Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 7.6e-197 690.3 337 100.0
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 8.7e-177 623.6 338 91.1
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 4.8e-175 617.8 337 89.6
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 3.2e-171 605.1 341 85.6
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 6.5e-156 554.3 343 83.4
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 2.5e-155 552.4 373 76.7
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 3.1e-150 535.4 343 79.9
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 7.9e-146 520.8 407 66.8
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 1.4e-142 510.0 422 63.5
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 4.1e-142 508.4 423 64.1
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 2.0e-141 506.1 422 63.5
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 4.5e-141 505.0 406 65.8
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 2.0e-136 489.6 344 69.8
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 5.0e-124 448.4 341 63.0
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 1.1e-123 447.2 344 64.0
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 3.2e-123 445.7 347 62.5
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 3.2e-123 445.7 351 65.0
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 1.6e-122 443.4 341 63.9
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 2.1e-122 443.0 348 62.6
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 2.7e-122 442.6 361 61.8
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 4.0e-121 438.7 351 62.7
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 5.2e-121 438.3 351 62.7
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 1.5e-120 436.8 354 62.1
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 4.4e-120 435.3 336 61.3
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 4.4e-120 435.3 347 62.2
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 7.5e-120 434.5 347 61.1
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 7.5e-120 434.5 351 62.4
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 9.8e-120 434.1 342 63.2
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 1.3e-119 433.7 355 60.8
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 3.7e-119 432.2 358 59.8
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 6.3e-119 431.4 347 62.8
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 8.3e-119 431.0 339 61.7
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 8.3e-119 431.0 347 62.5
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 1.1e-118 430.6 346 59.8
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 2.4e-118 429.5 350 60.6
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 3.1e-118 429.1 351 61.3
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 5.4e-118 428.3 352 62.2
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 2.0e-117 426.4 347 61.1
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 2.0e-117 426.4 342 61.4
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 2.7e-117 426.0 350 61.4
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 3.5e-117 425.6 353 60.1
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 1.0e-116 424.1 349 60.7
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 2.9e-116 422.5 363 57.9
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 8.6e-116 421.0 345 60.6
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 2.5e-115 419.5 363 57.6
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 2.5e-115 419.5 341 60.4
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 3.3e-115 419.1 343 59.8
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 4.2e-115 418.7 350 60.0
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 5.6e-115 418.3 345 60.0
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 7.2e-115 417.9 337 61.4
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 2.8e-114 416.0 342 58.8
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 2.8e-114 416.0 345 61.4
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 6.1e-114 414.8 350 58.3
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 1.8e-113 413.3 350 58.9
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 2.3e-113 412.9 328 62.8
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 3.0e-113 412.5 347 59.1
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 3.0e-113 412.5 341 59.8
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 4.0e-113 412.1 347 59.1
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 3.4e-112 409.1 357 59.1
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 3.4e-112 409.1 356 56.7
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 4.4e-112 408.7 352 58.5
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 7.5e-112 407.9 351 58.7
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 7.5e-112 407.9 341 58.9
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 9.8e-112 407.5 345 58.8
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 9.8e-112 407.5 343 58.6
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 1.3e-111 407.1 340 60.0
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 2.2e-111 406.4 341 58.4
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 3.7e-111 405.6 344 59.0
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 4.9e-111 405.2 351 59.8
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 8.3e-111 404.4 256 78.9
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 1.1e-110 404.1 341 59.5
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 4.1e-110 402.1 345 58.0
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 1.2e-109 400.6 348 58.6
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 2.0e-109 399.8 341 57.8
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 6.6e-108 394.8 362 55.0
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 1.1e-107 394.0 342 57.6
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 1.9e-107 393.3 343 57.7
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 4.3e-107 392.1 355 57.5
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 1.6e-106 390.2 338 57.1
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 3.6e-106 389.0 354 55.6
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 1.4e-105 387.1 354 56.8
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.1e-105 386.0 334 56.9
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 8.9e-105 384.4 338 56.8
