Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.6e-197 691.0 348 100.0
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.8e-58 229.6 298 49.7
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 1.9e-54 217.2 137 75.9
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 5.8e-51 205.7 205 54.6
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-35 154.5 122 61.5
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 2.6e-35 153.7 125 61.6
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 2.5e-33 147.1 139 57.6
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 7.9e-32 142.1 132 56.8
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 9.7e-30 135.2 127 54.3
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 2.8e-29 133.7 132 54.5
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-26 125.2 137 49.6
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 5.5e-25 119.4 171 44.4
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 7.2e-25 119.0 120 52.5
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.3e-21 108.2 127 45.7
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 2.2e-18 97.4 122 47.5
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 2.2e-18 97.4 57 77.2
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 5.5e-17 92.8 140 45.0
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 4.0e-15 86.7 130 40.8
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 5.7e-14 82.8 136 38.2
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 5.7e-14 82.8 131 42.7
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 7.5e-14 82.4 113 42.5
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 9.7e-14 82.0 94 46.8
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 9.7e-14 82.0 124 38.7
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 9.7e-14 82.0 124 38.7
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 9.7e-14 82.0 131 41.2
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.3e-13 81.6 130 43.1
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 1.3e-13 81.6 140 37.1
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 1.7e-13 81.3 113 41.6
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 1.7e-13 81.3 124 38.7
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.2e-13 80.9 141 38.3
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 2.2e-13 80.9 124 37.9
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-13 80.5 124 37.9
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 2.8e-13 80.5 124 38.7
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.7e-13 80.1 138 39.1
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 3.7e-13 80.1 124 37.9
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 3.7e-13 80.1 124 37.9
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 4.8e-13 79.7 136 35.3
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 6.3e-13 79.3 117 40.2
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 6.3e-13 79.3 124 37.9
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 6.3e-13 79.3 125 38.4
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 8.2e-13 79.0 127 39.4
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 1.1e-12 78.6 124 37.1
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 1.1e-12 78.6 128 38.3
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 1.8e-12 77.8 130 38.5
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 1.8e-12 77.8 125 38.4
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 2.4e-12 77.4 83 45.8
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 2.4e-12 77.4 83 45.8
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 7.0e-12 75.9 133 39.8
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 7.0e-12 75.9 129 36.4
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 7.0e-12 75.9 129 36.4
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 7.0e-12 75.9 124 37.9
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 9.1e-12 75.5 124 35.5
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 9.1e-12 75.5 124 35.5
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 9.1e-12 75.5 129 39.5
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.2e-11 75.1 131 34.4
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-11 75.1 124 36.3
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-11 75.1 124 35.5
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-11 75.1 124 35.5
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 2.0e-11 74.3 129 38.0
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 2.7e-11 73.9 113 38.1
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 2.7e-11 73.9 113 38.1
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 4.5e-11 73.2 145 34.5
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 4.5e-11 73.2 130 37.7
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 4.5e-11 73.2 130 37.7
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 5.9e-11 72.8 121 37.2
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 5.9e-11 72.8 130 38.5
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 7.7e-11 72.4 83 45.8
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 7.7e-11 72.4 130 37.7
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.3e-10 71.6 121 34.7
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 1.3e-10 71.6 128 37.5
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 1.3e-10 71.6 128 37.5
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 1.3e-10 71.6 120 38.3
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 1.3e-10 71.6 128 37.5
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 1.3e-10 71.6 120 38.3
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 1.7e-10 71.2 122 39.3
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 2.9e-10 70.5 145 33.1
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 2.9e-10 70.5 130 36.9
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 2.9e-10 70.5 122 39.3
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 2.9e-10 70.5 130 36.9
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 2.9e-10 70.5 130 36.9
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.0e-10 69.7 133 33.1
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 5.0e-10 69.7 147 33.3
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 5.0e-10 69.7 144 32.6
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 5.0e-10 69.7 144 32.6
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 6.5e-10 69.3 124 36.3
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.5e-09 68.2 141 36.2
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.9e-09 67.8 131 34.4
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.9e-09 67.8 141 36.2
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.5e-09 67.4 125 36.8
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.2e-09 67.0 126 31.0
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 3.2e-09 67.0 134 38.1
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 4.2e-09 66.6 158 32.9
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 5.5e-09 66.2 121 34.7
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 5.5e-09 66.2 59 52.5
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 5.5e-09 66.2 133 33.8
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 9.4e-09 65.5 121 35.5
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 9.4e-09 65.5 140 34.3
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 9.4e-09 65.5 120 34.2
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 9.4e-09 65.5 120 35.8
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 9.4e-09 65.5 120 34.2
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 9.4e-09 65.5 120 34.2
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 9.4e-09 65.5 120 34.2
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.6e-08 64.7 107 32.7
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 2.1e-08 64.3 151 33.1
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 2.1e-08 64.3 152 35.5
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.7e-08 63.2 121 31.4
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.7e-08 63.2 122 34.4
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.7e-08 63.2 128 34.4
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.1e-08 62.8 69 47.8
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.0e-08 62.4 111 36.0
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 1.0e-07 62.0 58 48.3
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.0e-07 62.0 130 32.3
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.0e-07 62.0 124 32.3
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.4e-07 61.6 135 29.6
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 1.4e-07 61.6 145 33.8
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.4e-07 61.6 165 31.5
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.8e-07 61.2 140 32.9
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.8e-07 61.2 140 32.9
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 2.3e-07 60.8 142 35.9
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 3.0e-07 60.5 61 49.2
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 3.0e-07 60.5 132 35.6
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 4.0e-07 60.1 146 28.8
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 5.2e-07 59.7 63 46.0
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 5.2e-07 59.7 131 35.1
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 8.8e-07 58.9 61 47.5
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 1.2e-06 58.5 162 30.9
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.0e-06 57.8 122 29.5
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.0e-06 57.8 59 47.5
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.4e-06 57.0 85 37.6
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 4.4e-06 56.6 100 34.0
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 4.4e-06 56.6 153 32.0
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.4e-06 56.6 167 30.5


User provided reference genes

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