Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G02090 Arabidopsis thaliana HOM05D006641 ORTHO05D007573 3.7e-106 388.3 203 100.0
AL6G51140 Arabidopsis lyrata HOM05D006641 ORTHO05D007573 2.7e-96 355.5 211 91.5
Carub.0006s3513 Capsella rubella HOM05D006641 ORTHO05D007573 1.2e-85 320.1 217 82.0
BcaC04g24036 Brassica carinata HOM05D001136 ORTHO05D007573 1.4e-84 316.6 204 81.9
BolC9t53098H Brassica oleracea HOM05D001136 ORTHO05D007573 1.4e-84 316.6 204 81.9
A09p01550 Brassica napus HOM05D006641 ORTHO05D007573 1.8e-84 316.2 201 82.1
C09p01650 Brassica napus HOM05D001136 ORTHO05D007573 5.2e-84 314.7 204 81.4
BcaB01g02078 Brassica carinata HOM05D006641 ORTHO05D007573 1.5e-83 313.2 201 82.6
Sp6g01980 Schrenkiella parvula HOM05D006641 ORTHO05D007573 1.4e-81 306.6 211 79.1
CARHR249590 Cardamine hirsuta HOM05D006641 ORTHO05D007573 2.0e-80 302.8 208 84.1
BraA09t35814Z Brassica rapa HOM05D001136 ORTHO05D007573 3.6e-77 292.0 208 77.4
Thhalv10029320m.g Eutrema salsugineum HOM05D006641 ORTHO05D007573 8.1e-77 290.8 218 74.8
Aa31LG5G1730 Aethionema arabicum HOM05D006641 ORTHO05D007573 4.6e-72 275.0 210 70.5
THA.LOC104801302 Tarenaya hassleriana HOM05D006641 ORTHO05D007573 3.1e-52 209.1 208 61.1
ClCG09G005170 Citrullus lanatus HOM05D006641 ORTHO05D007573 3.4e-27 125.9 192 43.8
SalBow3G3599 Salvia bowleyana HOM05D006641 ORTHO05D007573 1.3e-26 124.0 219 41.1
Lj1g0024392 Lotus japonicus HOM05D006641 ORTHO05D007573 4.2e-25 119.0 196 39.3
CsaV3_7G029900 Cucumis sativus L. HOM05D006641 ORTHO05D007573 7.2e-25 118.2 210 41.0
Atru.chr5.1033 Acer truncatum HOM05D006641 ORTHO05D007573 1.2e-24 117.5 198 42.9
Oeu008464.1 Olea europaea HOM05D006641 ORTHO05D007573 3.5e-24 115.9 194 41.8
Sed0015554 Sechium edule HOM05D006641 ORTHO05D007573 7.9e-24 114.8 209 40.7
MELO3C015931.2 Cucumis melo HOM05D006641 ORTHO05D007573 1.0e-23 114.4 215 38.6
Ca_10290_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 5.1e-23 112.1 213 36.2
Ca_30054_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 5.1e-23 112.1 213 36.2
DCAR_005769 Daucus carota HOM05D006641 ORTHO05D007573 5.1e-23 112.1 193 39.9
Rhsim13G0005400 Rhododendron simsii HOM05D006641 ORTHO05D007573 1.1e-22 110.9 207 39.1
Nitab4.5_0001301g0080 Nicotiana tabacum HOM05D006641 ORTHO05D007573 1.5e-22 110.5 206 38.3
Ciclev10021856m.g Citrus clementina HOM05D006641 ORTHO05D007573 1.9e-22 110.2 195 41.5
Peaxi162Scf00691g00003 Petunia axillaris HOM05D006641 ORTHO05D007573 1.9e-22 110.2 207 38.6
Glyma.19G215600 Glycine max HOM05D006641 ORTHO05D007573 2.5e-22 109.8 198 36.9
Hma1.2p1_0486F.1_g163110 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 3.3e-22 109.4 192 40.1
Hma1.2p1_0486F.1_g163121 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 3.3e-22 109.4 192 40.1
Ah.11g049320 Amaranthus hybridus HOM05D000446 ORTHO05D000321 5.7e-22 108.6 184 40.2
CSS0030498 Camellia sinensis var. sinensis HOM05D006641 ORTHO05D007573 1.3e-21 107.5 192 42.2
