Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 7.8e-112 407.1 206 100.0
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 9.3e-105 383.6 206 94.7
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 8.7e-103 377.1 206 94.7
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 2.3e-95 352.4 207 87.4
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 6.2e-93 344.4 206 87.4
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 7.6e-91 337.4 206 85.9
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 2.0e-83 312.8 210 80.0
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 3.1e-76 288.9 208 77.9
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 1.2e-72 276.9 208 76.9
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 7.7e-59 231.1 205 67.3
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 5.0e-58 228.4 205 66.8
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 3.0e-55 219.2 196 66.8
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 2.0e-54 216.5 213 60.1
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 5.7e-54 214.9 210 64.3
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 5.7e-54 214.9 210 64.3
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 7.4e-54 214.5 207 64.3
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 1.1e-52 210.7 214 59.3
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 5.0e-50 201.8 207 62.8
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 3.2e-49 199.1 207 62.3
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 2.0e-43 179.9 197 59.4
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 3.5e-43 179.1 214 51.4
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 1.0e-42 177.6 197 58.9
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 1.0e-42 177.6 210 51.9
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.7e-40 169.5 206 51.5
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 3.6e-40 169.1 227 48.9
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.0e-39 166.0 206 51.0
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 6.8e-39 164.9 206 50.5
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 2.6e-38 162.9 211 50.2
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 2.6e-38 162.9 218 46.3
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 3.4e-38 162.5 215 48.4
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 9.8e-38 161.0 213 47.9
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 9.8e-38 161.0 206 50.5
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 1.7e-37 160.2 213 46.9
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.7e-37 160.2 218 49.1
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 2.8e-37 159.5 206 49.5
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 8.3e-37 157.9 210 47.1
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 1.1e-36 157.5 210 48.1
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 1.1e-36 157.5 217 46.5
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.8e-36 156.8 219 46.1
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.4e-36 156.4 214 48.1
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 4.1e-36 155.6 214 49.5
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 5.4e-36 155.2 206 46.6
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 5.4e-36 155.2 214 45.8
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 7.0e-36 154.8 221 46.2
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 7.0e-36 154.8 219 45.7
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 9.1e-36 154.5 215 44.2
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 9.1e-36 154.5 217 45.2
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 1.2e-35 154.1 213 43.7
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 1.2e-35 154.1 208 45.7
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.2e-35 154.1 214 47.7
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 1.2e-35 154.1 216 45.4
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 2.0e-35 153.3 214 48.6
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 2.0e-35 153.3 213 45.1
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 2.0e-35 153.3 211 45.0
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 7.7e-35 151.4 210 44.8
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 7.7e-35 151.4 206 47.1
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.3e-34 150.6 212 45.3
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 2.9e-34 149.4 213 45.5
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 3.8e-34 149.1 219 46.6
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 3.8e-34 149.1 228 44.3
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.0e-34 148.7 205 47.3
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 5.0e-34 148.7 216 46.8
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 8.6e-34 147.9 206 45.1
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 1.1e-33 147.5 222 43.7
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 1.1e-33 147.5 213 46.9
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.1e-33 147.5 206 45.6
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.9e-33 146.7 206 47.1
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.9e-33 146.7 212 47.2
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 4.2e-33 145.6 212 46.2
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 9.5e-33 144.4 207 44.0
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 9.5e-33 144.4 207 45.9
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.6e-32 143.7 206 46.6
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 2.8e-32 142.9 227 44.1
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 3.6e-32 142.5 213 45.5
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 4.7e-32 142.1 216 43.5
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 4.7e-32 142.1 208 43.8
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 4.7e-32 142.1 220 43.2
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 6.1e-32 141.7 211 44.1
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 6.1e-32 141.7 217 45.6
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.4e-31 140.6 218 42.7
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.8e-31 140.2 208 45.7
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 2.3e-31 139.8 218 43.6
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 3.0e-31 139.4 211 46.4
