Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G02425 Arabidopsis thaliana HOM05D002674 ORTHO05D007700 1.5e-144 516.2 263 100.0
Carub.0006s3472 Capsella rubella HOM05D002674 ORTHO05D007700 8.4e-135 483.8 263 94.7
CARHR250690 Cardamine hirsuta HOM05D002674 ORTHO05D007700 1.2e-128 463.4 275 90.2
Sp6g02330 Schrenkiella parvula HOM05D002674 ORTHO05D007700 6.5e-119 431.0 265 87.5
Thhalv10028893m.g Eutrema salsugineum HOM05D002674 ORTHO05D007700 9.0e-113 410.6 265 84.2
AL6G50650 Arabidopsis lyrata HOM05D002674 ORTHO05D007700 5.5e-110 401.4 224 94.2
C02p38980 Brassica napus HOM05D002674 ORTHO05D007700 3.6e-109 398.7 265 83.0
BolC2t09909H Brassica oleracea HOM05D002674 ORTHO05D007700 1.8e-108 396.4 265 82.6
A02p24720 Brassica napus HOM05D002674 ORTHO05D007700 2.3e-108 396.0 264 83.0
BcaC03g16124 Brassica carinata HOM05D002674 ORTHO05D007700 6.7e-108 394.4 265 82.3
BraA02t07459Z Brassica rapa HOM05D002674 ORTHO05D007700 5.7e-107 391.3 265 81.9
BcaB05g23628 Brassica carinata HOM05D002674 ORTHO05D007700 5.7e-83 311.6 216 81.5
Aa31LG1G9740 Aethionema arabicum HOM05D002674 ORTHO05D007700 9.1e-81 304.3 271 66.4
THA.LOC104815928 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 9.1e-81 304.3 277 66.8
Carub.0001s0195 Capsella rubella HOM05D002674 ORTHO05D007700 5.9e-80 301.6 268 67.9
THA.LOC104825970 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 5.9e-80 301.6 285 64.6
Thecc.01G299900 Theobroma cacao HOM05D002674 ORTHO05D007700 1.5e-75 287.0 279 64.5
COL.COLO4_23350 Corchorus olitorius HOM05D002674 ORTHO05D007700 1.4e-73 280.4 278 62.9
Atru.chr5.1151 Acer truncatum HOM05D002674 ORTHO05D007700 1.3e-71 273.9 270 62.2
Duzib138G1545 Durio zibethinus HOM05D002674 ORTHO05D007700 6.5e-71 271.6 280 62.1
Prupe.8G261000 Prunus persica HOM05D002674 ORTHO05D007700 1.9e-70 270.0 289 59.5
Gohir.D08G085300 Gossypium hirsutum HOM05D002674 ORTHO05D007700 5.5e-70 268.5 279 59.9
MD03G1287800 Malus domestica HOM05D002674 ORTHO05D007700 5.5e-70 268.5 289 59.9
Gorai.004G089800 Gossypium raimondii HOM05D002674 ORTHO05D007700 9.5e-70 267.7 277 59.9
Gohir.A08G075900 Gossypium hirsutum HOM05D002674 ORTHO05D007700 6.1e-69 265.0 276 59.1
MD11G1310500 Malus domestica HOM05D002674 ORTHO05D007700 1.8e-68 263.5 286 60.5
ClCG10G010900 Citrullus lanatus HOM05D002674 ORTHO05D007700 4.0e-68 262.3 279 58.8
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 1.2e-67 260.8 280 60.7
FAN27G2781 Fragaria x ananassa HOM05D002674 ORTHO05D007700 1.7e-66 256.9 280 59.3
Ciclev10021537m.g Citrus clementina HOM05D002674 ORTHO05D007700 2.2e-66 256.5 277 59.6
CANSAT25G1821 Cannabis sativa HOM05D002674 ORTHO05D007700 8.3e-66 254.6 287 57.5
MELO3C017958.2 Cucumis melo HOM05D002674 ORTHO05D007700 1.2e-64 250.8 279 56.6
