Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G03150 Arabidopsis thaliana HOM05D007479 ORTHO05D009416 1.1e-88 330.1 186 100.0
AL6G49780 Arabidopsis lyrata HOM05D007479 ORTHO05D009416 1.9e-80 302.8 186 84.9
CARHR251580 Cardamine hirsuta HOM05D007479 ORTHO05D009416 3.9e-70 268.5 189 76.2
Thhalv10029006m.g Eutrema salsugineum HOM05D007479 ORTHO05D009416 9.7e-69 263.8 193 74.1
Carub.0006s3390 Capsella rubella HOM05D007479 ORTHO05D009416 2.4e-67 259.2 190 73.2
Sp6g03190 Schrenkiella parvula HOM05D007479 ORTHO05D009416 2.4e-67 259.2 191 73.8
A09p02470 Brassica napus HOM05D007479 ORTHO05D009416 1.9e-64 249.6 189 71.4
BraA09t35894Z Brassica rapa HOM05D007479 ORTHO05D009416 1.9e-64 249.6 189 71.4
C09p02570 Brassica napus HOM05D007479 ORTHO05D009416 5.5e-64 248.1 189 70.4
BolC9t53187H Brassica oleracea HOM05D007479 ORTHO05D009416 7.2e-64 247.7 189 71.4
BcaB01g01976 Brassica carinata HOM05D007479 ORTHO05D009416 3.9e-62 241.9 188 69.7
THA.LOC104826012 Tarenaya hassleriana HOM05D007479 ORTHO05D009416 1.1e-48 197.2 195 59.5
CSS0010600 Camellia sinensis var. sinensis HOM05D007479 ORTHO05D009416 4.8e-44 181.8 127 70.9
CSS0014944 Camellia sinensis var. sinensis HOM05D007479 ORTHO05D009416 4.8e-44 181.8 127 70.9
TAR362G0341 Trochodendron aralioides HOM05D007479 ORTHO05D009416 6.3e-44 181.4 131 67.2
Atru.chr5.1282 Acer truncatum HOM05D007479 ORTHO05D009416 8.2e-44 181.0 118 73.7
Cpa.g.sc9.160 Carica papaya HOM05D007479 ORTHO05D009416 1.1e-43 180.6 109 78.0
Duzib133G1271 Durio zibethinus HOM05D007479 ORTHO05D009416 1.4e-43 180.3 137 67.2
Thecc.01G290200 Theobroma cacao HOM05D007479 ORTHO05D009416 1.8e-43 179.9 137 67.9
RcHm_v2.0_Chr6g0292541 Rosa chinensis HOM05D007479 ORTHO05D009416 5.3e-43 178.3 129 66.7
FvH4_2g24710 Fragaria vesca HOM05D007479 ORTHO05D009416 2.0e-42 176.4 134 66.4
FAN24G3263 Fragaria x ananassa HOM05D000112 ORTHO05D000564 2.0e-42 176.4 134 66.4
MD00G1056400 Malus domestica HOM05D007479 ORTHO05D009416 2.6e-42 176.0 124 66.9
FAN20G0962 Fragaria x ananassa HOM05D007479 ORTHO05D009416 3.5e-42 175.6 130 66.2
COL.COLO4_08032 Corchorus olitorius HOM05D007479 ORTHO05D009416 5.9e-42 174.9 137 62.8
TWI59G0977 Tripterygium wilfordii HOM05D007479 ORTHO05D009416 5.9e-42 174.9 130 68.5
TWI59G1446 Tripterygium wilfordii HOM05D007479 ORTHO05D009416 5.9e-42 174.9 130 68.5
Ciclev10022531m.g Citrus clementina HOM05D007479 ORTHO05D009416 1.0e-41 174.1 128 67.2
FAN27G0664 Fragaria x ananassa HOM05D007479 ORTHO05D009416 2.2e-41 172.9 130 65.4
Manes.01G213600 Manihot esculenta HOM05D007479 ORTHO05D009416 2.2e-41 172.9 115 71.3
Cfa006037 Carpinus fangiana HOM05D007479 ORTHO05D009416 2.9e-41 172.6 108 75.9
Gohir.D08G080200 Gossypium hirsutum HOM05D007479 ORTHO05D009416 2.9e-41 172.6 137 64.2
Gorai.004G085300 Gossypium raimondii HOM05D007479 ORTHO05D009416 2.9e-41 172.6 137 64.2
CiPaw.07G099900 Carya illinoinensis HOM05D007479 ORTHO05D009416 5.0e-41 171.8 113 73.5
QL12p023941 Quercus lobata HOM05D007479 ORTHO05D009416 6.5e-41 171.4 130 66.2
