Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G03830 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 2.8e-300 1034.6 579 100.0
AT1G51172 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 3.4e-152 542.7 606 52.6
AT1G46696 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 2.5e-123 446.8 608 46.7
AT2G15110 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 1.3e-103 381.3 608 43.1
AL2G23320 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 9.0e-97 358.6 619 38.9
AL1G50390 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 1.7e-92 344.4 631 37.6
Carub.0007s3731 Capsella rubella HOM05D009492 ORTHO05D011693 1.4e-70 271.6 580 35.2
Carub.0007s3611 Capsella rubella HOM05D009492 ORTHO05D011693 3.3e-67 260.4 608 33.2
Carub.0008s0728 Capsella rubella HOM05D009492 ORTHO05D011693 8.5e-63 245.7 610 32.3
Carub.0002s0916 Capsella rubella HOM05D009492 ORTHO05D011693 5.7e-59 233.0 561 32.6
Carub.0004s0672 Capsella rubella HOM05D009492 ORTHO05D011693 4.1e-57 226.9 602 32.6
Carub.0007s3212 Capsella rubella HOM05D009492 ORTHO05D011693 7.2e-54 216.1 571 33.1
Carub.0002s1048 Capsella rubella HOM05D009492 ORTHO05D011693 6.7e-52 209.5 364 39.6
Carub.0005s0956 Capsella rubella HOM05D009492 ORTHO05D011693 4.2e-46 190.3 618 29.4
Carub.0003s2742 Capsella rubella HOM05D009492 ORTHO05D011693 6.1e-45 186.4 593 29.5
Carub.0006s2644 Capsella rubella HOM05D009492 ORTHO05D011693 1.8e-44 184.9 534 31.3
Carub.0001s3424 Capsella rubella HOM05D009492 ORTHO05D011693 2.8e-42 177.6 576 29.5
Carub.0002s0942 Capsella rubella HOM05D009492 ORTHO05D011693 5.9e-40 169.9 377 34.7
Carub.0004s1788 Capsella rubella HOM05D009492 ORTHO05D011693 1.1e-38 165.6 578 28.5
Carub.0002s0975 Capsella rubella HOM05D009492 ORTHO05D011693 1.2e-37 162.2 546 27.8
Carub.0008s0741 Capsella rubella HOM05D009492 ORTHO05D011693 4.7e-37 160.2 612 27.5
Carub.0008s0719 Capsella rubella HOM05D009492 ORTHO05D011693 8.8e-36 156.0 474 30.6
Carub.0003s2830 Capsella rubella HOM05D009492 ORTHO05D011693 9.1e-33 146.0 589 26.5
Carub.0006s2663 Capsella rubella HOM05D009492 ORTHO05D011693 3.8e-31 140.6 122 53.3
Carub.0004s0637 Capsella rubella HOM05D009492 ORTHO05D011693 3.0e-28 131.0 501 29.5
AL2G18400 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.4e-27 127.5 249 32.1
AL8G11870 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.7e-26 124.0 371 29.6
AL4G14310 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.8e-25 121.7 240 30.4
CARHR115630 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.8e-25 121.7 229 29.3
Carub.0014s0006 Capsella rubella HOM05D009492 ORTHO05D011693 2.4e-25 121.3 205 35.1
AL8G33480 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.0e-23 115.9 267 29.2
AL4G24140 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.3e-23 115.5 241 30.3
AL3G38160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.3e-23 114.8 374 29.1
AL1G57330 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 8.6e-23 112.8 369 27.6
BcaC08g42951 Brassica carinata HOM05D006121 ORTHO05D009559 8.6e-23 112.8 201 30.8
AL4G17450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.3e-22 110.9 369 26.6
AL6G47370 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.6e-22 110.2 403 27.0
