Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G03945 Arabidopsis thaliana HOM05D008385 ORTHO05D010806 4.6e-106 387.9 193 100.0
AT1G11593 Arabidopsis thaliana HOM05D008385 ORTHO05D010806 3.5e-90 335.1 189 87.3
AT3G27999 Arabidopsis thaliana HOM05D008385 ORTHO05D010806 2.1e-87 325.9 189 84.7
AL1G58570 Arabidopsis lyrata HOM05D008385 ORTHO05D010806 9.4e-67 257.3 184 68.5
Carub.0001s1211 Capsella rubella HOM05D008385 ORTHO05D010806 5.0e-52 208.4 191 53.9
Carub.0001s1209 Capsella rubella HOM05D008385 ORTHO05D010806 2.5e-51 206.1 190 53.7
C01p18190 Brassica napus HOM05D008385 ORTHO05D010806 2.2e-44 183.0 189 50.3
A01p14670 Brassica napus HOM05D008385 ORTHO05D010806 8.5e-44 181.0 193 50.3
A01p14680 Brassica napus HOM05D008385 ORTHO05D010806 8.5e-44 181.0 189 50.3
BraA08t35266Z Brassica rapa HOM05D008385 ORTHO05D010806 8.5e-44 181.0 189 50.8
C01p18170 Brassica napus HOM05D008385 ORTHO05D010806 1.1e-43 180.6 189 49.7
BolC1t01744H Brassica oleracea HOM05D008385 ORTHO05D010806 1.5e-43 180.3 193 49.7
BraA01t01408Z Brassica rapa HOM05D008385 ORTHO05D010806 2.5e-43 179.5 189 49.7
A08p33500 Brassica napus HOM05D008385 ORTHO05D010806 5.5e-43 178.3 184 51.1
BraA01t01407Z Brassica rapa HOM05D008385 ORTHO05D010806 9.4e-43 177.6 188 49.5
Thhalv10027565m.g Eutrema salsugineum HOM05D008385 ORTHO05D010806 2.7e-42 176.0 186 51.1
C08p14420 Brassica napus HOM05D008385 ORTHO05D010806 4.0e-41 172.2 189 49.7
A08p15720 Brassica napus HOM05D008385 ORTHO05D010806 3.1e-38 162.5 189 44.4
BolC8t49085H Brassica oleracea HOM05D008385 ORTHO05D010806 4.5e-37 158.7 174 49.4
Thhalv10009973m.g Eutrema salsugineum HOM05D008385 ORTHO05D010806 5.9e-37 158.3 188 45.2
BcaC09g50995 Brassica carinata HOM05D008385 ORTHO05D010806 2.3e-36 156.4 160 48.8
Carub.0004s0393 Capsella rubella HOM05D008385 ORTHO05D010806 4.7e-34 148.7 185 45.9
Carub.0006s3013 Capsella rubella HOM05D008385 ORTHO05D010806 4.7e-34 148.7 183 44.8
Thhalv10027044m.g Eutrema salsugineum HOM05D008385 ORTHO05D010806 5.7e-32 141.7 183 46.4
Thhalv10019766m.g Eutrema salsugineum HOM05D008385 ORTHO05D010806 3.2e-30 136.0 176 45.5
Carub.0002s0689 Capsella rubella HOM05D008385 ORTHO05D010806 4.1e-30 135.6 155 46.5
Thhalv10010004m.g Eutrema salsugineum HOM05D008385 ORTHO05D010806 1.2e-29 134.0 188 41.0
AT1G50325 Arabidopsis thaliana HOM05D008385 ORTHO05D010806 3.5e-29 132.5 195 37.4
Thhalv10009564m.g Eutrema salsugineum HOM05D008385 ORTHO05D010806 3.9e-28 129.0 188 38.8
AT1G11362 Arabidopsis thaliana HOM05D008385 ORTHO05D010806 8.6e-28 127.9 185 38.4
Carub.0008s1111 Capsella rubella HOM05D008385 ORTHO05D010806 8.6e-28 127.9 193 41.5
BolC8t49088H Brassica oleracea HOM05D008385 ORTHO05D010806 4.7e-26 122.1 143 40.6
