Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G01995 Arabidopsis thaliana HOM05D001695 ORTHO05D008931 9.0e-102 373.6 194 100.0
AL6G51250 Arabidopsis lyrata HOM05D001695 ORTHO05D008931 2.6e-80 302.4 178 89.9
Carub.0006s3523 Capsella rubella HOM05D001695 ORTHO05D008931 5.2e-73 278.1 157 91.1
Thhalv10028897m.g Eutrema salsugineum HOM05D001695 ORTHO05D008931 8.8e-73 277.3 174 84.5
Sp6g01880 Schrenkiella parvula HOM05D001695 ORTHO05D008931 5.7e-72 274.6 178 82.0
BraA03t12313Z Brassica rapa HOM05D001695 ORTHO05D008931 5.5e-67 258.1 178 77.5
BcaB01g02404 Brassica carinata HOM05D001695 ORTHO05D008931 9.4e-67 257.3 176 79.0
C03p38230 Brassica napus HOM05D001695 ORTHO05D008931 3.4e-64 248.8 187 72.2
BcaC01g06785 Brassica carinata HOM05D001695 ORTHO05D008931 2.2e-63 246.1 178 74.7
Aa31LG5G1630 Aethionema arabicum HOM05D001695 ORTHO05D008931 3.7e-63 245.4 178 73.6
BolC3t16104H Brassica oleracea HOM05D001695 ORTHO05D008931 1.2e-61 240.4 178 73.0
A03p31310 Brassica napus HOM05D001695 ORTHO05D008931 5.7e-56 221.5 125 87.2
THA.LOC104816093 Tarenaya hassleriana HOM05D001695 ORTHO05D008931 5.9e-53 211.5 197 62.9
Cpa.g.sc18.63 Carica papaya HOM05D001695 ORTHO05D008931 6.8e-49 198.0 171 63.2
CARHR249680 Cardamine hirsuta HOM05D001695 ORTHO05D008931 2.4e-46 189.5 102 93.1
Gohir.D11G113100 Gossypium hirsutum HOM05D001695 ORTHO05D008931 1.0e-44 184.1 176 59.7
Gorai.007G121600 Gossypium raimondii HOM05D001695 ORTHO05D008931 3.0e-44 182.6 176 58.5
Medtr1g086840 Medicago truncatula HOM05D001695 ORTHO05D008931 1.1e-43 180.6 148 60.8
COL.COLO4_23217 Corchorus olitorius HOM05D001695 ORTHO05D008931 2.5e-43 179.5 177 58.8
Lj5g0006746 Lotus japonicus HOM05D001695 ORTHO05D008931 2.5e-43 179.5 149 60.4
Gohir.A11G108600 Gossypium hirsutum HOM05D001695 ORTHO05D008931 3.3e-43 179.1 176 58.5
TWI36G1028 Tripterygium wilfordii HOM05D001695 ORTHO05D008931 5.6e-43 178.3 144 59.7
Psat6g162720 Pisum sativum HOM05D001695 ORTHO05D008931 7.3e-43 177.9 125 68.8
Glyma.02G011300 Glycine max HOM05D001695 ORTHO05D008931 1.2e-42 177.2 151 61.6
Glyma.10G011900 Glycine max HOM05D001695 ORTHO05D008931 4.7e-42 175.3 126 68.3
PGR083G0532 Punica granatum HOM05D001695 ORTHO05D008931 1.0e-41 174.1 150 59.3
Phvul.007G213300 Phaseolus vulgaris HOM05D001695 ORTHO05D008931 1.8e-41 173.3 150 60.0
ClCG09G005020 Citrullus lanatus HOM05D001695 ORTHO05D008931 5.2e-41 171.8 170 55.3
TPR.G38641 Trifolium pratense HOM05D001695 ORTHO05D008931 5.2e-41 171.8 127 67.7
CsaV3_7G030040 Cucumis sativus L. HOM05D001695 ORTHO05D008931 1.2e-40 170.6 173 54.9