AT5G32590 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 9.5e-22 109.4 375 29.1
AL9U10230 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.8e-21 107.8 373 28.7
AL8G45410 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.6e-21 107.5 397 28.7
AL6G42690 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.7e-21 107.1 410 27.8
AL2G23360 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.8e-20 105.1 349 27.8
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.8e-20 105.1 521 25.1
BcaC09g49745 Brassica carinata HOM05D006121 ORTHO05D009559 1.8e-20 105.1 150 33.3
AL1G47450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.3e-20 104.8 502 25.5
AL5G12240 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.3e-20 104.8 406 28.1
Carub.0003s2904 Capsella rubella HOM05D006121 ORTHO05D009559 3.0e-20 104.4 353 26.1
AL1G65160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.8e-20 103.2 406 26.8
Carub.0002s0970 Capsella rubella HOM05D009492 ORTHO05D011693 6.8e-20 103.2 588 24.7
AL1G61970 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.5e-19 102.1 404 26.7
BcaC03g16521 Brassica carinata HOM05D006121 ORTHO05D009559 2.0e-19 101.7 124 37.1
BcaC09g49729 Brassica carinata HOM05D006121 ORTHO05D009559 2.2e-18 98.2 147 32.0
BcaC02g11248 Brassica carinata HOM05D006121 ORTHO05D009559 3.7e-18 97.4 158 31.6
CARHR184520 Cardamine hirsuta HOM05D008458 ORTHO05D010628 4.9e-18 97.1 175 29.7
BcaC05g27675 Brassica carinata HOM05D006121 ORTHO05D009559 8.3e-18 96.3 201 28.4
BcaC07g37147 Brassica carinata HOM05D006121 ORTHO05D009559 8.3e-18 96.3 199 28.6
BcaC03g15130 Brassica carinata HOM05D006121 ORTHO05D009559 1.1e-17 95.9 351 26.8
BcaC01g02132 Brassica carinata HOM05D006121 ORTHO05D009559 2.4e-17 94.7 125 35.2
BcaC05g27793 Brassica carinata HOM05D006121 ORTHO05D009559 3.2e-17 94.4 191 28.3
AL5G23160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.1e-17 94.0 385 27.0
BcaC04g21502 Brassica carinata HOM05D006121 ORTHO05D009559 9.2e-17 92.8 125 35.2
BcaC04g23210 Brassica carinata HOM05D006121 ORTHO05D009559 9.2e-17 92.8 188 28.2
BcaC09g49299 Brassica carinata HOM05D006121 ORTHO05D009559 9.2e-17 92.8 109 38.5
BcaC01g02238 Brassica carinata HOM05D006121 ORTHO05D009559 1.7e-15 88.6 182 29.1
BcaC03g16227 Brassica carinata HOM05D006121 ORTHO05D009559 3.0e-15 87.8 211 27.0
BcaC01g06835 Brassica carinata HOM05D006121 ORTHO05D009559 5.0e-15 87.0 113 35.4
AL3G37710 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.6e-15 86.7 406 25.9
AT1G36100 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 6.6e-15 86.7 92 42.4
AT3G43148 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 8.6e-15 86.3 88 44.3
BcaC07g37897 Brassica carinata HOM05D006121 ORTHO05D009559 1.1e-14 85.9 173 30.6
CARHR105800 Cardamine hirsuta HOM05D008458 ORTHO05D010628 3.3e-14 84.3 115 35.7
Carub.0003s2394 Capsella rubella HOM05D016834 ORTHO05D016863 5.6e-14 83.6 221 26.2
AL6G45550 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.2e-13 82.4 383 26.4
AT3G30230 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.2e-13 82.4 79 44.3
BcaC05g27433 Brassica carinata HOM05D006121 ORTHO05D009559 1.2e-13 82.4 108 38.9
