Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G01790 Arabidopsis thaliana HOM05D006977 ORTHO05D008738 3.8e-88 328.2 168 100.0
AL6G51510 Arabidopsis lyrata HOM05D006977 ORTHO05D008738 1.2e-78 296.6 172 90.1
Carub.0006s3543 Capsella rubella HOM05D006977 ORTHO05D008738 3.3e-76 288.5 173 88.4
CARHR249760 Cardamine hirsuta HOM05D006977 ORTHO05D008738 1.5e-73 279.6 169 84.6
Thhalv10029024m.g Eutrema salsugineum HOM05D006977 ORTHO05D008738 3.8e-72 275.0 170 87.6
Sp3g31270 Schrenkiella parvula HOM05D006977 ORTHO05D008738 6.0e-70 267.7 168 83.9
SpUn0082_0020 Schrenkiella parvula HOM05D006977 ORTHO05D008738 6.0e-70 267.7 168 83.9
BolC3t16121H Brassica oleracea HOM05D006977 ORTHO05D008738 5.1e-69 264.6 165 84.2
BraA03t12329Z Brassica rapa HOM05D006977 ORTHO05D008738 4.3e-68 261.5 166 82.5
C03p38480 Brassica napus HOM05D006977 ORTHO05D008738 5.7e-68 261.2 166 82.5
BcaB01g02378 Brassica carinata HOM05D006977 ORTHO05D008738 1.7e-64 249.6 154 83.1
BcaC01g06803 Brassica carinata HOM05D006977 ORTHO05D008738 5.0e-64 248.1 147 87.8
A03p31490 Brassica napus HOM05D006977 ORTHO05D008738 5.5e-63 244.6 147 86.4
Aa31LG5G1570 Aethionema arabicum HOM05D006977 ORTHO05D008738 5.9e-57 224.6 157 73.2
THA.LOC104799825 Tarenaya hassleriana HOM05D006977 ORTHO05D008738 8.5e-56 220.7 167 69.5
Cpa.g.sc112.76 Carica papaya HOM05D006977 ORTHO05D008738 1.1e-42 177.2 153 60.8
Cpa.g.sc57.16 Carica papaya HOM05D006977 ORTHO05D008738 4.1e-42 175.3 154 57.8
Cfa004914 Carpinus fangiana HOM05D006977 ORTHO05D008738 2.6e-41 172.6 164 54.3
Thecc.01G325400 Theobroma cacao HOM05D006977 ORTHO05D008738 3.5e-41 172.2 158 55.7
COL.COLO4_23128 Corchorus olitorius HOM05D006977 ORTHO05D008738 1.0e-40 170.6 153 57.5
Sp6g01640 Schrenkiella parvula HOM05D006977 ORTHO05D008738 1.3e-40 170.2 108 82.4
Haze_05149 Corylus avellana HOM05D006977 ORTHO05D008738 2.2e-40 169.5 164 54.3
Atru.chr5.861 Acer truncatum HOM05D006977 ORTHO05D008738 5.0e-40 168.3 169 52.7
Duzib133G0680 Durio zibethinus HOM05D006977 ORTHO05D008738 1.9e-39 166.4 153 52.9
Gohir.A11G104700 Gossypium hirsutum HOM05D006977 ORTHO05D008738 4.2e-39 165.2 148 55.4
Gohir.D11G109500 Gossypium hirsutum HOM05D006977 ORTHO05D008738 4.2e-39 165.2 148 56.1
Gorai.007G117100 Gossypium raimondii HOM05D006977 ORTHO05D008738 4.2e-39 165.2 148 56.1
ClCG01G007180 Citrullus lanatus HOM05D006977 ORTHO05D008738 5.5e-39 164.9 151 58.3
QL05p057365 Quercus lobata HOM05D006977 ORTHO05D008738 9.4e-39 164.1 160 54.4