CsaV3_4G000780 Cucumis sativus L. HOM05D002674 ORTHO05D007700 1.2e-64 250.8 279 56.6
TWI23G1032 Tripterygium wilfordii HOM05D002674 ORTHO05D007700 1.3e-63 247.3 276 59.4
Glyma.02G018300 Glycine max HOM05D002674 ORTHO05D007700 5.0e-63 245.4 276 59.1
Lj1A25T5 Lonicera japonica HOM05D002674 ORTHO05D007700 5.0e-63 245.4 281 57.7
QL12p028514 Quercus lobata HOM05D002674 ORTHO05D007700 8.6e-63 244.6 308 55.2
CiPaw.07G108400 Carya illinoinensis HOM05D002674 ORTHO05D007700 4.3e-62 242.3 279 58.8
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 7.3e-62 241.5 289 57.1
TAR365G1234 Trochodendron aralioides HOM05D002674 ORTHO05D007700 1.6e-61 240.4 267 59.6
Actinidia24347 Actinidia chinensis HOM05D002674 ORTHO05D007700 4.7e-61 238.8 269 56.9
Eucgr.K03478 Eucalyptus grandis HOM05D002674 ORTHO05D007700 2.3e-60 236.5 288 55.6
Cfa005916 Carpinus fangiana HOM05D002674 ORTHO05D007700 3.4e-59 232.6 287 55.7
Phvul.007G146100 Phaseolus vulgaris HOM05D002674 ORTHO05D007700 3.4e-59 232.6 274 56.2
Manes.01G218600 Manihot esculenta HOM05D002674 ORTHO05D007700 9.8e-59 231.1 277 55.2
Aa31LG5G2060 Aethionema arabicum HOM05D002674 ORTHO05D007700 1.3e-58 230.7 239 64.4
Glyma.10G018600 Glycine max HOM05D002674 ORTHO05D007700 1.7e-58 230.3 282 54.3
Psat6g166040 Pisum sativum HOM05D002674 ORTHO05D007700 2.2e-58 229.9 271 54.6
Potri.014G129500 Populus trichocarpa HOM05D002674 ORTHO05D007700 2.2e-58 229.9 274 58.8
Sabra14G0096100 Salix brachista HOM05D002674 ORTHO05D007700 2.9e-58 229.6 275 57.5
FAN15G1012 Fragaria x ananassa HOM05D002674 ORTHO05D007700 1.8e-57 226.9 282 55.0
FAN20G3185 Fragaria x ananassa HOM05D002674 ORTHO05D007700 1.8e-57 226.9 282 54.6
FvH4_2g25690 Fragaria vesca HOM05D002674 ORTHO05D007700 5.4e-57 225.3 282 54.6
FAN24G1157 Fragaria x ananassa HOM05D002674 ORTHO05D007700 5.4e-57 225.3 282 54.6
Lj5g0010238 Lotus japonicus HOM05D002674 ORTHO05D007700 5.4e-57 225.3 282 55.3
RcHm_v2.0_Chr6g0293961 Rosa chinensis HOM05D002674 ORTHO05D007700 1.6e-56 223.8 272 54.4
Ca_10339_v3 Cicer arietinum L. HOM05D002674 ORTHO05D007700 4.6e-56 222.2 277 53.1
Aqoxy5G00752 Aquilegia oxysepala HOM05D002674 ORTHO05D007700 7.8e-56 221.5 275 52.0
TAR636G1278 Trochodendron aralioides HOM05D002674 ORTHO05D007700 1.2e-53 214.2 279 54.1
Potri.002G204700 Populus trichocarpa HOM05D002674 ORTHO05D007700 1.6e-53 213.8 276 53.3
Sed0013149 Sechium edule HOM05D002674 ORTHO05D007700 2.8e-53 213.0 264 53.8
Medtr1g088580 Medicago truncatula HOM05D002674 ORTHO05D007700 5.2e-52 208.8 274 50.4
VMungo0720G0138 Vigna mungo HOM05D002674 ORTHO05D007700 1.2e-51 207.6 232 58.2
CSS0049735 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 1.5e-51 207.2 282 51.8
MBI19_g25354_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D007700 1.5e-51 207.2 281 47.7