Carub.0003s2886 Capsella rubella HOM05D016834 ORTHO05D016863 1.2e-13 82.4 237 27.0
Carub.0008s1221 Capsella rubella HOM05D016834 ORTHO05D016863 1.2e-13 82.4 257 27.6
Carub.0073s0002 Capsella rubella HOM05D016834 ORTHO05D016863 1.6e-13 82.0 177 26.6
BcaC06g36507 Brassica carinata HOM05D006121 ORTHO05D009559 2.1e-13 81.6 264 26.5
BcaC03g17371 Brassica carinata HOM05D006121 ORTHO05D009559 2.8e-13 81.3 159 30.2
Carub.0006s2612 Capsella rubella HOM05D016834 ORTHO05D016863 3.6e-13 80.9 201 28.9
CARHR053560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.4e-12 79.0 103 34.0
CARHR174650 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.4e-12 79.0 189 27.5
Sp4g04860 Schrenkiella parvula HOM05D010772 ORTHO05D005680 1.8e-12 78.6 218 27.1
CARHR118560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 4.0e-12 77.4 115 33.9
Carub.0006s0276 Capsella rubella HOM05D010629 ORTHO05D005680 6.8e-12 76.6 165 30.3
Carub.0007s2123 Capsella rubella HOM05D010629 ORTHO05D005680 6.8e-12 76.6 165 30.9
CARHR035710 Cardamine hirsuta HOM05D008458 ORTHO05D010628 6.8e-12 76.6 155 26.5
AT4G06688 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 8.9e-12 76.3 79 43.0
BcaC05g28468 Brassica carinata HOM05D006121 ORTHO05D009559 1.5e-11 75.5 95 35.8
Carub.0005s0837 Capsella rubella HOM05D010629 ORTHO05D005680 1.5e-11 75.5 176 26.7
Sp4g11160 Schrenkiella parvula HOM05D010772 ORTHO05D005680 2.0e-11 75.1 244 25.0
AT5G38190 Arabidopsis thaliana HOM05D034490 ORTHO05D019745 2.6e-11 74.7 132 33.3
Carub.0005s0210 Capsella rubella HOM05D010629 ORTHO05D005680 2.6e-11 74.7 162 30.2
BcaC02g11960 Brassica carinata HOM05D006121 ORTHO05D009559 3.4e-11 74.3 162 27.2
Sp7g05200 Schrenkiella parvula HOM05D002078 ORTHO05D005680 5.8e-11 73.6 153 25.5
AL3G43600 Arabidopsis lyrata HOM05D010629 ORTHO05D005680 7.5e-11 73.2 152 28.3
BolC7t41498H Brassica oleracea HOM05D006121 ORTHO05D009559 7.5e-11 73.2 139 30.2
BcaC05g28043 Brassica carinata HOM05D006121 ORTHO05D009559 1.3e-10 72.4 94 34.0
BolC2t09439H Brassica oleracea HOM05D003421 ORTHO05D003268 2.9e-10 71.2 153 26.8
BcaC03g16486 Brassica carinata HOM05D006121 ORTHO05D009559 4.9e-10 70.5 95 34.7
BolC5t33453H Brassica oleracea HOM05D003421 ORTHO05D003268 4.9e-10 70.5 210 24.8
BcaB07g33910 Brassica carinata HOM05D002078 ORTHO05D005680 6.4e-10 70.1 387 26.1
BolC1t03978H Brassica oleracea HOM05D003421 ORTHO05D003268 6.4e-10 70.1 229 28.8
BcaC04g20762 Brassica carinata HOM05D006121 ORTHO05D009559 1.9e-09 68.6 353 24.9
TWI14G0077 Tripterygium wilfordii HOM05D015010 ORTHO05D000116 1.9e-09 68.6 160 29.4
BolC3t19281H Brassica oleracea HOM05D003421 ORTHO05D003268 3.2e-09 67.8 154 22.7
BcaC01g05819 Brassica carinata HOM05D006121 ORTHO05D009559 5.4e-09 67.0 367 24.8
AT1G32010 Arabidopsis thaliana HOM05D010629 ORTHO05D019745 7.0e-09 66.6 301 24.6
BcaC02g09767 Brassica carinata HOM05D006121 ORTHO05D009559 7.0e-09 66.6 91 36.3
AL8G10170 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.7e-08 64.7 367 24.5
CARHR150680 Cardamine hirsuta HOM05D008458 ORTHO05D010628 3.5e-08 64.3 62 46.8
BcaC01g01023 Brassica carinata HOM05D002078 ORTHO05D005680 4.6e-08 63.9 163 25.8
Carub.0108s0001 Capsella rubella HOM05D016834 ORTHO05D016863 4.6e-08 63.9 411 24.1