Ca_10275_v3 Cicer arietinum L. HOM05D001695 ORTHO05D008931 1.5e-40 170.2 151 60.3
Sed0027290 Sechium edule HOM05D001695 ORTHO05D008931 1.5e-40 170.2 169 55.0
VMungo0720G1526 Vigna mungo HOM05D001695 ORTHO05D008931 1.5e-40 170.2 138 63.8
arahy.Tifrunner.gnm1.ann1.JS82EF Arachis hypogaea HOM05D001695 ORTHO05D008931 2.0e-40 169.9 125 64.0
arahy.Tifrunner.gnm1.ann1.CM9HZ9 Arachis hypogaea HOM05D001695 ORTHO05D008931 3.4e-40 169.1 125 63.2
Manes.17G076100 Manihot esculenta HOM05D001695 ORTHO05D008931 9.8e-40 167.5 141 57.4
QL12p019503 Quercus lobata HOM05D001695 ORTHO05D008931 2.2e-39 166.4 138 60.9
Rhsim01G0291700 Rhododendron simsii HOM05D001695 ORTHO05D008931 3.7e-39 165.6 180 51.7
Sabra02G0162100 Salix brachista HOM05D001695 ORTHO05D008931 3.7e-39 165.6 154 59.1
MD09G1283900 Malus domestica HOM05D001695 ORTHO05D008931 4.9e-39 165.2 169 51.5
Sc05g0000360 Simmondsia chinensis HOM05D001695 ORTHO05D008931 4.9e-39 165.2 144 58.3
Actinidia25858 Actinidia chinensis HOM05D000822 ORTHO05D004949 6.4e-39 164.9 144 56.2
AUR62024636 Chenopodium quinoa HOM05D001695 ORTHO05D008931 6.4e-39 164.9 145 58.6
Eucgr.H01003 Eucalyptus grandis HOM05D001695 ORTHO05D008931 8.3e-39 164.5 172 52.9
CiPaw.08G088600 Carya illinoinensis HOM05D001695 ORTHO05D008931 1.1e-38 164.1 145 57.9
ECA236G2369 Erigeron canadensis HOM05D001695 ORTHO05D008931 1.1e-38 164.1 125 64.8
MELO3C015917.2 Cucumis melo HOM05D001695 ORTHO05D008931 1.9e-38 163.3 182 52.7
Manes.17G075801 Manihot esculenta HOM05D001695 ORTHO05D008931 1.9e-38 163.3 141 56.7
HPP92_013517 Vanilla planifolia HOM05D001695 ORTHO05D008931 2.4e-38 162.9 144 57.6
CANSAT25G2049 Cannabis sativa HOM05D001695 ORTHO05D008931 7.0e-38 161.4 170 51.2
ATR0796G256 Amborella trichopoda HOM05D001695 ORTHO05D008931 9.2e-38 161.0 144 54.2
Nn4g25576 Nelumbo nucifera HOM05D001695 ORTHO05D008931 9.2e-38 161.0 125 61.6
TAR365G0923 Trochodendron aralioides HOM05D001695 ORTHO05D008931 9.2e-38 161.0 136 60.3
Lalb_Chr06g0166931 Lupinus albus HOM05D001695 ORTHO05D008931 1.2e-37 160.6 141 58.2
Oeu038031.1 Olea europaea HOM05D001695 ORTHO05D008931 2.0e-37 159.8 144 53.5
HanXRQChr04g0106151 Helianthus annuus HOM05D001695 ORTHO05D008931 2.7e-37 159.5 124 63.7
HanXRQChr04g0106161 Helianthus annuus HOM05D001695 ORTHO05D008931 2.7e-37 159.5 124 63.7
FvH4_1g27090 Fragaria vesca HOM05D001695 ORTHO05D008931 3.5e-37 159.1 145 54.5
FAN19G1767 Fragaria x ananassa HOM05D001695 ORTHO05D008931 3.5e-37 159.1 145 54.5
Prupe.3G010800 Prunus persica HOM05D001695 ORTHO05D008931 3.5e-37 159.1 142 57.0
