Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 7.0e-131 470.7 251 100.0
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 9.6e-88 327.4 225 79.6
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 4.2e-83 312.0 193 79.8
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.5e-80 302.8 256 68.0
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 6.3e-47 191.8 239 47.3
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 8.2e-39 164.9 245 44.1
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 1.1e-38 164.5 182 50.5
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 5.3e-38 162.2 251 44.6
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 5.3e-38 162.2 251 44.6
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 2.7e-37 159.8 182 50.0
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 5.9e-37 158.7 256 42.2
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 1.7e-36 157.1 257 43.6
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 2.2e-36 156.8 199 45.2
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 2.5e-35 153.3 137 55.5
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.8e-30 137.1 173 48.0
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 4.1e-30 136.0 203 42.9
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 2.0e-29 133.7 152 50.7
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 3.5e-29 132.9 169 48.5
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 4.5e-29 132.5 152 50.7
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 5.9e-29 132.1 148 52.7
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 2.2e-28 130.2 197 42.6
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 2.2e-28 130.2 197 42.6
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 5.0e-28 129.0 203 41.9
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.1e-27 127.9 122 53.3
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 1.5e-27 127.5 203 41.4
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 1.6e-26 124.0 203 42.4
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.0e-26 121.7 136 47.1
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.0e-25 121.3 116 53.4
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 4.0e-25 119.4 187 40.6
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.8e-25 118.2 187 40.6
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 8.8e-25 118.2 200 39.5
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 8.8e-25 118.2 200 39.5
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 1.2e-24 117.9 201 39.3
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 1.2e-24 117.9 111 55.9
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.6e-24 116.7 182 41.2
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.6e-24 116.7 172 43.0
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.4e-24 115.9 164 44.5
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 1.3e-23 114.4 144 49.3
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 2.8e-23 113.2 271 33.9
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 4.9e-23 112.5 116 49.1
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.4e-22 110.9 176 42.6
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 1.8e-22 110.5 163 42.3
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 1.8e-22 110.5 163 42.3
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 2.4e-22 110.2 167 38.9
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.1e-22 109.8 203 38.9
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.2e-21 107.8 201 36.8
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 1.2e-21 107.8 150 41.3
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 1.6e-21 107.5 142 43.0
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 1.6e-21 107.5 117 46.2
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 2.0e-21 107.1 110 48.2
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 3.5e-21 106.3 109 47.7
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.5e-21 106.3 109 47.7
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.5e-21 106.3 109 47.7
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.9e-21 105.5 176 41.5
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 5.9e-21 105.5 147 40.1
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 5.9e-21 105.5 110 47.3
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 1.3e-20 104.4 141 41.1
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 1.3e-20 104.4 116 47.4
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 2.3e-20 103.6 154 43.5
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 2.3e-20 103.6 154 43.5
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 2.3e-20 103.6 155 43.2
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 2.3e-20 103.6 139 41.7
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 3.8e-20 102.8 187 37.4
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 3.8e-20 102.8 109 48.6
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 6.6e-20 102.1 188 36.7
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 8.6e-20 101.7 187 37.4
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 8.6e-20 101.7 117 46.2
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 1.1e-19 101.3 172 37.8
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 1.1e-19 101.3 172 37.8
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 1.1e-19 101.3 135 42.2
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 1.1e-19 101.3 110 48.2
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.5e-19 100.9 173 39.9
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 1.5e-19 100.9 186 36.0
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 1.5e-19 100.9 174 37.4
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 1.5e-19 100.9 186 36.0
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.9e-19 100.5 117 44.4
Aa31LG7G1510 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.5e-19 100.1 117 47.9
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.5e-19 100.1 111 47.7
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.5e-19 100.1 116 46.6
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 2.5e-19 100.1 109 50.5
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 2.5e-19 100.1 110 48.2
Aa31LG6G10180 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.3e-19 99.4 175 38.9
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 5.6e-19 99.0 110 47.3
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 5.6e-19 99.0 110 47.3
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.3e-19 98.6 200 35.0
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 9.5e-19 98.2 120 42.5
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 9.5e-19 98.2 118 44.9
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 9.5e-19 98.2 111 44.1
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.2e-18 97.8 117 45.3
