Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 1.4e-129 466.5 264 100.0
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 1.5e-94 350.1 260 78.5
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 7.8e-72 274.6 181 74.6
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 6.4e-66 255.0 179 70.9
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 6.4e-66 255.0 179 70.9
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 6.4e-66 255.0 179 70.9
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 9.2e-65 251.1 185 71.9
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 9.2e-65 251.1 262 61.5
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 1.6e-61 240.4 262 59.9
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 9.5e-54 214.5 272 54.8
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 2.1e-53 213.4 254 62.6
Sp6g03580 Schrenkiella parvula HOM05D012310 ORTHO05D012594 4.7e-53 212.2 169 63.9
Carub.0006s3350 Capsella rubella HOM05D012310 ORTHO05D012594 7.8e-48 194.9 174 62.6
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.4e-25 120.9 161 45.3
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 2.4e-25 120.2 164 45.1
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.4e-20 104.4 177 39.5
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 2.4e-20 103.6 182 40.7
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 2.4e-20 103.6 184 40.8
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 2.4e-20 103.6 184 40.8
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.3e-20 102.4 206 35.0
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 9.0e-20 101.7 172 39.0
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.0e-19 100.5 162 40.7
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 2.6e-19 100.1 178 39.3
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 2.6e-19 100.1 178 39.3
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 2.6e-19 100.1 178 39.3
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 2.6e-19 100.1 169 41.4
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 3.4e-19 99.8 170 37.6
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 4.5e-19 99.4 177 39.0
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 5.8e-19 99.0 163 41.1
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.8e-19 99.0 169 37.9
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 1.3e-18 97.8 183 38.8
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 1.7e-18 97.4 183 37.2
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 2.2e-18 97.1 194 38.7
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 6.5e-18 95.5 165 41.2
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 6.5e-18 95.5 162 37.0
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 8.4e-18 95.1 163 39.9
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 8.4e-18 95.1 163 39.9
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 1.4e-17 94.4 177 37.9
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.2e-17 93.2 177 36.2
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.2e-17 92.8 163 40.5
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 5.5e-17 92.4 165 39.4
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 5.5e-17 92.4 177 37.3
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 7.1e-17 92.0 164 40.9
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 2.7e-16 90.1 160 40.0
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.5e-16 89.7 177 35.6
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 4.6e-16 89.4 178 37.1
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 6.0e-16 89.0 171 35.1
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 7.9e-16 88.6 179 38.0
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 1.0e-15 88.2 178 36.5
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 1.0e-15 88.2 167 35.9
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.3e-15 87.8 161 39.8
AL4G46480 Arabidopsis lyrata HOM05D012310 ORTHO05D080413 2.3e-15 87.0 57 71.9
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.0e-15 86.7 180 37.8
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.9e-15 86.3 181 34.3
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 3.9e-15 86.3 182 34.6
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 5.1e-15 85.9 171 34.5
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 6.7e-15 85.5 166 39.2
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.9e-14 84.0 188 33.5
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.9e-14 84.0 170 34.1
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 1.9e-14 84.0 163 33.7
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 1.9e-14 84.0 166 38.0
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 4.3e-14 82.8 175 34.9
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 5.7e-14 82.4 145 40.0
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 2.8e-13 80.1 179 33.0
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 2.8e-13 80.1 179 33.0
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.7e-13 79.7 166 37.3
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.7e-13 79.7 136 38.2
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.7e-13 79.7 191 34.0
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 3.7e-13 79.7 163 36.2
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 6.3e-13 79.0 180 34.4
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.4e-12 77.8 175 33.7
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 4.1e-12 76.3 166 35.5
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 5.3e-12 75.9 154 37.0
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 5.3e-12 75.9 164 34.8
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 6.9e-12 75.5 167 34.7
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 6.9e-12 75.5 175 33.7
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 1.5e-11 74.3 171 32.2
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 4.5e-11 72.8 163 31.9
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 5.9e-11 72.4 167 32.9
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 7.6e-11 72.0 170 31.8
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 1.0e-10 71.6 164 34.8
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.2e-10 70.5 161 32.9
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.9e-10 70.1 174 31.6
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 5.0e-10 69.3 184 32.1
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 5.0e-10 69.3 163 33.1
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 6.5e-10 68.9 162 32.1
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.1e-09 68.2 169 30.2
THA.LOC104809658 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.9e-09 67.4 117 41.0
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 2.5e-09 67.0 165 30.9
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.5e-09 67.0 88 45.5
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 3.2e-09 66.6 167 29.9
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 5.5e-09 65.9 158 31.6
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 5.5e-09 65.9 85 45.9
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 7.2e-09 65.5 97 40.2
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 9.3e-09 65.1 163 33.1
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 9.3e-09 65.1 171 33.3
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 3.6e-08 63.2 183 29.5
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.0e-07 61.6 156 30.8
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.0e-07 61.6 145 33.8
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 1.3e-07 61.2 159 29.6
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 1.3e-07 61.2 76 47.4
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-06 58.2 163 27.6
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-06 58.2 168 32.1
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 1.1e-06 58.2 145 28.3
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 1.5e-06 57.8 145 28.3
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 5.7e-06 55.8 163 27.6
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 7.4e-06 55.5 89 38.2
THA.LOC104801560 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 9.7e-06 55.1 139 28.8


User provided reference genes

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