Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 3.3e-124 448.4 225 100.0
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.7e-112 409.5 228 93.0
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 1.5e-103 379.8 229 86.5
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.4e-100 368.6 227 82.8
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.6e-97 359.8 238 78.6
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.5e-97 358.6 238 78.2
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 4.6e-97 358.2 225 80.0
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 1.4e-85 320.1 224 74.6
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 1.5e-84 316.6 226 74.3
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 7.5e-84 314.3 232 72.4
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.5e-79 299.3 226 68.6
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.8e-70 269.2 164 82.9
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 4.0e-61 238.8 226 54.9
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 6.9e-61 238.0 186 63.4
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 6.9e-61 238.0 221 52.9
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 9.0e-61 237.7 196 60.7
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.5e-60 236.9 179 63.1
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.0e-60 236.5 186 62.4
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.0e-60 236.5 199 59.8
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.6e-60 236.1 183 62.3
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 2.6e-60 236.1 215 54.0
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 7.6e-60 234.6 224 54.9
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 7.6e-60 234.6 228 54.8
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 1.3e-59 233.8 228 53.5
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 1.3e-59 233.8 183 61.2
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.3e-59 233.8 189 61.9
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 1.7e-59 233.4 204 57.4
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.7e-59 233.4 192 60.9
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 2.2e-59 233.0 156 67.3
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.9e-59 232.6 222 52.7
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.9e-59 232.6 186 61.8
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 2.9e-59 232.6 224 54.0
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 4.9e-59 231.9 152 67.8
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 8.4e-59 231.1 194 58.2
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 8.4e-59 231.1 152 69.1
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 8.4e-59 231.1 158 65.2
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 1.1e-58 230.7 227 53.7
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 1.4e-58 230.3 164 64.6
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 1.9e-58 229.9 198 58.6
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.4e-58 229.6 186 59.7
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 4.2e-58 228.8 198 57.1
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 5.4e-58 228.4 168 60.7
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 7.1e-58 228.0 203 55.7
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 9.3e-58 227.6 168 62.5
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 9.3e-58 227.6 190 58.4
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 9.3e-58 227.6 151 66.2
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 9.3e-58 227.6 219 54.3
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 1.2e-57 227.3 219 53.9
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 1.2e-57 227.3 225 52.9
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.6e-57 226.9 157 61.1
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.1e-57 226.5 224 50.9
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.1e-57 226.5 163 65.6
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 2.7e-57 226.1 186 59.7
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 3.5e-57 225.7 220 52.7
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 7.9e-57 224.6 191 58.6
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 7.9e-57 224.6 198 56.6
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.3e-56 223.8 201 54.7
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 1.3e-56 223.8 219 53.4
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.7e-56 223.4 218 53.2
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.3e-56 223.0 149 65.8
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 2.3e-56 223.0 151 66.2
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.0e-56 222.6 224 50.0
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 3.0e-56 222.6 188 57.4
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 3.0e-56 222.6 223 50.2
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 3.9e-56 222.2 223 50.2
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.1e-55 220.7 159 62.3
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 1.1e-55 220.7 204 54.4
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 1.5e-55 220.3 231 52.4
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.9e-55 219.9 227 55.9
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 2.5e-55 219.5 162 60.5
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 3.3e-55 219.2 228 52.2
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 5.6e-55 218.4 145 65.5
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 5.6e-55 218.4 162 60.5
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 7.4e-55 218.0 161 62.1
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 7.4e-55 218.0 185 56.2
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 7.4e-55 218.0 151 66.9
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 9.6e-55 217.6 231 51.5
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 2.1e-54 216.5 149 65.8
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.4e-53 213.8 222 48.2
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 2.4e-53 213.0 194 53.6
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.1e-53 212.6 208 52.4
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 9.0e-53 211.1 200 54.0
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 9.0e-53 211.1 179 57.0
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.2e-52 210.7 188 56.4
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 3.4e-52 209.1 159 61.6
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 5.8e-52 208.4 141 63.1