Lalb_Chr11g0071671 Lupinus albus HOM05D006977 ORTHO05D008738 1.6e-38 163.3 171 51.5
MD09G1290400 Malus domestica HOM05D006977 ORTHO05D008738 2.1e-38 162.9 146 56.2
TWI81G0461 Tripterygium wilfordii HOM05D006977 ORTHO05D008738 2.7e-38 162.5 151 55.6
Sed0019401 Sechium edule HOM05D006977 ORTHO05D008738 3.6e-38 162.2 149 58.4
Ciclev10022352m.g Citrus clementina HOM05D006977 ORTHO05D008738 4.7e-38 161.8 158 55.7
Glyma.10G137900 Glycine max HOM05D006977 ORTHO05D008738 4.7e-38 161.8 156 51.3
Manes.05G008900 Manihot esculenta HOM05D006977 ORTHO05D008738 6.1e-38 161.4 158 51.3
Psat7g015240 Pisum sativum HOM05D006977 ORTHO05D008738 8.0e-38 161.0 170 50.0
Ca_17328_v3 Cicer arietinum L. HOM05D006977 ORTHO05D008738 1.4e-37 160.2 171 50.9
Duzib268G1723 Durio zibethinus HOM05D006977 ORTHO05D008738 1.8e-37 159.8 153 54.2
Phvul.L002843 Phaseolus vulgaris HOM05D006977 ORTHO05D008738 1.8e-37 159.8 157 52.9
HPP92_012764 Vanilla planifolia HOM05D006977 ORTHO05D008738 2.3e-37 159.5 154 54.5
CiPaw.08G082500 Carya illinoinensis HOM05D006977 ORTHO05D008738 3.0e-37 159.1 165 52.7
Glyma.04G053700 Glycine max HOM05D006977 ORTHO05D008738 3.0e-37 159.1 156 51.3
MSTRG.6995 Avicennia marina HOM05D006977 ORTHO05D008738 8.8e-37 157.5 166 50.6
CsaV3_5G018620 Cucumis sativus L. HOM05D006977 ORTHO05D008738 8.8e-37 157.5 149 57.7
Dinv12080 Davidia involucrata HOM05D006977 ORTHO05D008738 8.8e-37 157.5 155 52.9
RcHm_v2.0_Chr3g0485771 Rosa chinensis HOM05D006977 ORTHO05D008738 1.1e-36 157.1 156 54.5
FAN23G2129 Fragaria x ananassa HOM05D006977 ORTHO05D008738 2.6e-36 156.0 160 53.1
Lsat_1_v5_gn_7_107761 Lactuca sativa HOM05D006977 ORTHO05D008738 3.3e-36 155.6 165 48.5
Prupe.3G002600 Prunus persica HOM05D006977 ORTHO05D008738 4.4e-36 155.2 151 53.6
Cc04_g01560 Coffea canephora HOM05D006977 ORTHO05D008738 5.7e-36 154.8 179 46.9
VMungo0720G2811 Vigna mungo HOM05D006977 ORTHO05D008738 5.7e-36 154.8 158 50.0
Lj5g0006261 Lotus japonicus HOM05D006977 ORTHO05D008738 7.5e-36 154.5 159 50.9
MELO3C005192.2 Cucumis melo HOM05D006977 ORTHO05D008738 9.7e-36 154.1 148 56.8
Sabra14G0082500 Salix brachista HOM05D006977 ORTHO05D008738 9.7e-36 154.1 153 52.9
FAN26G0658 Fragaria x ananassa HOM05D006977 ORTHO05D008738 1.3e-35 153.7 164 51.2
FAN19G2776 Fragaria x ananassa HOM05D006977 ORTHO05D008738 1.7e-35 153.3 160 51.2
TAR362G0624 Trochodendron aralioides HOM05D006977 ORTHO05D008738 2.2e-35 152.9 155 51.0