BolC8t49089H Brassica oleracea HOM05D008385 ORTHO05D010806 1.8e-25 120.2 143 39.9
Carub.0001s2729 Capsella rubella HOM05D008385 ORTHO05D010806 6.8e-25 118.2 192 36.5
Carub.0001s1097 Capsella rubella HOM05D008385 ORTHO05D010806 6.4e-23 111.7 175 37.1
Carub.0008s1110 Capsella rubella HOM05D008385 ORTHO05D010806 6.4e-23 111.7 193 38.3
Aa31LG10G5700 Aethionema arabicum HOM05D008385 ORTHO05D001819 1.3e-20 104.0 173 39.3
Carub.0001s2747 Capsella rubella HOM05D008385 ORTHO05D010806 4.0e-17 92.4 137 38.0
Aa31LG10G5710 Aethionema arabicum HOM05D008385 ORTHO05D010806 6.8e-17 91.7 155 38.1
Thhalv10012260m.g Eutrema salsugineum HOM05D008385 ORTHO05D001819 1.2e-16 90.9 179 33.5
Aa31LG10G5720 Aethionema arabicum HOM05D008385 ORTHO05D001819 1.7e-15 87.0 171 36.8
BcaB03g13260 Brassica carinata HOM05D008385 ORTHO05D010806 1.7e-15 87.0 97 48.5
Thhalv10012028m.g Eutrema salsugineum HOM05D008385 ORTHO05D010806 2.9e-15 86.3 159 32.7
AT1G50340 Arabidopsis thaliana HOM05D008385 ORTHO05D010806 4.9e-15 85.5 150 35.3
Aa31LG10G5780 Aethionema arabicum HOM05D000036 ORTHO05D001038 1.9e-14 83.6 137 38.0
THA.LOC104802648 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 2.4e-14 83.2 171 29.8
C03p36070 Brassica napus HOM05D008385 ORTHO05D010806 1.7e-12 77.0 166 31.9
THA.LOC104803096 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 8.6e-12 74.7 178 28.7
A03p29810 Brassica napus HOM05D008385 ORTHO05D001819 1.9e-11 73.6 166 31.9
THA.LOC104808963 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 3.3e-11 72.8 185 30.3
BcaC07g38659 Brassica carinata HOM05D008385 ORTHO05D010806 3.6e-10 69.3 82 46.3
Carub.0007s3098 Capsella rubella HOM05D008385 ORTHO05D010806 4.7e-10 68.9 104 35.6
Aa31LG10G5730 Aethionema arabicum HOM05D008385 ORTHO05D010806 1.5e-08 63.9 135 31.1
THA.LOC104810183 Tarenaya hassleriana HOM05D008385 ORTHO05D001819 5.8e-08 62.0 180 28.3
THA.LOC104810184 Tarenaya hassleriana HOM05D008385 ORTHO05D001819 5.8e-08 62.0 180 28.3
AL1G57970 Arabidopsis lyrata HOM05D008385 ORTHO05D010806 2.2e-07 60.1 107 33.6
Nn3g20356 Nelumbo nucifera HOM05D003146 ORTHO05D001819 3.7e-07 59.3 143 28.7
THA.LOC104802647 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.1e-06 57.8 163 26.4
THA.LOC104825839 Tarenaya hassleriana HOM05D008385 ORTHO05D001819 1.1e-06 57.8 170 28.2
Aa31LG10G5760 Aethionema arabicum HOM05D008385 ORTHO05D010806 1.4e-06 57.4 131 31.3
Nitab4.5_0000035g0080 Nicotiana tabacum HOM05D003146 ORTHO05D001819 1.4e-06 57.4 173 29.5
Nitab4.5_0005440g0020 Nicotiana tabacum HOM05D003146 ORTHO05D001819 1.4e-06 57.4 173 28.9
ClCG09G008860 Citrullus lanatus HOM05D003146 ORTHO05D001819 3.2e-06 56.2 177 26.0


User provided reference genes

Program Settings