Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G02405 Arabidopsis thaliana HOM05D006737 ORTHO05D008418 1.4e-179 632.9 318 100.0
AL6G50710 Arabidopsis lyrata HOM05D006737 ORTHO05D008418 1.2e-156 556.6 315 91.1
Carub.0006s3475 Capsella rubella HOM05D006737 ORTHO05D008418 2.0e-143 512.7 316 84.2
CARHR250600 Cardamine hirsuta HOM05D006737 ORTHO05D008418 1.3e-134 483.4 289 86.2
Thhalv10028823m.g Eutrema salsugineum HOM05D006737 ORTHO05D008418 3.0e-134 482.3 291 83.2
Sp6g02290 Schrenkiella parvula HOM05D006737 ORTHO05D008418 2.0e-127 459.5 291 81.4
BcaB01g02446 Brassica carinata HOM05D006737 ORTHO05D008418 2.7e-127 459.1 289 81.0
BcaC01g06761 Brassica carinata HOM05D006737 ORTHO05D008418 5.2e-123 444.9 290 77.9
BolC3t16077H Brassica oleracea HOM05D006737 ORTHO05D008418 1.4e-120 436.8 300 75.0
C03p37890 Brassica napus HOM05D006737 ORTHO05D008418 9.2e-120 434.1 301 75.1
A03p31080 Brassica napus HOM05D006737 ORTHO05D008418 7.8e-119 431.0 299 75.6
BraA03t12285Z Brassica rapa HOM05D006737 ORTHO05D008418 7.8e-119 431.0 299 75.6
Aa31LG5G2050 Aethionema arabicum HOM05D006737 ORTHO05D008418 1.4e-107 393.7 298 71.1
Prupe.8G262100 Prunus persica HOM05D006737 ORTHO05D008418 6.0e-87 325.1 291 57.4
Ciclev10021225m.g Citrus clementina HOM05D006737 ORTHO05D008418 1.0e-86 324.3 261 58.6
Atru.chr5.1140 Acer truncatum HOM05D006737 ORTHO05D008418 5.6e-85 318.5 281 55.9
MD03G1288800 Malus domestica HOM05D006737 ORTHO05D008418 9.6e-85 317.8 292 56.2
MD11G1309100 Malus domestica HOM05D006737 ORTHO05D008418 3.7e-84 315.8 297 54.5
Cfa005906 Carpinus fangiana HOM05D006737 ORTHO05D008418 6.9e-83 311.6 289 53.6
Gohir.D08G085900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 2.6e-82 309.7 286 54.9
Gorai.004G090400 Gossypium raimondii HOM05D006737 ORTHO05D008418 2.6e-82 309.7 286 54.9
Gohir.A08G076400 Gossypium hirsutum HOM05D006737 ORTHO05D008418 4.5e-82 308.9 286 54.9
Manes.01G219800 Manihot esculenta HOM05D006737 ORTHO05D008418 4.5e-82 308.9 261 55.2
FvH4_2g25800 Fragaria vesca HOM05D006737 ORTHO05D008418 7.6e-82 308.1 258 57.4
FAN15G3576 Fragaria x ananassa HOM05D006737 ORTHO05D008418 1.7e-81 307.0 258 57.4
FAN24G1027 Fragaria x ananassa HOM05D006737 ORTHO05D008418 2.2e-81 306.6 258 57.0
Haze_04944 Corylus avellana HOM05D006737 ORTHO05D008418 3.8e-81 305.8 287 52.6
RcHm_v2.0_Chr6g0294111 Rosa chinensis HOM05D006737 ORTHO05D008418 6.5e-81 305.1 257 56.4
GSVIVG01028025001 Vitis vinifera HOM05D006737 ORTHO05D008418 1.9e-80 303.5 261 55.9
Cpa.g.sc9.256 Carica papaya HOM05D006737 ORTHO05D008418 7.1e-80 301.6 274 54.4
Potri.002G203900 Populus trichocarpa HOM05D006737 ORTHO05D008418 7.1e-80 301.6 261 55.6
Thecc.01G301300 Theobroma cacao HOM05D006737 ORTHO05D008418 2.7e-79 299.7 316 49.1
Eucgr.H01107 Eucalyptus grandis HOM05D006737 ORTHO05D008418 7.9e-79 298.1 261 55.9
FAN27G1696 Fragaria x ananassa HOM05D006737 ORTHO05D008418 7.9e-79 298.1 271 54.6
TWI14G0449 Tripterygium wilfordii HOM05D006737 ORTHO05D008418 3.0e-78 296.2 286 50.3
Duzib138G1512 Durio zibethinus HOM05D006737 ORTHO05D008418 1.5e-77 293.9 260 54.6
Gorai.008G144900 Gossypium raimondii HOM05D006737 ORTHO05D008418 2.5e-77 293.1 266 53.4
Nn3g21504 Nelumbo nucifera HOM05D006737 ORTHO05D008418 9.7e-77 291.2 264 53.8