Lalb_Chr15g0078301 Lupinus albus HOM05D006641 ORTHO05D007573 1.3e-21 107.5 193 39.4
Manes.05G002600 Manihot esculenta HOM05D006641 ORTHO05D007573 1.3e-21 107.5 196 39.3
MD03G1296400 Malus domestica HOM05D006641 ORTHO05D007573 1.6e-21 107.1 216 38.4
Cfa005814 Carpinus fangiana HOM05D006641 ORTHO05D007573 2.8e-21 106.3 207 39.1
CiPaw.07G116300 Carya illinoinensis HOM05D006641 ORTHO05D007573 2.8e-21 106.3 213 39.4
Duzib133G1491 Durio zibethinus HOM05D006641 ORTHO05D007573 3.7e-21 105.9 197 36.5
Gorai.001G143700 Gossypium raimondii HOM05D006641 ORTHO05D007573 3.7e-21 105.9 198 40.4
TWI36G0114 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 3.7e-21 105.9 198 38.9
Gohir.A07G127900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 4.8e-21 105.5 198 40.9
Gohir.D07G132300 Gossypium hirsutum HOM05D006641 ORTHO05D007573 4.8e-21 105.5 198 40.4
Glyma.03G218800 Glycine max HOM05D006641 ORTHO05D007573 6.3e-21 105.1 192 35.4
Nitab4.5_0008979g0010 Nicotiana tabacum HOM05D006641 ORTHO05D007573 6.3e-21 105.1 203 36.5
FAN13G0974 Fragaria x ananassa HOM05D001136 ORTHO05D007573 1.1e-20 104.4 211 37.9
Cpa.g.sc18.26 Carica papaya HOM05D006641 ORTHO05D007573 1.4e-20 104.0 219 36.5
Eucgr.H01054 Eucalyptus grandis HOM05D006641 ORTHO05D007573 1.4e-20 104.0 194 40.2
Thecc.01G311800 Theobroma cacao HOM05D006641 ORTHO05D007573 1.4e-20 104.0 213 37.6
arahy.Tifrunner.gnm1.ann1.DB9XMS Arachis hypogaea HOM05D006641 ORTHO05D007573 2.4e-20 103.2 210 38.1
Duzib211G0496 Durio zibethinus HOM05D006641 ORTHO05D007573 2.4e-20 103.2 193 36.3
Manes.01G226800 Manihot esculenta HOM05D006641 ORTHO05D007573 2.4e-20 103.2 194 40.2
Potri.014G122100 Populus trichocarpa HOM05D006641 ORTHO05D007573 2.4e-20 103.2 202 40.1
FvH4_5g39350 Fragaria vesca HOM05D006641 ORTHO05D007573 3.1e-20 102.8 211 37.9
Medtr1g087230 Medicago truncatula HOM05D006641 ORTHO05D007573 3.1e-20 102.8 218 35.8
FAN08G0230 Fragaria x ananassa HOM05D001136 ORTHO05D007573 4.1e-20 102.4 211 37.9
FAN08G2922 Fragaria x ananassa HOM05D006641 ORTHO05D007573 4.1e-20 102.4 211 37.9
FAN18G1732 Fragaria x ananassa HOM05D001136 ORTHO05D007573 4.1e-20 102.4 211 37.9
Psat6g162160 Pisum sativum HOM05D006641 ORTHO05D007573 4.1e-20 102.4 205 37.1
Sabra02G0160400 Salix brachista HOM05D006641 ORTHO05D007573 4.1e-20 102.4 211 40.8
SGA_v2.0_scaffold376G50279 Striga asiatica HOM05D006641 ORTHO05D007573 4.1e-20 102.4 202 39.1
Sabra14G0090500 Salix brachista HOM05D006641 ORTHO05D007573 5.3e-20 102.1 198 39.9
ATR0706G193 Amborella trichopoda HOM05D006641 ORTHO05D007573 6.9e-20 101.7 211 36.5
Migut.D00088 Erythranthe guttata HOM05D006641 ORTHO05D007573 6.9e-20 101.7 217 37.3
TAR362G0542 Trochodendron aralioides HOM05D006641 ORTHO05D007573 6.9e-20 101.7 207 35.7
Duzib138G1609 Durio zibethinus HOM05D006641 ORTHO05D007573 9.0e-20 101.3 194 40.2
Glyma.02G013200 Glycine max HOM05D006641 ORTHO05D007573 9.0e-20 101.3 195 37.9
PGSC0003DMG400009037 Solanum tuberosum HOM05D006641 ORTHO05D007573 9.0e-20 101.3 198 38.9
