Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G01900 Arabidopsis thaliana HOM05D006913 ORTHO05D008720 3.4e-104 381.7 197 100.0
AL6G51370 Arabidopsis lyrata HOM05D006913 ORTHO05D008720 2.8e-98 362.1 197 93.9
Carub.0006s3531 Capsella rubella HOM05D006913 ORTHO05D008720 5.8e-96 354.4 197 93.4
Thhalv10028983m.g Eutrema salsugineum HOM05D006913 ORTHO05D008720 1.7e-92 342.8 197 90.4
Sp6g01770 Schrenkiella parvula HOM05D006913 ORTHO05D008720 8.0e-90 334.0 194 89.7
C03p38310 Brassica napus HOM05D006913 ORTHO05D008720 9.2e-86 320.5 198 86.4
BcaC01g06792 Brassica carinata HOM05D006913 ORTHO05D008720 7.8e-85 317.4 198 85.9
BolC3t16112H Brassica oleracea HOM05D006913 ORTHO05D008720 7.8e-85 317.4 198 85.9
BraA03t12321Z Brassica rapa HOM05D006913 ORTHO05D008720 1.2e-82 310.1 198 84.3
BcaB01g02398 Brassica carinata HOM05D006913 ORTHO05D008720 6.2e-82 307.8 198 84.3
A03p31400 Brassica napus HOM05D006913 ORTHO05D008720 1.1e-81 307.0 198 83.8
Aa31LG5G1440 Aethionema arabicum HOM05D006913 ORTHO05D008720 9.9e-80 300.4 190 82.1
THA.LOC104801315 Tarenaya hassleriana HOM05D006913 ORTHO05D008720 1.6e-77 293.1 197 80.7
Thecc.01G320200 Theobroma cacao HOM05D006913 ORTHO05D008720 9.9e-64 247.3 161 80.1
BcaB01g02393 Brassica carinata HOM05D006913 ORTHO05D008720 1.1e-62 243.8 132 94.7
Atru.chr5.924 Acer truncatum HOM05D006913 ORTHO05D008720 9.3e-62 240.7 193 70.5
Prupe.3G005300 Prunus persica HOM05D006913 ORTHO05D008720 1.2e-61 240.4 188 69.1
MD09G1287900 Malus domestica HOM05D006913 ORTHO05D008720 1.6e-61 240.0 151 78.8
Ciclev10022378m.g Citrus clementina HOM05D006913 ORTHO05D008720 6.0e-61 238.0 188 70.2
MD17G1280100 Malus domestica HOM05D006913 ORTHO05D008720 1.3e-60 236.9 149 79.9
Duzib138G1774 Durio zibethinus HOM05D006913 ORTHO05D008720 6.6e-60 234.6 191 69.6
Potri.002G191300 Populus trichocarpa HOM05D006913 ORTHO05D008720 1.5e-59 233.4 195 64.6
TAR362G1022 Trochodendron aralioides HOM05D006913 ORTHO05D008720 5.6e-59 231.5 196 65.3
CSS0007691 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 7.3e-59 231.1 190 65.8
TWI59G1195 Tripterygium wilfordii HOM05D006913 ORTHO05D008720 7.3e-59 231.1 188 66.5
RcHm_v2.0_Chr3g0486731 Rosa chinensis HOM05D006913 ORTHO05D008720 1.3e-58 230.3 197 63.5
Nn3g21840 Nelumbo nucifera HOM05D006913 ORTHO05D008720 1.6e-58 229.9 167 74.3
GSVIVG01028181001 Vitis vinifera HOM05D006913 ORTHO05D008720 1.6e-58 229.9 188 67.0
CSS0013168 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 3.6e-58 228.8 190 65.8
FAN28G1862 Fragaria x ananassa HOM05D006913 ORTHO05D008720 6.2e-58 228.0 193 64.2
SalBow3G0392 Salvia bowleyana HOM05D006913 ORTHO05D008720 8.1e-58 227.6 199 65.3
Cfa004859 Carpinus fangiana HOM05D006913 ORTHO05D008720 1.1e-57 227.3 189 66.1
Haze_05096 Corylus avellana HOM05D006913 ORTHO05D008720 3.1e-57 225.7 190 65.3
MELO3C023629.2 Cucumis melo HOM05D006913 ORTHO05D008720 3.1e-57 225.7 151 77.5
FvH4_1g26590 Fragaria vesca HOM05D006913 ORTHO05D008720 3.1e-57 225.7 190 64.7
Medtr7g109970 Medicago truncatula HOM05D006913 ORTHO05D008720 5.3e-57 224.9 190 64.2
Sed0008492 Sechium edule HOM05D006913 ORTHO05D008720 5.3e-57 224.9 189 66.1
CiPaw.07G121500 Carya illinoinensis HOM05D006913 ORTHO05D008720 6.9e-57 224.6 151 76.8
CsaV3_7G030270 Cucumis sativus L. HOM05D006913 ORTHO05D008720 9.0e-57 224.2 151 76.8