Lalb_Chr02g0146391 Lupinus albus HOM05D006737 ORTHO05D008418 1.3e-76 290.8 257 54.1
Gohir.D12G133900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 2.2e-76 290.0 261 52.9
FAN20G1602 Fragaria x ananassa HOM05D006737 ORTHO05D008418 6.3e-76 288.5 284 53.5
QL12p028401 Quercus lobata HOM05D006737 ORTHO05D008418 1.4e-75 287.3 278 51.1
Gohir.A12G130100 Gossypium hirsutum HOM05D006737 ORTHO05D008418 4.1e-75 285.8 299 48.8
CiPaw.07G109800 Carya illinoinensis HOM05D006737 ORTHO05D008418 9.0e-75 284.6 305 48.2
CANSAT25G2451 Cannabis sativa HOM05D006737 ORTHO05D008418 2.0e-74 283.5 289 51.6
CiPaw.07G109600 Carya illinoinensis HOM05D006737 ORTHO05D008418 3.4e-74 282.7 235 56.2
MBI19_g26092_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 3.4e-74 282.7 263 51.3
HanXRQChr04g0114161 Helianthus annuus HOM05D006737 ORTHO05D008418 4.5e-74 282.3 276 50.0
Glyma.19G211400 Glycine max HOM05D006737 ORTHO05D008418 5.9e-74 282.0 268 52.2
TAR365G0544 Trochodendron aralioides HOM05D006737 ORTHO05D008418 1.0e-73 281.2 295 50.5
Hma1.2p1_0491F.1_g164620 Hydrangea macrophylla HOM05D006737 ORTHO05D008418 1.7e-73 280.4 260 54.2
vmacro02447 Vaccinium macrocarpon HOM05D006737 ORTHO05D008418 2.2e-73 280.0 284 50.4
Lj6g0001904 Lotus japonicus HOM05D006737 ORTHO05D008418 5.0e-73 278.9 283 48.4
PGR119G0152 Punica granatum HOM05D006737 ORTHO05D008418 6.5e-73 278.5 284 49.6
MSTRG.12607 Avicennia marina HOM05D006737 ORTHO05D008418 8.5e-73 278.1 278 48.6
CSS0030900 Camellia sinensis var. sinensis HOM05D006737 ORTHO05D008418 1.1e-72 277.7 259 54.4
Sabra02G0155300 Salix brachista HOM05D006737 ORTHO05D008418 1.4e-72 277.3 303 48.2
CAN.G1209.24 Capsicum annuum HOM05D006737 ORTHO05D008418 1.9e-72 276.9 261 54.0
PSO170G1161 Papaver somniferum HOM05D006737 ORTHO05D008418 4.2e-72 275.8 270 50.0
Lsat_1_v5_gn_8_164261 Lactuca sativa HOM05D006737 ORTHO05D008418 1.2e-71 274.2 262 50.8
Sopen06g035940 Solanum pennellii HOM05D006737 ORTHO05D008418 2.1e-71 273.5 263 51.3
Solyc06g084570.4 Solanum lycopersicum HOM05D006737 ORTHO05D008418 2.7e-71 273.1 267 50.9
ECA236G1530 Erigeron canadensis HOM05D006737 ORTHO05D008418 7.9e-71 271.6 259 51.0
Phvul.001G207600 Phaseolus vulgaris HOM05D006737 ORTHO05D008418 1.4e-70 270.8 280 50.0
Actinidia01489 Actinidia chinensis HOM05D006737 ORTHO05D008418 2.3e-70 270.0 215 60.5
PSO407G0435 Papaver somniferum HOM05D006737 ORTHO05D008418 2.3e-70 270.0 272 49.3
Rhsim13G0009900 Rhododendron simsii HOM05D006737 ORTHO05D008418 5.1e-70 268.9 284 50.0
Sc05g0003760 Simmondsia chinensis HOM05D006737 ORTHO05D008418 4.3e-69 265.8 262 48.9
VMungo1383G2597 Vigna mungo HOM05D006737 ORTHO05D008418 7.4e-69 265.0 237 54.4
AUR62025575 Chenopodium quinoa HOM05D006737 ORTHO05D008418 4.8e-68 262.3 264 50.0
Peaxi162Scf00140g01213 Petunia axillaris HOM05D006737 ORTHO05D008418 4.8e-68 262.3 238 54.2
Hund05430 Selenicereus undatus HOM05D006737 ORTHO05D008418 6.3e-68 261.9 259 50.2
AUR62008669 Chenopodium quinoa HOM05D006737 ORTHO05D008418 8.2e-68 261.5 264 48.9
DCAR_002840 Daucus carota HOM05D006737 ORTHO05D008418 3.1e-67 259.6 283 48.8
arahy.Tifrunner.gnm1.ann1.AY1VU4 Arachis hypogaea HOM05D006737 ORTHO05D008418 6.9e-67 258.5 268 48.1
Aqoxy2G02933 Aquilegia oxysepala HOM05D006737 ORTHO05D008418 2.0e-66 256.9 293 44.7