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 3.0e-31 139.4 213 45.1
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.0e-31 139.0 207 45.4
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 4.0e-31 139.0 214 45.8
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 5.2e-31 138.7 213 46.0
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 1.2e-30 137.5 216 43.5
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.5e-30 137.1 212 46.2
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 2.6e-30 136.3 214 42.5
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 2.6e-30 136.3 226 43.8
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 5.7e-30 135.2 207 43.5
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 9.8e-30 134.4 87 83.9
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 9.8e-30 134.4 186 45.7
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 9.8e-30 134.4 212 44.3
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 9.8e-30 134.4 204 44.1
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 9.8e-30 134.4 222 44.6
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 9.8e-30 134.4 224 42.9
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 9.8e-30 134.4 212 44.8
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 1.3e-29 134.0 216 44.0
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 1.3e-29 134.0 208 45.2
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 1.7e-29 133.7 216 40.7
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 2.8e-29 132.9 216 43.1
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 4.9e-29 132.1 211 41.7
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 4.9e-29 132.1 204 42.2
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 6.3e-29 131.7 208 43.3
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 8.3e-29 131.3 212 42.0
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 8.3e-29 131.3 204 43.6
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 1.1e-28 131.0 210 43.3
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 2.4e-28 129.8 209 42.6
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 4.1e-28 129.0 200 43.0
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 5.4e-28 128.6 216 43.1
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 5.4e-28 128.6 207 41.5
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 5.4e-28 128.6 224 40.6
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 7.0e-28 128.3 210 42.4
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 7.0e-28 128.3 210 42.4
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 1.2e-27 127.5 239 38.5
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 1.2e-27 127.5 204 40.7
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.0e-27 126.7 182 42.3
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 2.7e-27 126.3 205 41.0
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 2.7e-27 126.3 221 42.1
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 2.7e-27 126.3 215 40.9
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 4.5e-27 125.6 191 46.6
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 7.8e-27 124.8 206 41.7
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.0e-26 124.4 218 41.7
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.7e-26 123.6 227 41.9
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 2.9e-26 122.9 217 41.0
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 1.5e-25 120.6 206 40.3
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.9e-25 120.2 175 46.3
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 2.5e-25 119.8 230 40.4
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 3.3e-25 119.4 223 39.5
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 3.3e-25 119.4 221 39.8
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 4.3e-25 119.0 212 43.4
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 4.3e-25 119.0 220 39.1
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 5.6e-25 118.6 198 42.9
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 2.8e-24 116.3 221 37.1
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 3.6e-24 115.9 205 39.0
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 6.1e-24 115.2 206 39.8
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 6.1e-24 115.2 202 41.6
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 1.4e-23 114.0 75 80.0
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.4e-23 114.0 221 37.6
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 5.2e-23 112.1 207 38.6
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 6.8e-23 111.7 227 40.5
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.2e-22 110.9 210 38.1
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 7.5e-22 108.2 58 86.2
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 4.9e-21 105.5 207 36.7
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 6.4e-21 105.1 226 38.9
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 4.6e-19 99.0 213 36.6
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 6.0e-19 98.6 211 38.4
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 3.0e-18 96.3 208 37.0
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 3.9e-18 95.9 277 31.0
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 8.6e-18 94.7 160 41.2
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 9.5e-17 91.3 86 57.0
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 2.8e-16 89.7 214 36.0
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 3.1e-15 86.3 174 36.8
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 4.0e-15 85.9 186 39.2
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.4e-14 82.8 128 46.9
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 3.4e-14 82.8 163 38.7
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 6.4e-13 78.6 93 45.2
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 2.0e-11 73.6 181 34.3
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 1.9e-09 67.0 60 53.3
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 4.3e-09 65.9 80 45.0
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 9.5e-09 64.7 78 50.0
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 1.1e-07 61.2 120 36.7
BraA03t12266Z Brassica rapa HOM05D044247 ORTHO05D042649 3.1e-07 59.7 43 83.7


User provided reference genes

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