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 1.9e-102 376.7 336 55.1
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 1.6e-101 373.6 378 52.9
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 3.5e-101 372.5 377 52.8
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 2.3e-100 369.8 336 56.5
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 7.3e-99 364.8 326 58.6
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 4.7e-98 362.1 337 54.6
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 3.1e-97 359.4 341 52.8
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 2.6e-96 356.3 313 59.1
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 9.8e-96 354.4 346 53.2
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 6.4e-95 351.7 291 60.8
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 6.4e-95 351.7 337 52.5
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 8.3e-95 351.3 335 53.7
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 2.1e-93 346.7 435 44.8
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 3.5e-93 345.9 335 52.5
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 2.3e-92 343.2 342 52.6
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 8.6e-92 341.3 312 56.4
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 2.8e-90 336.3 287 57.8
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 1.4e-89 334.0 336 50.9
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 6.8e-89 331.6 307 55.4
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 1.3e-87 327.4 341 49.9
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 7.1e-86 321.6 333 48.6
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 1.6e-82 310.5 332 46.7
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 1.4e-81 307.4 336 49.1
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 1.8e-81 307.0 336 46.1
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 1.8e-81 307.0 336 46.1
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 1.5e-80 303.9 342 46.5
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 4.4e-80 302.4 257 60.7
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 1.3e-74 284.3 338 44.1
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 2.8e-74 283.1 503 35.2
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 3.6e-74 282.7 371 42.9
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 9.0e-73 278.1 345 43.5
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 2.6e-72 276.6 387 39.8
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 9.9e-72 274.6 432 37.5
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 7.1e-70 268.5 406 40.1
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 6.0e-69 265.4 166 74.1
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 5.1e-68 262.3 332 42.5
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 2.5e-67 260.0 332 41.9
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 9.6e-67 258.1 335 41.2
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 5.3e-65 252.3 341 42.8
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 6.9e-65 251.9 337 41.5
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 1.5e-64 250.8 341 42.5
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 5.5e-62 242.3 430 35.3
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 9.0e-57 224.9 330 37.3
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 4.8e-50 202.6 433 32.1
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 5.0e-47 192.6 233 46.4
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 3.7e-42 176.4 221 44.8
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 9.0e-41 171.8 189 46.6
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 9.0e-41 171.8 99 75.8
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 3.0e-28 130.2 175 42.3
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 5.5e-22 109.4 264 28.0
MD05G1102200 Malus domestica HOM05D005645 ORTHO05D007156 8.0e-21 105.5 133 45.9
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 1.8e-20 104.4 163 41.7
FAN07G2129 Fragaria x ananassa HOM05D005645 ORTHO05D046604 1.2e-08 65.1 69 44.9
FAN15G0862 Fragaria x ananassa HOM05D005645 ORTHO05D046604 1.6e-08 64.7 60 51.7
SMO356G0542 Selaginella moellendorffii HOM05D002394 ORTHO05D002508 2.2e-07 60.8 133 30.8
arahy.Tifrunner.gnm1.ann1.56XWA4 Arachis hypogaea HOM05D002394 ORTHO05D002508 5.0e-07 59.7 123 33.3
Zm00001eb020350 Zea mays HOM05D002394 ORTHO05D002508 5.0e-07 59.7 125 32.8
SEGI_32380 Sequoiadendron giganteum HOM05D002394 ORTHO05D002508 1.5e-06 58.2 140 28.6
Lalb_Chr06g0175081 Lupinus albus HOM05D002394 ORTHO05D002508 1.9e-06 57.8 124 31.5
Glyma.18G264200 Glycine max HOM05D002394 ORTHO05D002508 3.2e-06 57.0 127 33.1
VMungo1383G0104 Vigna mungo HOM05D002394 ORTHO05D002508 4.2e-06 56.6 335 22.7
Aa31LG11G14140 Aethionema arabicum HOM05D002394 ORTHO05D002508 5.5e-06 56.2 124 32.3
Aqoxy3G00464 Aquilegia oxysepala HOM05D002394 ORTHO05D002508 5.5e-06 56.2 123 30.9
CiPaw.07G094400 Carya illinoinensis HOM05D002394 ORTHO05D002508 5.5e-06 56.2 140 27.1
PSO017G0834 Papaver somniferum HOM05D002394 ORTHO05D002508 5.5e-06 56.2 119 30.3
PSO478G3218 Papaver somniferum HOM05D002394 ORTHO05D002508 5.5e-06 56.2 119 30.3
SEGI_33966 Sequoiadendron giganteum HOM05D002394 ORTHO05D002508 5.5e-06 56.2 119 28.6
THA.LOC104822342 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 5.5e-06 56.2 125 32.0
AT5G15440 Arabidopsis thaliana HOM05D002394 ORTHO05D002508 7.2e-06 55.8 125 31.2
arahy.Tifrunner.gnm1.ann1.GVJS70 Arachis hypogaea HOM05D002394 ORTHO05D002508 7.2e-06 55.8 119 30.3
Carub.0006s1360 Capsella rubella HOM05D002394 ORTHO05D002508 7.2e-06 55.8 125 31.2
CARHR197880 Cardamine hirsuta HOM05D002394 ORTHO05D002508 7.2e-06 55.8 125 31.2
Migut.K01292 Erythranthe guttata HOM05D002394 ORTHO05D002508 7.2e-06 55.8 123 31.7
Psat3g200840 Pisum sativum HOM05D002394 ORTHO05D002508 7.2e-06 55.8 123 30.1
QL12p022505 Quercus lobata HOM05D002394 ORTHO05D002508 7.2e-06 55.8 141 27.0
AL6G26290 Arabidopsis lyrata HOM05D002394 ORTHO05D002508 9.5e-06 55.5 125 31.2
EL10Ac2g03083 Beta vulgaris HOM05D002394 ORTHO05D002508 9.5e-06 55.5 123 29.3
Sp6g28660 Schrenkiella parvula HOM05D002394 ORTHO05D002508 9.5e-06 55.5 125 31.2
Sc10g0003270 Simmondsia chinensis HOM05D002394 ORTHO05D002508 9.5e-06 55.5 123 29.3
Solyc06g084320.1 Solanum lycopersicum HOM05D002394 ORTHO05D002508 9.5e-06 55.5 138 27.5
Sopen06g035710 Solanum pennellii HOM05D002394 ORTHO05D002508 9.5e-06 55.5 138 27.5


User provided reference genes

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