Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 2.0e-101 372.5 193 100.0
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.8e-49 199.9 237 54.4
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 3.8e-36 155.6 130 61.5
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 5.0e-36 155.2 131 62.6
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 5.0e-36 155.2 131 62.6
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 3.3e-35 152.5 130 60.8
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 1.0e-33 147.5 133 60.2
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 8.9e-33 144.4 133 59.4
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 8.9e-33 144.4 133 59.4
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 5.7e-32 141.7 131 55.7
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 2.8e-31 139.4 132 54.5
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 2.4e-30 136.3 132 56.8
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.2e-30 136.0 128 55.5
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 1.6e-29 133.7 130 54.6
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 4.6e-29 132.1 130 53.8
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 1.0e-28 131.0 130 54.6
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.3e-28 130.6 130 53.8
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 3.9e-28 129.0 130 53.8
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 3.9e-28 129.0 133 52.6
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.3e-27 125.9 125 49.6
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 3.3e-27 125.9 130 52.3
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.6e-27 125.2 129 51.2
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.3e-27 124.8 128 51.6
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 1.2e-26 124.0 127 49.6
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.0e-25 119.0 130 46.9
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 5.2e-25 118.6 126 49.2
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 5.2e-25 118.6 126 49.2
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 5.2e-25 118.6 126 49.2
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.8e-25 118.2 129 47.3
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.5e-24 117.1 126 47.6
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.0e-24 116.7 141 47.5
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 3.4e-24 115.9 126 48.4
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.4e-24 115.5 113 48.7
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 7.5e-24 114.8 112 53.6
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.7e-23 113.6 134 49.3
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 4.9e-23 112.1 116 49.1
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 4.9e-23 112.1 126 48.4
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.3e-23 111.3 133 43.6
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.4e-22 110.5 139 43.9
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.9e-22 110.2 116 50.0
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.6e-21 107.1 128 46.9
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 2.0e-21 106.7 114 47.4
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.0e-21 105.1 129 46.5
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.0e-20 104.4 133 42.1
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 1.7e-20 103.6 118 44.9
Aa31LG7G1510 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.0e-20 102.8 129 45.7
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 6.6e-20 101.7 114 45.6
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 8.6e-20 101.3 133 45.9
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.1e-19 100.9 122 44.3
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 1.1e-19 100.9 117 39.3
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 1.1e-19 100.9 128 46.1
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 1.9e-19 100.1 82 62.2
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 4.3e-19 99.0 118 42.4
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 4.3e-19 99.0 118 42.4
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 4.3e-19 99.0 118 42.4
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 2.1e-18 96.7 135 40.7
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 2.8e-18 96.3 118 40.7
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 2.8e-18 96.3 120 40.8
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 2.8e-18 96.3 140 39.3
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 3.6e-18 95.9 137 40.1
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 3.6e-18 95.9 137 40.1
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 4.7e-18 95.5 129 40.3
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 4.7e-18 95.5 129 40.3
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 4.7e-18 95.5 118 40.7
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 4.7e-18 95.5 117 41.9
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.1e-18 94.7 114 45.6
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 3.1e-17 92.8 133 42.9
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 3.1e-17 92.8 133 42.9
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 3.1e-17 92.8 118 39.8
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 4.0e-17 92.4 117 38.5
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 4.0e-17 92.4 137 38.7
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 6.8e-17 91.7 122 38.5
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 8.9e-17 91.3 118 37.3
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 8.9e-17 91.3 118 37.3
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 1.5e-16 90.5 130 41.5
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 2.6e-16 89.7 131 42.7
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 2.6e-16 89.7 131 42.7
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 2.6e-16 89.7 132 40.2
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 3.4e-16 89.4 117 39.3
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 4.4e-16 89.0 118 38.1