QL12p018506 Quercus lobata HOM05D006913 ORTHO05D008720 1.2e-56 223.8 196 63.8
Migut.D00043 Erythranthe guttata HOM05D006913 ORTHO05D008720 1.5e-56 223.4 162 72.2
Cpa.g.c29544.2 Carica papaya HOM05D006913 ORTHO05D008720 2.0e-56 223.0 165 73.3
Manes.01G231800 Manihot esculenta HOM05D006913 ORTHO05D008720 2.0e-56 223.0 135 83.7
PSO170G2504 Papaver somniferum HOM05D006913 ORTHO05D008720 2.0e-56 223.0 138 79.0
PSO724G1078 Papaver somniferum HOM05D006913 ORTHO05D008720 2.6e-56 222.6 138 78.3
TPR.G4038 Trifolium pratense HOM05D006913 ORTHO05D008720 5.8e-56 221.5 154 72.1
MSTRG.21716 Avicennia marina HOM05D006913 ORTHO05D008720 7.6e-56 221.1 168 70.8
Hma1.2p1_0408F.1_g146440 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 7.6e-56 221.1 195 65.6
Sed0005932 Sechium edule HOM05D006913 ORTHO05D008720 1.3e-55 220.3 139 79.9
Aqoxy5G02741 Aquilegia oxysepala HOM05D006913 ORTHO05D008720 2.9e-55 219.2 134 82.8
PGSC0003DMG400007277 Solanum tuberosum HOM05D006913 ORTHO05D008720 2.9e-55 219.2 145 76.6
Dinv12109 Davidia involucrata HOM05D006913 ORTHO05D008720 4.9e-55 218.4 199 64.3
Glyma.19G219300 Glycine max HOM05D006913 ORTHO05D008720 8.4e-55 217.6 145 75.2
Solyc06g009400.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 8.4e-55 217.6 138 79.7
Sopen06g004130 Solanum pennellii HOM05D006913 ORTHO05D008720 8.4e-55 217.6 138 79.7
PGR083G1650 Punica granatum HOM05D006913 ORTHO05D008720 2.4e-54 216.1 162 72.2
Lj1g0024926 Lotus japonicus HOM05D006913 ORTHO05D008720 3.2e-54 215.7 146 76.7
CAN.G1280.40 Capsicum annuum HOM05D006913 ORTHO05D008720 4.2e-54 215.3 139 77.7
ClCG09G004810 Citrullus lanatus HOM05D006913 ORTHO05D008720 5.4e-54 214.9 219 58.9
MBI18_g09652_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 9.3e-54 214.2 163 69.3
MBI18_g11536_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 1.2e-53 213.8 163 69.9
Nitab4.5_0000363g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.2e-53 213.8 152 73.0
Nitab4.5_0003324g0110 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.6e-53 213.4 152 71.7
Sc05g0000220 Simmondsia chinensis HOM05D006913 ORTHO05D008720 1.6e-53 213.4 167 65.9
Psat3g018680 Pisum sativum HOM05D006913 ORTHO05D008720 2.1e-53 213.0 143 74.8
VMungo1383G0882 Vigna mungo HOM05D006913 ORTHO05D008720 2.7e-53 212.6 145 75.2
arahy.Tifrunner.gnm1.ann1.6PPK8V Arachis hypogaea HOM05D006913 ORTHO05D008720 4.6e-53 211.8 148 73.0
Dinv33147 Davidia involucrata HOM05D006913 ORTHO05D008720 1.0e-52 210.7 152 73.0
Lalb_Chr04g0260061 Lupinus albus HOM05D006913 ORTHO05D008720 1.3e-52 210.3 193 60.6
HPP92_002654 Vanilla planifolia HOM05D006913 ORTHO05D008720 1.3e-52 210.3 132 80.3
ATR0693G068 Amborella trichopoda HOM05D006913 ORTHO05D008720 1.1e-51 207.2 133 75.2
FAN26G0114 Fragaria x ananassa HOM05D006913 ORTHO05D008720 1.1e-51 207.2 225 55.6
Nitab4.5_0000222g0190 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.9e-51 206.5 144 72.2
FAN19G0677 Fragaria x ananassa HOM05D006913 ORTHO05D008720 2.5e-51 206.1 222 55.9
Glyma.03G222100 Glycine max HOM05D006913 ORTHO05D008720 4.3e-51 205.3 164 67.1
CiPaw.08G086000 Carya illinoinensis HOM05D006913 ORTHO05D008720 5.6e-51 204.9 190 63.2
Cc01_g21970 Coffea canephora HOM05D006913 ORTHO05D008720 7.4e-51 204.5 137 75.9
unitig_578.g16634 Utricularia gibba HOM05D006913 ORTHO05D008720 8.1e-50 201.1 194 57.7