Migut.N01508 Erythranthe guttata HOM05D006737 ORTHO05D008418 4.5e-66 255.8 249 51.0
Migut.O00484 Erythranthe guttata HOM05D006737 ORTHO05D008418 1.7e-65 253.8 249 51.0
SalBow2G2271 Salvia bowleyana HOM05D006737 ORTHO05D008418 2.9e-65 253.1 235 48.5
Cc01_g20900 Coffea canephora HOM05D006737 ORTHO05D008418 5.5e-64 248.8 301 46.2
EL10Ac7g17513 Beta vulgaris HOM05D006737 ORTHO05D008418 1.2e-63 247.7 258 47.3
MBI19_g25361_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 1.2e-63 247.7 303 43.9
Migut.J01135 Erythranthe guttata HOM05D006737 ORTHO05D008418 2.1e-63 246.9 256 48.8
arahy.Tifrunner.gnm1.ann1.B4PCIP Arachis hypogaea HOM05D006737 ORTHO05D008418 2.3e-62 243.4 240 48.8
CDE01G0235 Ceratophyllum demersum HOM05D006737 ORTHO05D008418 2.3e-62 243.4 264 48.5
SGA_v2.0_scaffold198G41142 Striga asiatica HOM05D006737 ORTHO05D008418 6.7e-62 241.9 288 44.1
ClCG01G014930 Citrullus lanatus HOM05D006737 ORTHO05D008418 2.0e-61 240.4 283 45.6
Nitab4.5_0004367g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 1.3e-60 237.7 337 41.2
COL.COLO4_23338 Corchorus olitorius HOM05D006737 ORTHO05D008418 8.2e-60 235.0 188 59.6
Oeu048335.1 Olea europaea HOM05D006737 ORTHO05D008418 1.1e-59 234.6 211 52.6
CsaV3_6G041030 Cucumis sativus L. HOM05D006737 ORTHO05D008418 5.3e-59 232.3 283 43.1
MELO3C024580.2 Cucumis melo HOM05D006737 ORTHO05D008418 2.6e-58 229.9 260 44.2
Zm00001eb097030 Zea mays HOM05D006737 ORTHO05D008418 8.8e-54 214.9 265 42.6
Os07g0247100 Oryza sativa ssp. japonica HOM05D006737 ORTHO05D008418 2.0e-53 213.8 265 43.4
Lj2A1195G25 Lonicera japonica HOM05D006737 ORTHO05D008418 8.2e-52 208.4 248 44.0
Sed0017513 Sechium edule HOM05D006737 ORTHO05D008418 2.0e-50 203.8 194 49.5
Pp3c24_12380 Physcomitrium patens HOM05D006737 ORTHO05D008418 4.4e-45 186.0 266 41.0
Dinv33057 Davidia involucrata HOM05D006737 ORTHO05D008418 2.6e-37 160.2 130 60.0
Oeu010666.1 Olea europaea HOM05D006737 ORTHO05D008418 5.7e-37 159.1 138 55.1
PGSC0003DMG400024036 Solanum tuberosum HOM05D006737 ORTHO05D008418 1.6e-34 151.0 126 57.1
Mapoly0132s0018 Marchantia polymorpha HOM05D006737 ORTHO05D008418 3.1e-27 126.7 213 32.4
BcaB01g02050 Brassica carinata HOM05D006737 ORTHO05D008418 1.0e-22 111.7 74 77.0
BcaB01g02447 Brassica carinata HOM05D006737 ORTHO05D008418 2.6e-21 107.1 64 78.1
Nitab4.5_0002820g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 5.4e-19 99.4 117 42.7
VMungo1383G3174 Vigna mungo HOM05D006737 ORTHO05D008418 5.4e-19 99.4 167 35.9
SEGI_39136 Sequoiadendron giganteum HOM05D006737 ORTHO05D008418 1.3e-17 94.7 141 41.1
arahy.Tifrunner.gnm1.ann1.MB1A81 Arachis hypogaea HOM05D006737 ORTHO05D008418 7.5e-13 79.0 102 39.2
Dinv31287 Davidia involucrata HOM05D006737 ORTHO05D008418 2.7e-10 70.5 86 41.9
Dinv07247 Davidia involucrata HOM05D006737 ORTHO05D008418 7.8e-10 68.9 86 40.7
arahy.Tifrunner.gnm1.ann1.MU6BTE Arachis hypogaea HOM05D006737 ORTHO05D008418 3.3e-08 63.5 93 36.6
Dinv17961 Davidia involucrata HOM05D006737 ORTHO05D008418 3.3e-08 63.5 86 38.4
MCO02G241 Micromonas commoda HOM05D006737 ORTHO05D008418 2.3e-06 57.4 137 23.4
Pp3c8_2950 Physcomitrium patens HOM05D006598 ORTHO05D008132 8.9e-06 55.5 197 27.9


User provided reference genes

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