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 4.4e-16 89.0 118 39.0
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 4.4e-16 89.0 117 40.2
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 7.5e-16 88.2 113 39.8
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 7.5e-16 88.2 114 43.0
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 9.8e-16 87.8 118 38.1
Aa31LG7G1550 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.3e-15 87.4 160 36.2
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 1.3e-15 87.4 135 40.0
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 1.3e-15 87.4 135 40.0
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.2e-15 86.7 118 41.5
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 2.2e-15 86.7 115 38.3
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 2.9e-15 86.3 135 40.0
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 2.9e-15 86.3 119 39.5
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 2.9e-15 86.3 114 41.2
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 4.9e-15 85.5 135 40.0
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 4.9e-15 85.5 118 37.3
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 6.4e-15 85.1 136 36.8
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 6.4e-15 85.1 111 38.7
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 8.3e-15 84.7 123 38.2
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 8.3e-15 84.7 119 37.8
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 8.3e-15 84.7 103 40.8
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 8.3e-15 84.7 116 38.8
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.9e-14 83.6 111 37.8
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 3.2e-14 82.8 120 36.7
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 4.1e-14 82.4 107 39.3
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 7.1e-14 81.6 103 39.8
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 9.2e-14 81.3 113 37.2
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.2e-13 80.9 92 50.0
Aa31LG6G10180 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.1e-13 80.1 101 43.6
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 2.1e-13 80.1 121 36.4
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 3.5e-13 79.3 132 32.6
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 7.8e-13 78.2 103 36.9
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 7.8e-13 78.2 120 36.7
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 7.8e-13 78.2 120 36.7
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 7.8e-13 78.2 121 35.5
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.0e-12 77.8 105 41.0
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 1.0e-12 77.8 193 30.1
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 1.3e-12 77.4 110 37.3
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 6.6e-12 75.1 107 38.3
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 1.1e-11 74.3 109 37.6
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 1.5e-11 73.9 108 38.0
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 1.5e-11 73.9 105 36.2
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 1.5e-11 73.9 109 37.6
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 2.5e-11 73.2 108 38.9
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 2.5e-11 73.2 105 36.2
Aa31LG6G9550 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.3e-11 72.8 73 46.6
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 3.3e-11 72.8 105 36.2
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 3.3e-11 72.8 106 37.7
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 4.3e-11 72.4 110 35.5
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 5.6e-11 72.0 105 35.2
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 7.3e-11 71.6 105 35.2
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 9.5e-11 71.2 122 34.4
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 9.5e-11 71.2 107 36.4
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 9.5e-11 71.2 101 34.7
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 9.5e-11 71.2 106 41.5
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 2.1e-10 70.1 106 36.8
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 2.1e-10 70.1 104 36.5
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 2.8e-10 69.7 105 38.1
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 2.8e-10 69.7 117 35.0
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 4.7e-10 68.9 111 39.6
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 4.7e-10 68.9 108 36.1
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.2e-10 68.6 80 47.5
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 8.1e-10 68.2 108 36.1
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 8.1e-10 68.2 110 37.3
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 1.1e-09 67.8 119 34.5
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 2.3e-09 66.6 103 36.9
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.3e-09 66.6 105 36.2
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 6.8e-09 65.1 117 34.2
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 1.2e-08 64.3 105 37.1
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 1.2e-08 64.3 105 37.1
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 2.6e-08 63.2 114 34.2
Aa31LG8G17180 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.4e-08 62.8 88 38.6
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 3.4e-08 62.8 101 35.6
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 7.6e-08 61.6 114 35.1
Aqoxy1G01498 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 9.9e-08 61.2 104 37.5
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 1.3e-07 60.8 127 33.1
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 1.3e-07 60.8 96 37.5
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 2.9e-07 59.7 106 32.1
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 6.4e-07 58.5 105 35.2
BcaB02g09091 Brassica carinata HOM05D010480 ORTHO05D003856 1.1e-06 57.8 57 45.6
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 7.1e-06 55.1 109 33.0


User provided reference genes

Program Settings