vmacro02409 Vaccinium macrocarpon HOM05D006641 ORTHO05D007573 9.0e-20 101.3 213 37.1
Psat3g020560 Pisum sativum HOM05D006641 ORTHO05D007573 1.2e-19 100.9 189 37.0
TPR.G19761 Trifolium pratense HOM05D006641 ORTHO05D007573 1.2e-19 100.9 210 37.1
MD11G1315800 Malus domestica HOM05D006641 ORTHO05D007573 1.5e-19 100.5 216 35.6
Phvul.001G212200 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 1.5e-19 100.5 195 36.4
VMungo0007G0001 Vigna mungo HOM05D006641 ORTHO05D007573 1.5e-19 100.5 217 37.3
Prupe.8G270900 Prunus persica HOM05D006641 ORTHO05D007573 2.0e-19 100.1 213 36.6
Dinv33109 Davidia involucrata HOM05D006641 ORTHO05D007573 2.6e-19 99.8 205 38.0
FAN04G2480 Fragaria x ananassa HOM05D001136 ORTHO05D007573 2.6e-19 99.8 211 36.5
Lalb_Chr02g0146781 Lupinus albus HOM05D006641 ORTHO05D007573 2.6e-19 99.8 193 38.9
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 4.5e-19 99.0 190 38.9
PGR119G1902 Punica granatum HOM05D006641 ORTHO05D007573 4.5e-19 99.0 224 36.6
Solyc01g079550.2 Solanum lycopersicum HOM05D006641 ORTHO05D007573 4.5e-19 99.0 197 39.1
VMungo1383G0778 Vigna mungo HOM05D006641 ORTHO05D007573 4.5e-19 99.0 191 38.2
Potri.002G196900 Populus trichocarpa HOM05D006641 ORTHO05D007573 7.7e-19 98.2 207 37.7
QL12p020167 Quercus lobata HOM05D006641 ORTHO05D007573 7.7e-19 98.2 205 38.5
CANSAT25G1473 Cannabis sativa HOM05D006641 ORTHO05D007573 1.0e-18 97.8 205 38.5
Lj5g0026629 Lotus japonicus HOM05D006641 ORTHO05D007573 1.0e-18 97.8 216 37.0
Phvul.007G214900 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 1.0e-18 97.8 213 37.1
Sopen01g031320 Solanum pennellii HOM05D006641 ORTHO05D007573 1.0e-18 97.8 197 38.6
Aqoxy2G01829 Aquilegia oxysepala HOM05D006641 ORTHO05D007573 1.3e-18 97.4 189 38.6
RcHm_v2.0_Chr7g0241631 Rosa chinensis HOM05D006641 ORTHO05D007573 1.7e-18 97.1 217 35.5
COL.COLO4_23247 Corchorus olitorius HOM05D006641 ORTHO05D007573 2.9e-18 96.3 215 35.8
Cc01_g21330 Coffea canephora HOM05D006641 ORTHO05D007573 3.8e-18 95.9 242 33.9
PSO761G0656 Papaver somniferum HOM05D006641 ORTHO05D007573 5.0e-18 95.5 215 35.8
Glyma.10G013800 Glycine max HOM05D006641 ORTHO05D007573 6.5e-18 95.1 201 34.8
PSO210G6531 Papaver somniferum HOM05D006641 ORTHO05D007573 8.5e-18 94.7 211 36.0
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.1e-17 94.4 200 37.0
Medtr7g109410 Medicago truncatula HOM05D006641 ORTHO05D007573 1.9e-17 93.6 193 36.3
AUR62024668 Chenopodium quinoa HOM05D006641 ORTHO05D007573 5.5e-17 92.0 194 35.6
DCAR_002902 Daucus carota HOM05D006641 ORTHO05D007573 7.2e-17 91.7 210 36.2
Actinidia27614 Actinidia chinensis HOM05D006641 ORTHO05D007573 1.2e-16 90.9 191 37.2
Lsat_1_v5_gn_9_2880 Lactuca sativa HOM05D006641 ORTHO05D007573 1.2e-16 90.9 195 36.4
AUR62011824 Chenopodium quinoa HOM05D006641 ORTHO05D007573 3.6e-16 89.4 191 35.6
Hma1.2p1_0212F.1_g090010 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 3.6e-16 89.4 206 35.0
