Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 5.9e-189 664.1 343 100.0
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 3.9e-156 555.1 311 94.5
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 1.3e-140 503.4 311 86.8
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 1.1e-134 483.8 311 83.3
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 1.6e-133 479.9 311 83.6
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 1.3e-130 470.3 311 81.0
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 1.9e-126 456.4 313 79.6
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 5.4e-126 454.9 312 78.5
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 7.9e-125 451.1 312 79.2
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 7.9e-125 451.1 312 78.5
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 2.5e-123 446.0 312 77.9
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 2.5e-123 446.0 312 77.9
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 1.5e-115 420.2 315 73.7
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 1.4e-84 317.4 310 61.3
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 1.0e-68 264.6 312 51.6
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 2.3e-68 263.5 316 50.9
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 8.8e-68 261.5 313 50.2
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 1.2e-67 261.2 313 51.1
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 2.2e-66 256.9 307 49.8
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 2.8e-66 256.5 314 51.0
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 9.1e-65 251.5 311 48.6
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 9.1e-65 251.5 313 49.5
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 1.2e-64 251.1 309 49.5
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 4.5e-64 249.2 341 49.3
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 2.3e-63 246.9 307 50.8
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 5.0e-63 245.7 312 49.4
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 5.0e-63 245.7 311 48.9
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 3.3e-62 243.0 314 46.5
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 2.1e-61 240.4 312 48.7
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 4.7e-61 239.2 311 49.5
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.0e-60 238.0 314 47.1
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.0e-60 238.0 320 49.7
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 1.4e-60 237.7 314 47.1
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 6.8e-60 235.3 316 45.6
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 6.8e-60 235.3 311 47.6
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 1.5e-59 234.2 314 50.0
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.6e-59 233.4 317 45.1
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 1.3e-58 231.1 314 46.2
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 1.3e-58 231.1 312 48.1
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 2.2e-58 230.3 312 45.8
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.8e-58 229.9 315 47.0
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 3.7e-58 229.6 311 46.6
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 1.1e-57 228.0 311 51.1
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.1e-57 228.0 311 51.1
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.4e-57 227.6 311 51.1
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 1.4e-57 227.6 321 47.0
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 5.4e-57 225.7 317 43.8
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 7.0e-57 225.3 311 50.8
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 7.0e-57 225.3 311 48.9
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 1.2e-56 224.6 318 45.9
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 1.2e-56 224.6 321 43.3
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 1.2e-56 224.6 312 47.4
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.7e-56 223.4 317 49.8
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 3.5e-56 223.0 325 44.3
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 4.5e-56 222.6 309 44.0
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 7.8e-56 221.9 313 44.7
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 1.3e-55 221.1 311 44.1
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 1.7e-55 220.7 307 45.6
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.9e-55 219.9 313 48.6
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 2.9e-55 219.9 295 44.1
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 3.9e-55 219.5 312 41.3
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 1.1e-54 218.0 311 44.1
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 1.5e-54 217.6 312 43.9
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.9e-54 217.2 320 41.6
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.3e-54 216.5 315 41.9
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 5.6e-54 215.7 314 44.6
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 1.2e-53 214.5 318 45.6
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 1.2e-53 214.5 312 43.9
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 1.2e-53 214.5 256 50.8
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 1.6e-53 214.2 309 45.0
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 2.8e-53 213.4 322 45.0
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 3.6e-53 213.0 305 44.9
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 3.6e-53 213.0 318 42.1
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 4.0e-52 209.5 315 43.2
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 5.2e-52 209.1 311 43.1
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 5.2e-52 209.1 292 43.8
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 6.8e-52 208.8 317 43.8
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 8.9e-52 208.4 314 42.4
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 1.2e-51 208.0 312 43.6
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 2.0e-51 207.2 315 43.2
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 2.0e-51 207.2 315 43.2
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 3.4e-51 206.5 275 45.8
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 3.4e-51 206.5 321 43.0
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 9.8e-51 204.9 312 43.3
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 3.7e-50 203.0 309 42.1
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 6.4e-50 202.2 308 43.8
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 8.3e-50 201.8 294 44.6
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 1.4e-49 201.1 317 42.9
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 1.9e-49 200.7 310 41.3
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 2.4e-49 200.3 318 40.6
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 7.0e-49 198.7 317 42.6
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 1.6e-48 197.6 311 41.5
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 2.0e-48 197.2 301 43.9
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 7.8e-48 195.3 332 41.0
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 7.8e-48 195.3 332 41.0
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 7.8e-48 195.3 309 43.4
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 3.0e-47 193.4 322 42.5
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 3.0e-47 193.4 321 41.1
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 5.0e-47 192.6 312 41.3
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 1.5e-46 191.0 288 42.4
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 1.9e-46 190.7 296 43.2
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 2.5e-46 190.3 295 44.4
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 3.3e-46 189.9 300 42.3
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.1e-44 184.9 313 39.0
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 2.3e-44 183.7 282 43.3
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 1.2e-43 181.4 308 41.6
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.2e-43 181.4 297 41.1
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 2.0e-43 180.6 276 42.8
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 4.4e-43 179.5 203 55.7
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 9.8e-43 178.3 297 39.7
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 1.3e-42 177.9 280 41.1
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.3e-42 177.9 240 46.7
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 3.7e-42 176.4 251 46.6
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 3.7e-42 176.4 268 43.3
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.4e-41 174.5 296 39.9
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.2e-40 171.4 285 41.4
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.6e-40 171.0 285 41.4
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 1.1e-38 164.9 301 40.2
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 1.9e-38 164.1 274 40.1
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 6.0e-32 142.5 263 40.3
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 6.8e-28 129.0 159 49.7
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 8.7e-23 112.1 289 33.2
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 9.6e-22 108.6 177 40.7
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 1.8e-20 104.4 129 48.8
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 7.9e-16 89.0 233 32.2
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 2.0e-11 74.3 104 45.2
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 1.3e-10 71.6 137 37.2
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 5.4e-09 66.2 164 33.5
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 2.1e-08 64.3 85 47.1
C03p36620 Brassica napus HOM05D006030 ORTHO05D007475 4.3e-06 56.6 55 65.5


User provided reference genes

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