DCAR_002787 Daucus carota HOM05D007479 ORTHO05D009416 8.5e-41 171.0 109 75.2
HanXRQChr11g0350171 Helianthus annuus HOM05D007479 ORTHO05D009416 8.5e-41 171.0 125 64.8
GSVIVG01011009001 Vitis vinifera HOM05D007479 ORTHO05D009416 1.5e-40 170.2 124 66.9
CSS0048836 Camellia sinensis var. sinensis HOM05D007479 ORTHO05D009416 1.9e-40 169.9 127 66.1
MELO3C015894.2 Cucumis melo HOM05D007479 ORTHO05D009416 1.9e-40 169.9 111 71.2
Prupe.8G252200 Prunus persica HOM05D007479 ORTHO05D009416 2.5e-40 169.5 105 75.2
CsaV3_7G028280 Cucumis sativus L. HOM05D007479 ORTHO05D009416 3.2e-40 169.1 111 70.3
CANSAT25G0138 Cannabis sativa HOM05D007479 ORTHO05D009416 4.2e-40 168.7 109 71.6
Hma1.2p1_0209F.1_g089100 Hydrangea macrophylla HOM05D007479 ORTHO05D009416 4.2e-40 168.7 105 77.1
ClCG09G006510 Citrullus lanatus HOM05D007479 ORTHO05D009416 5.5e-40 168.3 111 69.4
Gohir.A08G072000 Gossypium hirsutum HOM05D007479 ORTHO05D009416 5.5e-40 168.3 133 65.4
Sed0025615 Sechium edule HOM05D007479 ORTHO05D009416 9.4e-40 167.5 111 69.4
Aqoxy2G03133 Aquilegia oxysepala HOM05D007479 ORTHO05D009416 1.2e-39 167.2 127 63.8
PGR044G0517 Punica granatum HOM05D007479 ORTHO05D009416 1.2e-39 167.2 109 69.7
SGA_v2.0_scaffold172G39060 Striga asiatica HOM05D007479 ORTHO05D009416 1.2e-39 167.2 125 65.6
AUR62036657 Chenopodium quinoa HOM05D007479 ORTHO05D009416 1.6e-39 166.8 107 72.0
Nn3g21272 Nelumbo nucifera HOM05D007479 ORTHO05D009416 1.6e-39 166.8 102 75.5
Oeu047908.1 Olea europaea HOM05D007479 ORTHO05D009416 1.6e-39 166.8 109 70.6
Actinidia00698 Actinidia chinensis HOM05D007479 ORTHO05D009416 2.1e-39 166.4 132 61.4
Rhsim13G0017200 Rhododendron simsii HOM05D007479 ORTHO05D009416 2.1e-39 166.4 105 72.4
Sabra14G0101000 Salix brachista HOM05D007479 ORTHO05D009416 2.1e-39 166.4 104 75.0
MSTRG.12593 Avicennia marina HOM05D007479 ORTHO05D009416 3.6e-39 165.6 126 65.9
Cc01_g20220 Coffea canephora HOM05D007479 ORTHO05D009416 3.6e-39 165.6 126 62.7
arahy.Tifrunner.gnm1.ann1.5G1G6M Arachis hypogaea HOM05D007479 ORTHO05D009416 8.0e-39 164.5 127 64.6
EL10Ac7g17366 Beta vulgaris HOM05D007479 ORTHO05D009416 1.0e-38 164.1 115 67.8
CDE09G0484 Ceratophyllum demersum HOM05D007479 ORTHO05D009416 1.4e-38 163.7 112 67.9
Migut.N01396 Erythranthe guttata HOM05D007479 ORTHO05D009416 1.4e-38 163.7 104 72.1
ECA236G2582 Erigeron canadensis HOM05D007479 ORTHO05D009416 1.8e-38 163.3 125 64.8
Eucgr.K03432 Eucalyptus grandis HOM05D007479 ORTHO05D009416 1.8e-38 163.3 107 72.9
Sopen06g035860 Solanum pennellii HOM05D007479 ORTHO05D009416 1.8e-38 163.3 110 67.3
MBI19_g32765_MAGBIO Magnolia biondii HOM05D007479 ORTHO05D009416 2.3e-38 162.9 107 72.0
Solyc06g084470.4 Solanum lycopersicum HOM05D007479 ORTHO05D009416 2.3e-38 162.9 110 67.3
Lalb_Chr18g0047491 Lupinus albus HOM05D007479 ORTHO05D009416 4.0e-38 162.2 124 62.9
Nitab4.5_0002093g0220 Nicotiana tabacum HOM05D007479 ORTHO05D009416 5.2e-38 161.8 120 65.8
Ca_09112_v3 Cicer arietinum L. HOM05D000335 ORTHO05D001251 8.8e-38 161.0 108 68.5
Haze_04810 Corylus avellana HOM05D007479 ORTHO05D009416 1.2e-37 160.6 134 63.4
