Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.8e-214 747.3 375 100.0
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-173 613.2 420 77.9
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 6.8e-138 494.6 428 65.9
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.8e-90 337.0 429 48.5
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.7e-86 323.2 388 50.8
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 7.4e-84 315.1 431 45.2
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.1e-82 309.7 431 45.5
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.6e-81 306.6 450 44.9
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 2.9e-80 303.1 428 46.3
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 7.1e-79 298.5 430 44.9
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 2.1e-78 297.0 430 44.9
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 3.0e-77 293.1 428 45.3
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 8.7e-77 291.6 410 44.9
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.3e-76 289.7 427 43.6
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 2.8e-75 286.6 429 44.8
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 8.2e-75 285.0 424 44.1
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.4e-74 284.3 407 44.7
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 9.0e-74 281.6 454 42.1
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 7.6e-73 278.5 406 44.8
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 3.8e-72 276.2 428 43.5
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 1.4e-71 274.2 421 43.0
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.2e-71 273.1 405 42.7
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.3e-69 266.9 387 45.2
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 1.5e-68 264.2 396 44.2
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.9e-68 263.8 399 44.4
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.3e-68 262.7 373 44.5
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 2.2e-67 260.4 412 43.7
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.8e-67 259.2 410 42.0
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 6.3e-67 258.8 411 42.6
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 6.3e-67 258.8 391 42.5
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 1.4e-66 257.7 415 42.4
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 1.4e-66 257.7 412 43.2
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 9.0e-66 255.0 356 43.5
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 2.0e-65 253.8 407 40.3
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 5.9e-65 252.3 391 41.2
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 5.9e-65 252.3 391 41.9
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 7.7e-65 251.9 416 40.6
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 2.5e-63 246.9 444 41.2
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 2.5e-60 236.9 386 39.9
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 1.8e-53 214.2 349 42.1
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 6.5e-48 195.7 458 33.2
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 9.4e-47 191.8 434 34.6
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.6e-46 191.0 359 39.0
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 5.2e-45 186.0 420 34.3
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 6.7e-45 185.7 398 34.4
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.1e-44 184.9 273 41.8
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 4.4e-44 183.0 373 36.2
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.7e-44 182.6 398 34.2
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 7.4e-44 182.2 398 33.9
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.7e-43 181.0 402 33.3
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 2.2e-43 180.6 393 34.6
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 2.8e-43 180.3 425 32.5
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 3.7e-43 179.9 420 33.3
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 3.7e-43 179.9 461 31.2
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 4.8e-43 179.5 402 33.3
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.4e-42 177.9 412 33.7
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 1.4e-42 177.9 393 33.3
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 1.4e-42 177.9 393 33.1
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.8e-42 177.6 397 33.8
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 1.8e-42 177.6 393 33.6
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.8e-42 177.6 393 33.6
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.8e-42 177.6 393 33.6
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.4e-42 177.2 384 33.9
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 2.4e-42 177.2 391 33.8
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 3.1e-42 176.8 454 30.6
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 3.1e-42 176.8 395 32.9
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 5.3e-42 176.0 351 36.5
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.3e-42 176.0 416 33.9
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 7.0e-42 175.6 456 32.0
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 9.1e-42 175.3 423 32.2
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 9.1e-42 175.3 390 32.6
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 9.1e-42 175.3 416 32.9
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.2e-41 174.9 387 33.3
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 1.2e-41 174.9 399 32.3
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.6e-41 174.5 416 33.4
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 1.6e-41 174.5 453 30.2
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.0e-41 174.1 393 33.3
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 2.6e-41 173.7 427 32.6
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 4.5e-41 172.9 418 33.3
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 4.5e-41 172.9 414 33.6
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 4.5e-41 172.9 442 32.1
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 4.5e-41 172.9 412 33.0
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 4.5e-41 172.9 415 33.0
