensis HOM05D007052 ORTHO05D008871 1.8e-24 116.7 164 45.1
Gorai.010G183200 Gossypium raimondii HOM05D007052 ORTHO05D008871 4.9e-22 108.6 142 47.9
Cre07.g339000 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 4.1e-21 105.5 149 42.3
Zm00001eb179210 Zea mays HOM05D007052 ORTHO05D008871 3.3e-18 95.9 73 63.0
RcHm_v2.0_Chr5g0002331 Rosa chinensis HOM05D007052 ORTHO05D008871 1.4e-16 90.5 50 84.0
Cre01.g030350 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 5.8e-15 85.1 123 42.3
PRCOL_00003846 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 7.6e-15 84.7 139 36.7
FAN21G0414 Fragaria x ananassa HOM05D007052 ORTHO05D008871 1.1e-13 80.9 84 58.3
FAN25G3667 Fragaria x ananassa HOM05D007052 ORTHO05D008871 1.1e-13 80.9 44 81.8
MCO13G382 Micromonas commoda HOM05D007052 ORTHO05D008871 5.4e-13 78.6 152 34.9
MSTRG.7177 Avicennia marina HOM05D007052 ORTHO05D008871 2.1e-09 66.6 48 64.6
PRCOL_00004464 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 2.1e-09 66.6 119 31.9
Nitab4.5_0001409g0190 Nicotiana tabacum HOM05D007052 ORTHO05D008871 2.8e-09 66.2 59 57.6
Nitab4.5_0007209g0010 Nicotiana tabacum HOM05D007052 ORTHO05D008871 1.4e-08 63.9 39 69.2
MCO14G271 Micromonas commoda HOM05D007052 ORTHO05D008871 1.2e-07 60.8 119 37.8
PRCOL_00003373 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 2.6e-07 59.7 127 33.9
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 3.8e-06 55.8 134 31.3
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 3.8e-06 55.8 146 34.9


User provided reference genes

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