CARHR119450 Cardamine hirsuta HOM05D006121 ORTHO05D043487 4.6e-08 63.9 85 38.8
AT3G42060 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 6.0e-08 63.5 369 21.7
AL5G19630 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 7.8e-08 63.2 292 25.7
Carub.0004s1088 Capsella rubella HOM05D010629 ORTHO05D005680 1.0e-07 62.8 140 30.7
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.3e-07 62.4 124 26.6
BcaC04g21481 Brassica carinata HOM05D009676 ORTHO05D014479 1.3e-07 62.4 129 31.0
BcaC02g11611 Brassica carinata HOM05D002078 ORTHO05D005680 1.7e-07 62.0 242 24.8
AL9U10150 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 2.3e-07 61.6 91 34.1
BcaC04g20823 Brassica carinata HOM05D006121 ORTHO05D009559 3.0e-07 61.2 79 35.4
AL3G49830 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 6.6e-07 60.1 91 33.0
BolC8t48271H Brassica oleracea HOM05D003421 ORTHO05D003268 6.6e-07 60.1 110 30.0
BolC1t03345H Brassica oleracea HOM05D003421 ORTHO05D003268 1.1e-06 59.3 121 28.1
BcaC02g10668 Brassica carinata HOM05D002078 ORTHO05D005680 1.5e-06 58.9 155 24.5
BraA01t02722Z Brassica rapa HOM05D003421 ORTHO05D003268 1.5e-06 58.9 164 25.0
Oeu033039.1 Olea europaea HOM05D002774 ORTHO05D000116 1.5e-06 58.9 139 29.5
AL3G15920 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 1.9e-06 58.5 161 24.8
BcaC05g26934 Brassica carinata HOM05D002078 ORTHO05D005680 1.9e-06 58.5 154 24.7
BcaC05g27420 Brassica carinata HOM05D002078 ORTHO05D005680 1.9e-06 58.5 291 24.7
CARHR153510 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.9e-06 58.5 62 40.3
CARHR181790 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.9e-06 58.5 62 40.3
BolC4t23765H Brassica oleracea HOM05D003421 ORTHO05D003268 2.5e-06 58.2 165 23.6
Carub.0072s0001 Capsella rubella HOM05D010629 ORTHO05D005680 2.5e-06 58.2 243 23.5
CARHR181090 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.5e-06 58.2 67 35.8
BcaC04g21351 Brassica carinata HOM05D002078 ORTHO05D005680 3.3e-06 57.8 134 24.6
BcaC08g44804 Brassica carinata HOM05D002078 ORTHO05D005680 3.3e-06 57.8 134 24.6
A08p08190 Brassica napus HOM05D008596 ORTHO05D003268 3.3e-06 57.8 218 21.1
BolC3t20163H Brassica oleracea HOM05D006121 ORTHO05D009559 3.3e-06 57.8 91 29.7
A01p26930 Brassica napus HOM05D008596 ORTHO05D003268 4.3e-06 57.4 133 21.8
BolC8t47514H Brassica oleracea HOM05D003421 ORTHO05D003268 4.3e-06 57.4 216 20.8
Carub.0003s2807 Capsella rubella HOM05D010629 ORTHO05D005680 4.3e-06 57.4 133 24.8
Carub.0007s3050 Capsella rubella HOM05D010629 ORTHO05D005680 4.3e-06 57.4 111 27.9
AT1G20400 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 5.6e-06 57.0 365 24.1
BcaC03g14208 Brassica carinata HOM05D002078 ORTHO05D005680 5.6e-06 57.0 155 23.9
BcaC05g28690 Brassica carinata HOM05D002078 ORTHO05D005680 5.6e-06 57.0 154 24.0
BolC2t10336H Brassica oleracea HOM05D003421 ORTHO05D003268 5.6e-06 57.0 154 28.6
AT2G11010 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 7.3e-06 56.6 215 22.3
BcaC08g42838 Brassica carinata HOM05D006121 ORTHO05D009559 7.3e-06 56.6 75 36.0
BcaC04g23066 Brassica carinata HOM05D006121 ORTHO05D009559 9.5e-06 56.2 80 36.2


User provided reference genes

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