Hma1.2p1_0486F.1_g163390 Hydrangea macrophylla HOM05D001695 ORTHO05D008931 7.8e-37 157.9 130 59.2
Potri.002G194500 Populus trichocarpa HOM05D001695 ORTHO05D008931 7.8e-37 157.9 123 64.2
Ah.11g049190 Amaranthus hybridus HOM05D001695 ORTHO05D008931 1.3e-36 157.1 133 60.2
vmacro15106 Vaccinium macrocarpon HOM05D001695 ORTHO05D008931 1.3e-36 157.1 171 49.7
Aqoxy5G03154 Aquilegia oxysepala HOM05D001695 ORTHO05D008931 2.3e-36 156.4 136 54.4
CDE08G1253 Ceratophyllum demersum HOM05D001695 ORTHO05D008931 3.0e-36 156.0 171 50.3
Migut.D00074 Erythranthe guttata HOM05D001695 ORTHO05D008931 3.9e-36 155.6 138 53.6
MSTRG.18094 Avicennia marina HOM05D001695 ORTHO05D008931 6.6e-36 154.8 172 48.8
Os05g0131100 Oryza sativa ssp. japonica HOM05D001695 ORTHO05D008931 6.6e-36 154.8 170 50.6
RcHm_v2.0_Chr3g0487411 Rosa chinensis HOM05D001695 ORTHO05D008931 6.6e-36 154.8 142 55.6
GSVIVG01028138001 Vitis vinifera HOM05D001695 ORTHO05D008931 6.6e-36 154.8 159 50.9
PGSC0003DMG401024048 Solanum tuberosum HOM05D001695 ORTHO05D008931 1.1e-35 154.1 121 64.5
PGSC0003DMG402024048 Solanum tuberosum HOM05D001695 ORTHO05D008931 1.1e-35 154.1 144 57.6
SGA_v2.0_scaffold334G49075 Striga asiatica HOM05D001695 ORTHO05D008931 1.1e-35 154.1 151 51.0
Zm00001eb417120 Zea mays HOM05D001695 ORTHO05D008931 2.1e-34 149.8 144 52.8
FAN26G1718 Fragaria x ananassa HOM05D001695 ORTHO05D008931 2.8e-34 149.4 166 48.8
Lsat_1_v5_gn_8_166701 Lactuca sativa HOM05D001695 ORTHO05D008931 3.6e-34 149.1 138 55.1
Ciclev10023805m.g Citrus clementina HOM05D001695 ORTHO05D008931 4.7e-34 148.7 150 52.0
FAN23G2687 Fragaria x ananassa HOM05D001695 ORTHO05D008931 4.7e-34 148.7 160 49.4
Hund09640 Selenicereus undatus HOM05D001695 ORTHO05D008931 4.7e-34 148.7 143 56.6
Solyc06g084610.4 Solanum lycopersicum HOM05D001695 ORTHO05D008931 6.2e-34 148.3 144 56.2
CAN.G1209.18 Capsicum annuum HOM05D001695 ORTHO05D008931 1.4e-33 147.1 116 63.8
PSO170G0549 Papaver somniferum HOM05D001695 ORTHO05D008931 2.3e-33 146.4 143 54.5
Lj2C1207G12 Lonicera japonica HOM05D001695 ORTHO05D006039 1.2e-32 144.1 106 67.9
Dinv10115 Davidia involucrata HOM05D001695 ORTHO05D008931 9.8e-32 141.0 105 65.7
Nitab4.5_0004006g0030 Nicotiana tabacum HOM05D001695 ORTHO05D008931 9.8e-32 141.0 145 51.7
Cc01_g21540 Coffea canephora HOM05D001695 ORTHO05D008931 1.3e-31 140.6 119 58.8
Pp3c24_12440 Physcomitrium patens HOM05D001695 ORTHO05D008931 1.9e-30 136.7 137 48.2
Nitab4.5_0002828g0040 Nicotiana tabacum HOM05D001695 ORTHO05D008931 2.7e-29 132.9 145 49.0