Lj1g0024237 Lotus japonicus HOM05D007479 ORTHO05D009416 1.5e-37 160.2 107 68.2
Medtr7g107680 Medicago truncatula HOM05D007479 ORTHO05D009416 2.6e-37 159.5 127 61.4
Glyma.19G206000 Glycine max HOM05D007479 ORTHO05D009416 3.3e-37 159.1 107 69.2
Lsat_1_v5_gn_8_55221 Lactuca sativa HOM05D007479 ORTHO05D009416 3.3e-37 159.1 110 66.4
Nitab4.5_0004150g0020 Nicotiana tabacum HOM05D007479 ORTHO05D009416 3.3e-37 159.1 120 65.0
Phvul.001G201900 Phaseolus vulgaris HOM05D007479 ORTHO05D009416 3.3e-37 159.1 124 63.7
Potri.014G135400 Populus trichocarpa HOM05D007479 ORTHO05D009416 4.4e-37 158.7 127 64.6
PGSC0003DMG400024042 Solanum tuberosum HOM05D007479 ORTHO05D009416 4.4e-37 158.7 106 67.0
VMungo1383G0484 Vigna mungo HOM05D007479 ORTHO05D009416 4.4e-37 158.7 107 68.2
HPP92_010636 Vanilla planifolia HOM05D007479 ORTHO05D009416 5.7e-37 158.3 110 66.4
Hund18029 Selenicereus undatus HOM05D007479 ORTHO05D009416 9.7e-37 157.5 122 59.8
Sc17g0003550 Simmondsia chinensis HOM05D007479 ORTHO05D009416 9.7e-37 157.5 122 63.1
TPR.G32316 Trifolium pratense HOM05D007479 ORTHO05D009416 9.7e-37 157.5 102 69.6
PSO210G3923 Papaver somniferum HOM05D007479 ORTHO05D009416 1.3e-36 157.1 110 70.9
PSO572G0003 Papaver somniferum HOM05D007479 ORTHO05D009416 2.8e-36 156.0 131 61.1
PSO832G0938 Papaver somniferum HOM05D007479 ORTHO05D009416 2.8e-36 156.0 131 61.1
PSO832G2794 Papaver somniferum HOM05D007479 ORTHO05D009416 2.8e-36 156.0 131 61.1
Peaxi162Scf01039g00126 Petunia axillaris HOM05D007479 ORTHO05D009416 8.3e-36 154.5 107 65.4
Psat3g024840 Pisum sativum HOM05D007479 ORTHO05D009416 8.3e-36 154.5 103 68.9
SalBow6G0786 Salvia bowleyana HOM05D007479 ORTHO05D009416 1.4e-35 153.7 109 67.9
unitig_21.g20281 Utricularia gibba HOM05D007479 ORTHO05D009416 4.1e-35 152.1 110 65.5
ATR0706G261 Amborella trichopoda HOM05D001702 ORTHO05D001791 5.3e-35 151.8 103 67.0
Os12g0534100 Oryza sativa ssp. japonica HOM05D007479 ORTHO05D009416 2.0e-34 149.8 106 65.1
Hma1.2p1_0209F.1_g089110 Hydrangea macrophylla HOM05D007479 ORTHO05D009416 1.7e-33 146.7 86 81.4
Lj2P1185T15 Lonicera japonica HOM05D007479 ORTHO05D009416 2.9e-33 146.0 86 77.9
AUR62034613 Chenopodium quinoa HOM05D007479 ORTHO05D009416 5.0e-33 145.2 98 71.4
vmacro02508 Vaccinium macrocarpon HOM05D007479 ORTHO05D009416 1.2e-31 140.6 88 72.7
SalBow8G4180 Salvia bowleyana HOM05D007479 ORTHO05D009416 3.4e-29 132.5 87 72.4
AagrBONN_evm.TU.Sc2ySwM_368.764 Anthoceros agrestis HOM05D007479 ORTHO05D009416 9.8e-29 131.0 116 52.6
Mapoly0029s0155 Marchantia polymorpha HOM05D007479 ORTHO05D009416 1.2e-26 124.0 112 50.9
Mapoly0275s0001 Marchantia polymorpha HOM05D007479 ORTHO05D009416 1.2e-26 124.0 112 50.9
CBR_g22325 Chara braunii HOM05D007479 ORTHO05D009416 1.0e-25 120.9 122 49.2
Pp3c5_13320 Physcomitrium patens HOM05D007479 ORTHO05D009416 1.3e-25 120.6 106 52.8
Dinv32992 Davidia involucrata HOM05D007479 ORTHO05D009416 3.2e-11 72.8 37 83.8


User provided reference genes

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