Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 2.3e-113 412.1 199 100.0
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 7.1e-110 400.6 199 96.5
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 9.6e-107 390.2 199 91.5
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 6.2e-106 387.5 199 92.0
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 6.2e-106 387.5 199 92.0
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 2.0e-104 382.5 199 91.5
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 2.9e-103 378.6 199 88.4
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 9.3e-102 373.6 200 89.0
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 4.6e-101 371.3 200 88.5
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 1.7e-100 369.4 199 85.4
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 1.7e-100 369.4 199 85.9
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 5.1e-100 367.9 199 85.9
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 6.6e-100 367.5 199 85.4
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 5.6e-99 364.4 199 84.9
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 9.6e-99 363.6 199 84.9
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 4.8e-98 361.3 200 85.0
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 6.2e-90 334.3 199 81.9
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 3.1e-89 332.0 160 93.8
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 3.3e-83 312.0 193 77.2
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 1.1e-78 297.0 191 72.8
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 1.1e-78 297.0 192 72.9
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 9.3e-78 293.9 190 72.6
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 1.6e-77 293.1 188 72.9
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 4.6e-77 291.6 191 70.2
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 1.0e-76 290.4 187 71.7
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 2.3e-76 289.3 166 80.1
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 1.5e-75 286.6 192 71.4
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 1.5e-75 286.6 177 74.6
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 1.9e-75 286.2 180 75.6
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 1.9e-75 286.2 192 69.3
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 1.9e-75 286.2 184 73.4
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 4.3e-75 285.0 187 72.7
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 5.7e-75 284.6 213 65.3
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 9.6e-75 283.9 186 74.2
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 9.6e-75 283.9 197 70.1
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 9.6e-75 283.9 186 72.0
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 1.3e-74 283.5 192 69.3
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 1.6e-74 283.1 182 72.5
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.6e-74 283.1 188 70.2
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 2.1e-74 282.7 180 71.7
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 2.1e-74 282.7 185 71.9
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 2.8e-74 282.3 187 70.1
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 2.8e-74 282.3 183 71.6
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 8.2e-74 280.8 168 75.6
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 1.1e-73 280.4 186 71.5
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 1.4e-73 280.0 180 71.7
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 1.4e-73 280.0 188 69.7
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 1.4e-73 280.0 161 80.1
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 4.1e-73 278.5 176 72.2
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 4.1e-73 278.5 187 68.4
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 5.3e-73 278.1 182 72.5
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 1.5e-72 276.6 182 72.5
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 1.5e-72 276.6 186 69.9
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 2.6e-72 275.8 180 70.6
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 2.6e-72 275.8 160 77.5
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 3.4e-72 275.4 184 71.7
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 3.4e-72 275.4 166 74.1
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 4.5e-72 275.0 187 69.5
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 4.5e-72 275.0 187 69.5
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 7.6e-72 274.2 193 70.5
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 1.0e-71 273.9 185 71.9
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 1.0e-71 273.9 193 67.4
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 1.3e-71 273.5 197 68.0
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 1.7e-71 273.1 187 68.4
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 2.2e-71 272.7 191 67.0
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 3.8e-71 271.9 191 69.1
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 3.8e-71 271.9 161 75.8
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 5.0e-71 271.6 186 68.3
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 5.0e-71 271.6 175 70.3
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 5.0e-71 271.6 161 77.0
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 6.5e-71 271.2 189 66.1
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 6.5e-71 271.2 188 70.2
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 1.9e-70 269.6 165 75.2
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 2.5e-70 269.2 165 74.5
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 3.2e-70 268.9 189 64.6
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 3.2e-70 268.9 189 66.1
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 4.2e-70 268.5 162 75.3
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 5.5e-70 268.1 190 65.8
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 2.1e-69 266.2 183 67.2
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 4.6e-69 265.0 185 65.4
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 4.6e-69 265.0 189 65.6
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 4.6e-69 265.0 163 73.6
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 7.9e-69 264.2 197 60.9
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 1.0e-68 263.8 187 67.9
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 1.0e-68 263.8 195 66.2
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 1.3e-68 263.5 190 67.9
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 3.9e-68 261.9 170 69.4
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 8.7e-68 260.8 190 66.3
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 1.5e-67 260.0 187 67.4
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 7.4e-67 257.7 164 73.8
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 4.5e-64 248.4 232 54.3
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 2.2e-63 246.1 189 62.4
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 7.2e-62 241.1 193 59.1
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 1.6e-61 240.0 189 59.3
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 3.6e-61 238.8 244 51.6
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 1.5e-59 233.4 165 63.6
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 2.0e-59 233.0 159 67.3
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 3.3e-59 232.3 200 56.0
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 8.2e-58 227.6 140 73.6
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 1.1e-57 227.3 146 73.3
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 1.4e-57 226.9 157 68.2
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 1.4e-57 226.9 163 63.2
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 1.8e-57 226.5 171 62.6
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 2.4e-57 226.1 158 65.8
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 2.0e-56 223.0 172 63.4
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 2.0e-56 223.0 151 63.6
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 2.9e-55 219.2 268 47.4
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 2.5e-54 216.1 157 66.2
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 9.4e-54 214.2 149 69.8
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 1.8e-52 209.9 193 52.3
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 5.9e-48 194.9 169 56.8
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 2.2e-47 193.0 177 54.2
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 5.0e-47 191.8 150 58.0
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 8.5e-47 191.0 150 62.7
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 1.1e-46 190.7 121 71.9
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 6.1e-45 184.9 130 66.2
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 1.8e-44 183.3 130 65.4
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 4.4e-43 178.7 121 66.1
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 3.7e-42 175.6 107 73.8
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 4.5e-40 168.7 119 68.1
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 1.3e-39 167.2 132 60.6
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 1.7e-39 166.8 131 61.8
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 8.0e-37 157.9 151 51.0
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 1.0e-36 157.5 154 50.0
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 2.6e-35 152.9 112 59.8
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 1.4e-33 147.1 91 71.4
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 1.8e-33 146.7 130 52.3
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 3.1e-33 146.0 97 70.1
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 1.6e-32 143.7 80 80.0
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.7e-31 140.2 224 37.1
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 1.2e-29 134.0 88 64.8
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 5.4e-25 118.6 83 63.9
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 1.2e-24 117.5 185 42.2
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 8.0e-21 104.8 98 55.1
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 1.4e-20 104.0 179 37.4
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 8.3e-10 68.2 44 72.7


User provided reference genes

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