Sabra02G0154700 Salix brachista HOM05D002674 ORTHO05D008110 9.8e-51 204.5 278 53.2
Cc01_g20810 Coffea canephora HOM05D002674 ORTHO05D007700 3.7e-50 202.6 284 51.4
TPR.G34010 Trifolium pratense HOM05D002674 ORTHO05D007700 8.3e-50 201.4 271 50.2
Rhsim01G0243300 Rhododendron simsii HOM05D002674 ORTHO05D007700 1.1e-49 201.1 296 54.1
CSS0000533 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 7.0e-49 198.4 281 51.6
HanXRQChr10g0284651 Helianthus annuus HOM05D002674 ORTHO05D007700 1.2e-48 197.6 299 47.2
Nitab4.5_0002470g0100 Nicotiana tabacum HOM05D002674 ORTHO05D007700 1.6e-48 197.2 276 52.2
SGA_v2.0_scaffold1G00369 Striga asiatica HOM05D002674 ORTHO05D007700 3.5e-48 196.1 265 54.0
Lsat_1_v5_gn_7_11800 Lactuca sativa HOM05D002674 ORTHO05D007700 1.0e-47 194.5 249 53.8
Lsat_1_v5_gn_9_5620 Lactuca sativa HOM05D002674 ORTHO05D007700 1.0e-47 194.5 249 53.8
EL10Ac7g17509 Beta vulgaris HOM05D002674 ORTHO05D007700 1.6e-45 187.2 310 47.7
Nitab4.5_0005805g0020 Nicotiana tabacum HOM05D002674 ORTHO05D007700 2.1e-45 186.8 277 51.6
Nn3g21481 Nelumbo nucifera HOM05D002674 ORTHO05D007700 3.6e-45 186.0 184 63.0
Hund18157 Selenicereus undatus HOM05D002674 ORTHO05D007700 4.7e-45 185.7 286 47.2
Lalb_Chr06g0163511 Lupinus albus HOM05D002674 ORTHO05D007700 3.1e-44 183.0 270 50.0
Migut.D00215 Erythranthe guttata HOM05D002674 ORTHO05D007700 4.0e-44 182.6 261 53.3
Sc24g0003790 Simmondsia chinensis HOM05D002674 ORTHO05D007700 5.2e-44 182.2 293 48.5
Hma1.2p1_0491F.1_g164500 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 6.8e-44 181.8 203 58.1
HPP92_025205 Vanilla planifolia HOM05D002674 ORTHO05D007700 3.4e-43 179.5 271 50.6
PSO832G4034 Papaver somniferum HOM05D002674 ORTHO05D007700 7.5e-43 178.3 296 47.0
Sopen06g003880 Solanum pennellii HOM05D002674 ORTHO05D007700 2.2e-42 176.8 272 50.0
PGSC0003DMG402017938 Solanum tuberosum HOM05D002674 ORTHO05D007700 2.2e-42 176.8 274 50.4
arahy.Tifrunner.gnm1.ann1.2P60TQ Arachis hypogaea HOM05D002674 ORTHO05D007700 2.9e-42 176.4 249 50.2
Solyc06g009120.3 Solanum lycopersicum HOM05D002674 ORTHO05D007700 3.7e-42 176.0 272 50.0
Ah.15g093240 Amaranthus hybridus HOM05D002674 ORTHO05D007700 1.4e-41 174.1 300 48.0
arahy.Tifrunner.gnm1.ann1.YN8C8B Arachis hypogaea HOM05D002674 ORTHO05D007700 1.9e-41 173.7 254 48.8
vmacro15007 Vaccinium macrocarpon HOM05D002674 ORTHO05D007700 2.4e-41 173.3 241 53.5
CDE11G0633 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 9.2e-41 171.4 258 49.6
DCAR_002828 Daucus carota HOM05D002674 ORTHO05D007700 1.3e-39 167.5 252 49.2
Peaxi162Scf00399g00714 Petunia axillaris HOM05D002674 ORTHO05D007700 1.7e-39 167.2 303 46.5
CDE05G2513 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 3.0e-39 166.4 263 47.9