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 1.2e-18 97.8 109 45.0
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.6e-18 97.4 109 45.9
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 1.6e-18 97.4 109 45.9
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 1.6e-18 97.4 118 44.9
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 2.1e-18 97.1 114 46.5
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 2.1e-18 97.1 109 48.6
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.8e-18 96.7 118 44.9
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 2.8e-18 96.7 109 45.9
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 8.0e-18 95.1 261 33.3
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.4e-17 94.4 160 36.9
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 1.8e-17 94.0 113 42.5
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 2.3e-17 93.6 260 32.3
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.0e-17 93.2 92 55.4
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 4.0e-17 92.8 109 43.1
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 5.2e-17 92.4 112 44.6
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 5.2e-17 92.4 115 41.7
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 5.2e-17 92.4 109 45.0
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 5.2e-17 92.4 140 35.7
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 6.8e-17 92.0 124 41.1
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 6.8e-17 92.0 124 41.1
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 8.9e-17 91.7 140 35.0
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 8.9e-17 91.7 140 35.0
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 8.9e-17 91.7 112 44.6
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 1.2e-16 91.3 109 43.1
Aa31LG7G1550 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.0e-16 90.5 126 42.9
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 2.0e-16 90.5 115 42.6
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 2.0e-16 90.5 107 40.2
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 3.4e-16 89.7 256 31.6
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 4.4e-16 89.4 109 44.0
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 4.4e-16 89.4 109 39.4
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 5.7e-16 89.0 112 43.8
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 5.7e-16 89.0 142 39.4
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 5.7e-16 89.0 109 41.3
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 5.7e-16 89.0 134 40.3
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 7.5e-16 88.6 114 40.4
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 7.5e-16 88.6 113 43.4
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 7.5e-16 88.6 109 39.4
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 7.5e-16 88.6 112 43.8
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 7.5e-16 88.6 115 42.6
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 7.5e-16 88.6 108 41.7
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 1.3e-15 87.8 119 46.2
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.7e-15 87.4 109 45.0
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 2.2e-15 87.0 109 42.2
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 2.9e-15 86.7 142 38.7
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.9e-15 86.7 127 39.4
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 3.7e-15 86.3 107 43.9
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.9e-15 85.9 119 42.9
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 1.1e-14 84.7 109 38.5
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 1.4e-14 84.3 112 39.3
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 1.4e-14 84.3 110 40.9
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 1.8e-14 84.0 157 43.9
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 1.8e-14 84.0 113 40.7
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 2.4e-14 83.6 111 38.7
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 2.4e-14 83.6 154 34.4
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 3.2e-14 83.2 109 41.3
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 3.2e-14 83.2 168 32.1
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 4.1e-14 82.8 110 42.7
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 4.1e-14 82.8 110 42.7
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 7.0e-14 82.0 110 42.7
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 9.2e-14 81.6 114 40.4
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 1.2e-13 81.3 111 40.5
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.2e-13 81.3 105 43.8
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 1.2e-13 81.3 111 40.5
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 1.2e-13 81.3 111 40.5
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 1.6e-13 80.9 110 41.8
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 2.7e-13 80.1 110 41.8
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 1.0e-12 78.2 109 42.2
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 1.7e-12 77.4 196 30.1
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 1.1e-11 74.7 109 34.9
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 1.5e-11 74.3 113 37.2
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 2.5e-11 73.6 130 34.6
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 5.6e-11 72.4 102 36.3
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 7.3e-11 72.0 206 30.6
BcaC01g00056 Brassica carinata HOM05D010480 ORTHO05D003856 1.2e-10 71.2 116 40.5
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 1.6e-10 70.9 115 35.7
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 2.8e-10 70.1 76 48.7
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 3.6e-10 69.7 115 36.5
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.8e-09 67.4 118 36.4
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 1.8e-09 67.4 197 31.5
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.3e-09 67.0 82 41.5
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 5.2e-09 65.9 117 33.3
Aa31LG8G17180 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.2e-08 64.7 58 56.9
ATR0594G191 Amborella trichopoda HOM05D020218 ORTHO05D013427 1.5e-08 64.3 116 33.6
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 6.4e-07 58.9 165 30.9
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 1.9e-06 57.4 108 31.5
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 1.9e-06 57.4 114 33.3
BcaB02g09091 Brassica carinata HOM05D010480 ORTHO05D003856 5.4e-06 55.8 40 57.5
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 5.4e-06 55.8 63 42.9
ClCG08G014520 Citrullus lanatus HOM05D000001 ORTHO05D009054 9.2e-06 55.1 117 34.2


User provided reference genes

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