Os05g0133100 Oryza sativa ssp. japonica HOM05D006913 ORTHO05D008720 2.4e-49 199.5 142 71.1
CDE11G0810 Ceratophyllum demersum HOM05D006913 ORTHO05D008720 3.1e-49 199.1 146 66.4
Sabra02G0164300 Salix brachista HOM05D006913 ORTHO05D008720 1.2e-48 197.2 234 51.7
Rhsim01G0292800 Rhododendron simsii HOM05D006913 ORTHO05D008720 1.5e-48 196.8 162 65.4
arahy.Tifrunner.gnm1.ann1.IRZ7G5 Arachis hypogaea HOM05D006913 ORTHO05D008720 2.0e-48 196.4 190 57.9
DCAR_002917 Daucus carota HOM05D006913 ORTHO05D008720 3.4e-48 195.7 181 59.7
Mapoly0061s0127 Marchantia polymorpha HOM05D006913 ORTHO05D008720 4.9e-47 191.8 123 74.0
Peaxi162Scf00058g00218 Petunia axillaris HOM05D006913 ORTHO05D008720 4.9e-47 191.8 138 73.2
Pp3c4_15530 Physcomitrium patens HOM05D006913 ORTHO05D008720 3.2e-46 189.1 151 64.9
COL.COLO4_23180 Corchorus olitorius HOM05D006913 ORTHO05D008720 1.3e-39 167.2 95 88.4
AUR62024592 Chenopodium quinoa HOM05D006913 ORTHO05D008720 2.9e-39 166.0 205 50.7
AagrBONN_evm.TU.Sc2ySwM_228.182 Anthoceros agrestis HOM05D006913 ORTHO05D008720 4.2e-38 162.2 114 69.3
Eucgr.H00899 Eucalyptus grandis HOM05D006913 ORTHO05D008720 7.1e-38 161.4 202 53.0
vmacro15097 Vaccinium macrocarpon HOM05D006913 ORTHO05D008720 2.1e-37 159.8 99 81.8
CARHR249910 Cardamine hirsuta HOM05D006913 ORTHO05D008720 2.7e-37 159.5 83 96.4
SGA_v2.0_scaffold80G25710 Striga asiatica HOM05D006913 ORTHO05D008720 2.7e-37 159.5 168 56.5
SEGI_19322 Sequoiadendron giganteum HOM05D006913 ORTHO05D008720 7.9e-37 157.9 113 70.8
Ca_09230_v3 Cicer arietinum L. HOM05D006913 ORTHO05D008720 1.3e-36 157.1 95 82.1
Solyc01g015000.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 8.7e-36 154.5 99 81.8
Lj1C13T3 Lonicera japonica HOM05D006913 ORTHO05D008720 7.4e-35 151.4 95 81.1
SMO364G0946 Selaginella moellendorffii HOM05D006913 ORTHO05D008720 7.4e-35 151.4 101 76.2
FAN23G2363 Fragaria x ananassa HOM05D000049 ORTHO05D000027 5.3e-33 145.2 99 76.8
Hund09668 Selenicereus undatus HOM05D006913 ORTHO05D008720 9.0e-33 144.4 153 58.2
Phvul.001G215500 Phaseolus vulgaris HOM05D006913 ORTHO05D008720 5.0e-31 138.7 91 73.6
Duzib211G0548 Durio zibethinus HOM05D006913 ORTHO05D008720 7.2e-30 134.8 106 67.0
Oeu038057.1 Olea europaea HOM05D006913 ORTHO05D008720 9.4e-30 134.4 198 44.4
Cre07.g357350 Chlamydomonas reinhardtii HOM05D006913 ORTHO05D008720 1.6e-29 133.7 132 50.8
MCO04G045 Micromonas commoda HOM05D006913 ORTHO05D008720 7.4e-27 124.8 119 52.9
Eucgr.L01805 Eucalyptus grandis HOM05D006913 ORTHO05D008720 6.9e-25 118.2 94 63.8
GSVIVG01010608001 Vitis vinifera HOM05D006913 ORTHO05D008720 2.6e-24 116.3 71 85.9
GSVIVG01037028001 Vitis vinifera HOM05D006913 ORTHO05D008720 2.6e-24 116.3 71 85.9
Nitab4.5_0001013g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 2.1e-21 106.7 75 66.7
HPP92_027922 Vanilla planifolia HOM05D006913 ORTHO05D008720 2.0e-19 100.1 68 70.6
HPP92_027923 Vanilla planifolia HOM05D006913 ORTHO05D008720 1.3e-18 97.4 63 79.4
Hma1.2p1_3252F.1_g334540 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 1.1e-17 94.4 71 70.4
Haze_27360 Corylus avellana HOM05D006913 ORTHO05D008720 1.8e-17 93.6 109 39.4
C09p01450 Brassica napus HOM05D006913 ORTHO05D008720 2.3e-12 76.6 39 92.3
BolC9t53077H Brassica oleracea HOM05D006913 ORTHO05D008720 2.3e-12 76.6 39 92.3


User provided reference genes

Program Settings