HanXRQChr15g0465011 Helianthus annuus HOM05D006641 ORTHO05D007573 4.6e-16 89.0 185 36.2
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 6.1e-16 88.6 196 37.8
Haze_05028 Corylus avellana HOM05D006641 ORTHO05D007573 7.9e-16 88.2 193 36.8
Nn3g21666 Nelumbo nucifera HOM05D006641 ORTHO05D007573 1.4e-15 87.4 196 38.8
Os03g0305200 Oryza sativa ssp. japonica HOM05D006641 ORTHO05D007573 1.8e-15 87.0 211 32.7
EL10As5g23515 Beta vulgaris HOM05D006641 ORTHO05D007573 5.1e-15 85.5 193 34.7
Gorai.004G144000 Gossypium raimondii HOM05D006641 ORTHO05D007573 5.1e-15 85.5 198 34.8
Gohir.D08G139900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.1e-14 84.3 198 34.8
Gohir.D12G129400 Gossypium hirsutum HOM05D006641 ORTHO05D007573 3.3e-14 82.8 179 33.5
Gohir.A08G119133 Gossypium hirsutum HOM05D006641 ORTHO05D007573 5.7e-14 82.0 198 34.3
Gorai.008G140500 Gossypium raimondii HOM05D006641 ORTHO05D007573 9.7e-14 81.3 179 33.0
TAR589G0002 Trochodendron aralioides HOM05D006641 ORTHO05D007573 1.3e-13 80.9 161 36.6
TAR633G2793 Trochodendron aralioides HOM05D006641 ORTHO05D007573 1.3e-13 80.9 161 36.6
Zm00001eb396340 Zea mays HOM05D006641 ORTHO05D007573 3.7e-13 79.3 219 32.0
Gohir.A12G125900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 4.8e-13 79.0 192 33.9
PSO357G0224 Papaver somniferum HOM05D006641 ORTHO05D007573 4.8e-13 79.0 218 33.5
PSO170G1046 Papaver somniferum HOM05D006641 ORTHO05D007573 1.4e-12 77.4 216 31.9
Eucgr.K03540 Eucalyptus grandis HOM05D006641 ORTHO05D007573 7.7e-11 71.6 219 32.4
Zm00001eb014520 Zea mays HOM05D006641 ORTHO05D007573 2.9e-10 69.7 202 30.7
arahy.Tifrunner.gnm1.ann1.Q9I7GX Arachis hypogaea HOM05D006641 ORTHO05D007573 8.5e-10 68.2 166 34.3
TPR.G4797 Trifolium pratense HOM05D006641 ORTHO05D007573 2.5e-09 66.6 150 36.0
Cpa.g.sc170.5 Carica papaya HOM05D001935 ORTHO05D001700 1.2e-08 64.3 192 30.7
Nn1g02733 Nelumbo nucifera HOM05D001935 ORTHO05D001700 4.7e-08 62.4 179 27.4
SEGI_14616 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 1.4e-07 60.8 180 30.6
SEGI_04656 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 1.8e-07 60.5 185 30.8
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 3.0e-07 59.7 185 25.9
HPP92_018375 Vanilla planifolia HOM05D006641 ORTHO05D007573 8.8e-07 58.2 200 29.0
TAR629G0885 Trochodendron aralioides HOM05D007478 ORTHO05D001700 2.0e-06 57.0 174 29.9
Nn3g18024 Nelumbo nucifera HOM05D001935 ORTHO05D001700 2.6e-06 56.6 179 26.8
SEGI_32719 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 3.3e-06 56.2 105 36.2
PGR042G0803 Punica granatum HOM05D001935 ORTHO05D001700 5.7e-06 55.5 175 26.9
ATR0326G051 Amborella trichopoda HOM05D001935 ORTHO05D001700 7.4e-06 55.1 172 29.7
Nitab4.5_0001648g0030 Nicotiana tabacum HOM05D001935 ORTHO05D001700 7.4e-06 55.1 174 27.6
HanXRQChr08g0212901 Helianthus annuus HOM05D001935 ORTHO05D001700 9.7e-06 54.7 182 26.9


User provided reference genes

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