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 2.2e-51 206.5 207 51.7
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 4.9e-51 205.3 139 65.5
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 2.4e-50 203.0 204 53.4
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 4.2e-50 202.2 150 59.3
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 9.3e-50 201.1 136 65.4
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 9.3e-50 201.1 144 62.5
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.6e-49 200.3 238 45.0
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.6e-49 200.3 131 67.9
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 2.7e-49 199.5 131 67.9
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 4.6e-49 198.7 211 51.7
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 6.0e-49 198.4 201 55.2
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 7.9e-49 198.0 209 51.2
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 7.9e-49 198.0 159 57.9
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 1.1e-47 194.1 148 71.6
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 3.3e-47 192.6 143 59.4
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.3e-47 192.6 193 51.3
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 5.6e-47 191.8 139 64.7
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 2.8e-46 189.5 155 56.8
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 2.8e-46 189.5 252 44.4
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 4.8e-46 188.7 187 49.7
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 2.4e-45 186.4 187 52.4
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 3.1e-45 186.0 143 60.1
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 5.3e-45 185.3 155 54.2
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 5.3e-45 185.3 239 42.7
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 6.9e-45 184.9 122 65.6
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 6.9e-45 184.9 179 50.3
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 6.9e-45 184.9 145 53.8
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.0e-44 183.3 155 54.2
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 2.6e-44 183.0 118 66.1
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 4.5e-44 182.2 202 47.5
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 2.2e-43 179.9 145 53.8
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 2.9e-43 179.5 171 52.0
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 4.9e-43 178.7 181 49.2
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 4.9e-43 178.7 200 48.0
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 1.1e-42 177.6 142 51.4
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.4e-42 177.2 146 52.7
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.4e-42 177.2 147 51.0
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 1.9e-42 176.8 213 44.1
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 1.9e-42 176.8 213 44.1
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 3.2e-42 176.0 213 43.2
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 3.2e-42 176.0 213 43.2
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.2e-42 176.0 146 52.1
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 2.7e-41 172.9 146 51.4
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 2.7e-41 172.9 146 51.4
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 3.5e-41 172.6 207 44.0
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 3.0e-40 169.5 146 50.7
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 1.9e-39 166.8 138 53.6
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 2.1e-38 163.3 218 42.7
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 6.3e-38 161.8 143 44.1
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.4e-37 159.8 106 67.0
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 6.9e-37 158.3 188 45.2
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 9.0e-37 157.9 136 56.6
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 2.6e-36 156.4 106 62.3
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 1.0e-35 154.5 126 53.2
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 1.3e-35 154.1 164 50.0
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.9e-35 152.9 91 70.3
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 8.4e-35 151.4 248 39.9
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.9e-34 150.2 91 70.3
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 1.6e-33 147.1 151 43.7
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 1.1e-31 141.0 139 53.2
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 5.7e-31 138.7 163 47.2
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 2.2e-30 136.7 115 67.0
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 9.0e-29 131.3 118 62.7
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 2.6e-28 129.8 98 57.1
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 2.9e-27 126.3 103 59.2
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 5.0e-27 125.6 152 42.8
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 4.2e-26 122.5 116 61.2
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 1.6e-25 120.6 143 47.6
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 2.1e-25 120.2 81 65.4
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 1.0e-24 117.9 116 60.3
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 1.8e-24 117.1 142 45.8
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 2.3e-24 116.7 64 73.4
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 3.9e-24 115.9 137 37.2
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 2.5e-23 113.2 152 42.8
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 1.8e-21 107.1 148 37.2
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 2.0e-20 103.6 65 66.2
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 1.0e-16 91.3 116 46.6
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 2.0e-12 77.0 57 64.9
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 2.6e-12 76.6 85 45.9
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 1.2e-09 67.8 48 64.6
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 3.6e-09 66.2 81 44.4
Carub.0007s2768 Capsella rubella HOM05D004068 ORTHO05D004700 4.0e-08 62.8 44 75.0
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 2.0e-07 60.5 83 42.2
Cre09.g400627 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D138886 4.8e-06 55.8 140 23.6


User provided reference genes

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