Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 1.9e-101 372.5 185 100.0
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 4.4e-90 334.7 185 91.9
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 9.2e-88 327.0 185 89.2
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 2.1e-87 325.9 189 89.4
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 3.5e-87 325.1 190 88.4
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.9e-85 319.3 186 88.7
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 4.3e-85 318.2 185 86.5
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 7.3e-85 317.4 185 85.9
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 3.6e-84 315.1 185 87.0
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 4.7e-84 314.7 185 87.0
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 1.5e-82 309.7 180 86.7
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 4.4e-82 308.1 180 86.1
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 1.2e-79 300.1 175 86.3
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 2.1e-79 299.3 185 80.5
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 3.5e-79 298.5 175 85.7
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 3.1e-75 285.4 185 78.9
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 1.5e-74 283.1 185 75.1
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 3.4e-74 282.0 184 77.7
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 4.5e-74 281.6 185 76.2
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 4.5e-74 281.6 185 76.2
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.7e-73 279.6 187 77.5
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 2.2e-73 279.3 184 77.7
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 2.2e-73 279.3 184 77.7
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 3.8e-73 278.5 185 73.5
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 3.8e-73 278.5 185 74.1
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 3.8e-73 278.5 185 77.3
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 6.4e-73 277.7 185 76.8
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 6.4e-73 277.7 185 76.8
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 8.4e-73 277.3 185 74.6
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 8.4e-73 277.3 183 75.4
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 8.4e-73 277.3 185 77.8
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 1.1e-72 276.9 185 76.2
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 1.4e-72 276.6 183 76.0
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 1.9e-72 276.2 186 76.3
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 2.4e-72 275.8 183 76.5
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 2.4e-72 275.8 185 74.1
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 3.2e-72 275.4 185 75.1
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 3.2e-72 275.4 185 74.6
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.4e-72 274.6 185 77.8
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 5.4e-72 274.6 183 75.4
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 7.1e-72 274.2 167 83.8
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 1.2e-71 273.5 177 78.0
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.2e-71 273.5 185 77.3
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.1e-71 272.7 185 74.1
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 3.5e-71 271.9 185 75.7
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 6.0e-71 271.2 185 74.6
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.0e-71 271.2 185 76.8
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.0e-71 271.2 185 76.8
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 6.0e-71 271.2 185 73.5
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 6.0e-71 271.2 160 84.4
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 1.3e-70 270.0 177 78.0
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 1.3e-70 270.0 158 84.2
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 1.8e-70 269.6 186 74.2
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 1.8e-70 269.6 177 76.8
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 1.8e-70 269.6 162 82.1
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.8e-70 269.6 179 77.7
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.3e-70 269.2 185 74.6
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 2.3e-70 269.2 182 73.1
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.0e-70 268.9 158 84.2
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.0e-70 268.9 158 84.2
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 3.0e-70 268.9 183 76.5
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 3.9e-70 268.5 160 82.5
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 3.9e-70 268.5 160 82.5
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 3.9e-70 268.5 187 73.8
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 5.1e-70 268.1 160 81.9
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 6.7e-70 267.7 158 81.6
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 8.7e-70 267.3 182 73.1
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.5e-69 266.5 185 74.1
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 4.3e-69 265.0 185 74.1
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 4.3e-69 265.0 177 74.6
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 5.6e-69 264.6 158 81.6
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 5.6e-69 264.6 158 82.9
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 9.6e-69 263.8 185 71.9
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.3e-68 263.5 184 71.2
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 1.6e-68 263.1 208 67.3
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.1e-68 262.7 162 77.8
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 2.1e-68 262.7 182 72.0
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 2.8e-68 262.3 161 81.4
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 3.6e-68 261.9 160 80.0
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 3.6e-68 261.9 158 81.0
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 4.8e-68 261.5 160 78.8
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 6.2e-68 261.2 159 79.9
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 8.1e-68 260.8 178 74.7
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 8.1e-68 260.8 183 73.2
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 8.1e-68 260.8 185 69.2
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.8e-67 259.6 185 69.2
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 3.1e-67 258.8 160 78.8
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 6.9e-67 257.7 177 72.9
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 1.2e-66 256.9 184 69.0
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 1.5e-66 256.5 184 69.6
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 2.0e-66 256.1 158 79.1
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 4.5e-66 255.0 170 77.1
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 4.5e-66 255.0 158 77.8
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 5.8e-66 254.6 186 71.0
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 7.6e-66 254.2 185 69.2
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 9.9e-66 253.8 182 68.7
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 1.3e-65 253.4 177 72.9
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 1.9e-64 249.6 150 80.7
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 2.4e-64 249.2 145 84.1
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 9.3e-64 247.3 158 75.9
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.6e-63 246.5 145 82.8
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 2.1e-63 246.1 185 67.6
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 2.1e-63 246.1 145 82.1
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 1.3e-62 243.4 146 81.5
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.3e-62 243.4 144 81.9
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.0e-62 242.3 142 82.4
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 5.1e-62 241.5 175 69.7
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 6.7e-62 241.1 162 73.5
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 1.9e-61 239.6 137 86.1
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.6e-60 236.5 148 79.7
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 2.8e-60 235.7 182 64.8
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 3.7e-60 235.3 140 81.4
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.0e-57 227.3 137 81.8
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 8.4e-57 224.2 181 64.1
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 2.7e-55 219.2 165 66.7
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 4.6e-55 218.4 185 65.4
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 1.1e-51 207.2 135 78.5
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.8e-49 198.7 179 60.9
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 8.5e-49 197.6 177 55.9
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 2.1e-47 193.0 170 59.4
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 2.3e-46 189.5 110 85.5
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 3.9e-46 188.7 160 53.1
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 5.1e-46 188.3 117 76.9
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 3.3e-45 185.7 110 81.8
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 9.7e-45 184.1 117 82.1
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 6.9e-43 177.9 140 67.1
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.5e-40 169.5 133 64.7
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 1.8e-38 163.3 151 53.0
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 3.0e-38 162.5 112 72.3
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.3e-36 157.1 119 67.2
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.4e-35 153.7 83 90.4
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.7e-34 147.9 128 60.2
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.3e-33 147.1 118 65.3
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 2.9e-33 146.0 100 70.0
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.2e-31 140.6 135 54.8
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.1e-31 138.3 83 80.7
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.3e-30 136.3 83 83.1
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 1.5e-29 133.7 89 75.3
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.3e-29 132.5 68 92.6
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 7.0e-27 124.8 193 42.0
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 9.4e-24 114.4 66 83.3
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.0e-22 110.9 154 40.9
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 2.6e-21 106.3 65 78.5
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 3.3e-21 105.9 120 54.2
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 5.7e-21 105.1 58 87.9
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 7.5e-21 104.8 85 67.1
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 6.3e-20 101.7 90 58.9
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 9.1e-19 97.8 52 88.5
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 6.8e-14 81.6 58 63.8
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 6.1e-07 58.5 33 81.8


User provided reference genes

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