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.9e-41 172.6 391 34.0
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 5.9e-41 172.6 391 34.0
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 7.7e-41 172.2 430 32.3
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 1.0e-40 171.8 372 34.1
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 3.8e-40 169.9 387 33.6
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 5.0e-40 169.5 360 32.5
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 5.0e-40 169.5 165 56.4
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 5.0e-40 169.5 389 30.8
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 6.5e-40 169.1 453 30.0
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 8.5e-40 168.7 435 30.6
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 8.5e-40 168.7 389 31.1
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 1.1e-39 168.3 334 36.2
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.5e-39 167.9 389 33.7
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.5e-39 167.2 415 32.8
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 2.5e-39 167.2 452 30.8
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 3.2e-39 166.8 423 31.9
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 4.2e-39 166.4 400 32.2
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 4.2e-39 166.4 390 31.8
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 5.5e-39 166.0 424 31.1
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.6e-38 164.5 437 30.9
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.6e-38 164.5 464 28.9
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 1.6e-38 164.5 417 32.6
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 3.6e-38 163.3 403 31.0
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 8.0e-38 162.2 391 32.2
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.8e-37 161.0 408 30.4
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 1.8e-37 161.0 373 31.9
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 2.3e-37 160.6 418 31.6
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 2.3e-37 160.6 390 32.1
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 4.0e-37 159.8 404 32.2
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 8.8e-37 158.7 450 30.0
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.5e-36 157.9 383 31.1
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 2.6e-36 157.1 453 28.7
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 3.4e-36 156.8 390 31.0
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 9.8e-36 155.2 407 29.5
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.3e-35 154.8 417 31.4
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.8e-35 153.7 233 45.5
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.0e-32 145.2 254 38.2
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 5.0e-32 142.9 497 27.8
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 2.5e-31 140.6 354 31.9
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 1.6e-30 137.9 132 59.8
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 4.7e-30 136.3 413 28.6
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 1.8e-29 134.4 336 35.1
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 4.0e-29 133.3 351 32.5
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 1.5e-28 131.3 287 35.2
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 5.7e-28 129.4 141 51.1
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 4.9e-27 126.3 288 34.7
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 8.3e-27 125.6 141 49.6
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 8.3e-27 125.6 150 50.7
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 1.4e-26 124.8 323 29.7
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 5.4e-26 122.9 212 38.2
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 2.0e-25 120.9 351 29.1
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 1.9e-23 114.4 197 42.6
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.1e-22 110.9 255 32.5
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-20 105.1 361 28.8
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.8e-18 97.8 328 31.4
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 9.2e-18 95.5 159 43.4
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 9.2e-18 95.5 333 25.2
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 2.0e-17 94.4 147 37.4
AL6G50230 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.3e-16 90.9 48 89.6
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.9e-16 90.5 110 46.4
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.9e-16 90.1 136 41.9
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 6.6e-16 89.4 131 39.7
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 1.5e-15 88.2 101 45.5
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 4.3e-15 86.7 117 42.7
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 4.3e-15 86.7 75 66.7
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 4.7e-14 83.2 363 23.4
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 6.8e-13 79.3 108 37.0
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.0e-12 77.8 108 37.0
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 4.4e-12 76.6 137 32.1
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 7.5e-12 75.9 181 28.7
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 6.4e-11 72.8 281 26.0
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 8.3e-11 72.4 105 33.3
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 2.4e-10 70.9 73 47.9
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.2e-09 68.6 119 39.5
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 1.6e-09 68.2 121 33.9
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 2.0e-09 67.8 91 39.6
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 6.6e-08 62.8 282 25.9
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.9e-07 61.2 56 51.8
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 5.6e-07 59.7 58 50.0
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 7.3e-07 59.3 66 43.9
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 1.6e-06 58.2 78 39.7
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.1e-06 57.8 61 49.2
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 4.7e-06 56.6 59 44.1


User provided reference genes

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