Mapoly0015s0006 Marchantia polymorpha HOM05D001695 ORTHO05D008931 3.0e-28 129.4 134 50.0
EL10As5g23547 Beta vulgaris HOM05D001695 ORTHO05D008931 5.6e-27 125.2 148 53.4
SMO146G0071 Selaginella moellendorffii HOM05D001695 ORTHO05D008931 1.6e-26 123.6 123 48.8
Atru.chr5.978 Acer truncatum HOM05D001695 ORTHO05D008931 1.4e-25 120.6 89 66.3
Haze_05062 Corylus avellana HOM05D001695 ORTHO05D008931 3.4e-24 115.9 166 43.4
AagrBONN_evm.TU.Sc2ySwM_228.3346 Anthoceros agrestis HOM05D001695 ORTHO05D008931 4.4e-24 115.5 131 47.3
DCAR_002887 Daucus carota HOM05D001695 ORTHO05D008931 5.8e-24 115.2 110 60.0
Thecc.01G315100 Theobroma cacao HOM05D001695 ORTHO05D008931 2.2e-23 113.2 81 69.1
Duzib138G1242 Durio zibethinus HOM05D001695 ORTHO05D008931 1.4e-22 110.5 198 41.9
CSS0013511 Camellia sinensis var. sinensis HOM05D001695 ORTHO05D008931 1.0e-20 104.4 77 66.2
CSS0011700 Camellia sinensis var. sinensis HOM05D001695 ORTHO05D008931 5.1e-20 102.1 77 64.9
CSS0026190 Camellia sinensis var. sinensis HOM05D001695 ORTHO05D008931 5.1e-20 102.1 77 64.9
CSS0043376 Camellia sinensis var. sinensis HOM05D001695 ORTHO05D008931 5.1e-20 102.1 77 64.9
AUR62011789 Chenopodium quinoa HOM05D001695 ORTHO05D008931 2.1e-18 96.7 76 60.5
unitig_85.g27188 Utricularia gibba HOM05D001695 ORTHO05D008931 3.6e-18 95.9 139 41.7
MBI19_g03237_MAGBIO Magnolia biondii HOM05D001695 ORTHO05D008931 1.5e-16 90.5 68 63.2
Peaxi162Scf00140g01356 Petunia axillaris HOM05D001695 ORTHO05D008931 2.0e-16 90.1 67 64.2
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 2.0e-16 90.1 65 67.7
Cre10.g426350 Chlamydomonas reinhardtii HOM05D001695 ORTHO05D008931 4.2e-14 82.4 132 37.9
AUR62011788 Chenopodium quinoa HOM05D001695 ORTHO05D012433 1.9e-11 73.6 66 57.6
Os05g0131401 Oryza sativa ssp. japonica HOM05D001695 ORTHO05D008931 8.1e-10 68.2 76 47.4
C08p53770 Brassica napus HOM05D001349 ORTHO05D027195 4.0e-09 65.9 34 79.4
AagrBONN_evm.TU.Sc2ySwM_344.2007 Anthoceros agrestis HOM05D001695 ORTHO05D002735 9.9e-08 61.2 158 32.3
BolC8t52890H Brassica oleracea HOM05D001695 ORTHO05D008931 2.2e-07 60.1 43 72.1
Pp3c26_11090 Physcomitrium patens HOM05D001695 ORTHO05D002735 1.1e-06 57.8 142 32.4
SEGI_06911 Sequoiadendron giganteum HOM05D001695 ORTHO05D002735 2.4e-06 56.6 141 29.8
Sopen06g035980 Solanum pennellii HOM05D001695 ORTHO05D008931 5.4e-06 55.5 88 37.5
Potri.001G083300 Populus trichocarpa HOM05D001695 ORTHO05D002735 7.1e-06 55.1 151 31.1


User provided reference genes

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