unitig_22.g5241 Utricularia gibba HOM05D002674 ORTHO05D007700 1.5e-38 164.1 225 54.7
Oeu054122.1 Olea europaea HOM05D002674 ORTHO05D007700 9.5e-38 161.4 171 62.6
Oeu053149.1 Olea europaea HOM05D002674 ORTHO05D007700 1.2e-29 134.4 171 55.6
ATR0796G100 Amborella trichopoda HOM05D002674 ORTHO05D007700 2.1e-29 133.7 274 40.1
AUR62033139 Chenopodium quinoa HOM05D002674 ORTHO05D007700 8.1e-29 131.7 205 49.3
ECA247G3124 Erigeron canadensis HOM05D002674 ORTHO05D007700 8.1e-29 131.7 262 41.6
BolC6t36475H Brassica oleracea HOM05D000186 ORTHO05D015008 9.0e-28 128.3 84 82.1
CAN.G1280.1 Capsicum annuum HOM05D002674 ORTHO05D007700 2.9e-26 123.2 272 41.2
AUR62008632 Chenopodium quinoa HOM05D002674 ORTHO05D007700 4.2e-25 119.4 174 50.6
BcaC03g16430 Brassica carinata HOM05D002674 ORTHO05D007700 1.2e-24 117.9 77 83.1
HPP92_006921 Vanilla planifolia HOM05D002674 ORTHO05D007700 2.1e-24 117.1 231 43.7
SEGI_12569 Sequoiadendron giganteum HOM05D002674 ORTHO05D007700 4.6e-24 115.9 279 38.7
Hma1.2p1_0491F.1_g164510 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 1.0e-23 114.8 108 64.8
BcaB07g32361 Brassica carinata HOM05D002674 ORTHO05D007700 1.8e-20 104.0 79 74.7
C05p48610 Brassica napus HOM05D002674 ORTHO05D007700 3.1e-20 103.2 71 77.5
C08p25960 Brassica napus HOM05D002674 ORTHO05D007700 3.1e-20 103.2 71 77.5
CANSAT56G3445 Cannabis sativa HOM05D002674 ORTHO05D007700 1.5e-19 100.9 90 64.4
Zm00001eb127170 Zea mays HOM05D002674 ORTHO05D007700 2.0e-19 100.5 264 39.0
C02p62500 Brassica napus HOM05D002674 ORTHO05D007700 2.6e-19 100.1 64 82.8
BolC9t55650H Brassica oleracea HOM05D002674 ORTHO05D007700 2.6e-19 100.1 64 82.8
BolC1t01853H Brassica oleracea HOM05D002674 ORTHO05D007700 2.2e-18 97.1 71 74.6
C09p27860 Brassica napus HOM05D002674 ORTHO05D007700 8.4e-18 95.1 64 79.7
Os01g0316500 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D007700 2.7e-16 90.1 175 41.7
Zm00001eb285590 Zea mays HOM05D002674 ORTHO05D007700 6.0e-16 89.0 258 35.7
Zm00001eb018450 Zea mays HOM05D002674 ORTHO05D007700 3.7e-13 79.7 222 39.6
C02p42550 Brassica napus HOM05D000186 ORTHO05D015008 2.4e-12 77.0 39 89.7
BcaB04g18179 Brassica carinata HOM05D002674 ORTHO05D007700 3.1e-12 76.6 39 89.7
C06p13190 Brassica napus HOM05D002674 ORTHO05D015008 9.0e-12 75.1 39 87.2
A08p09760 Brassica napus HOM05D002674 ORTHO05D007700 1.2e-11 74.7 39 87.2
BraA08t32971Z Brassica rapa HOM05D002674 ORTHO05D007700 1.2e-11 74.7 39 87.2
A09p66240 Brassica napus HOM05D002674 ORTHO05D007700 4.5e-11 72.8 38 86.8
BcaB06g28993 Brassica carinata HOM05D002674 ORTHO05D007700 7.6e-11 72.0 40 85.0
BcaB06g27116 Brassica carinata HOM05D002674 ORTHO05D094085 1.2e-08 64.7 79 48.1


User provided reference genes

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