Potri.014G112200 Populus trichocarpa HOM05D006977 ORTHO05D008738 3.7e-35 152.1 145 53.8
GSVIVG01028248001 Vitis vinifera HOM05D006977 ORTHO05D008738 3.7e-35 152.1 172 51.2
Actinidia25872 Actinidia chinensis HOM05D006977 ORTHO05D008738 6.3e-35 151.4 166 48.8
Duzib268G1378 Durio zibethinus HOM05D006977 ORTHO05D008738 6.3e-35 151.4 131 56.5
Eucgr.A01003 Eucalyptus grandis HOM05D006977 ORTHO05D008738 6.3e-35 151.4 170 47.1
PGR042G1466 Punica granatum HOM05D006977 ORTHO05D008738 8.2e-35 151.0 171 48.0
Medtr8g103265 Medicago truncatula HOM05D006977 ORTHO05D008738 1.1e-34 150.6 157 49.7
Sc02g0004000 Simmondsia chinensis HOM05D006977 ORTHO05D008738 1.4e-34 150.2 184 45.1
Hund02455 Selenicereus undatus HOM05D006977 ORTHO05D008738 1.8e-34 149.8 164 48.2
ECA236G2063 Erigeron canadensis HOM05D006977 ORTHO05D008738 2.4e-34 149.4 166 48.2
PGSC0003DMG400001120 Solanum tuberosum HOM05D006977 ORTHO05D008738 4.1e-34 148.7 153 49.7
Oeu031543.1 Olea europaea HOM05D006977 ORTHO05D008738 7.0e-34 147.9 165 51.5
FAN28G2841 Fragaria x ananassa HOM05D006977 ORTHO05D008738 1.2e-33 147.1 155 51.6
Solyc01g080830.3 Solanum lycopersicum HOM05D006977 ORTHO05D008738 1.2e-33 147.1 153 49.7
DCAR_012297 Daucus carota HOM05D006977 ORTHO05D008738 2.0e-33 146.4 169 48.5
Nn4g24845 Nelumbo nucifera HOM05D006977 ORTHO05D008738 2.0e-33 146.4 172 47.7
PSO357G0421 Papaver somniferum HOM05D006977 ORTHO05D008738 2.7e-33 146.0 150 53.3
CSS0050251 Camellia sinensis var. sinensis HOM05D006977 ORTHO05D008738 3.5e-33 145.6 158 46.2
MBI19_g30288_MAGBIO Magnolia biondii HOM05D006977 ORTHO05D008738 5.9e-33 144.8 149 49.7
PSO170G4516 Papaver somniferum HOM05D006977 ORTHO05D008738 5.9e-33 144.8 150 52.0
arahy.Tifrunner.gnm1.ann1.KP3I1I Arachis hypogaea HOM05D006977 ORTHO05D008738 1.3e-32 143.7 154 50.6
arahy.Tifrunner.gnm1.ann1.PT1J72 Arachis hypogaea HOM05D006977 ORTHO05D008738 1.3e-32 143.7 143 53.1
Migut.M01655 Erythranthe guttata HOM05D006977 ORTHO05D008738 1.3e-32 143.7 150 50.7
HanXRQChr15g0493961 Helianthus annuus HOM05D006977 ORTHO05D008738 1.7e-32 143.3 151 49.7
Rhsim01G0293500 Rhododendron simsii HOM05D006977 ORTHO05D008738 2.2e-32 142.9 155 46.5
Hma1.2p1_0484F.1_g162990 Hydrangea macrophylla HOM05D006977 ORTHO05D008738 5.0e-32 141.7 163 47.2
Sopen01g030650 Solanum pennellii HOM05D006977 ORTHO05D008738 6.5e-32 141.4 136 52.2
ATR0796G043 Amborella trichopoda HOM05D006977 ORTHO05D008738 4.2e-31 138.7 176 43.2
FvH4_1g26230 Fragaria vesca HOM05D006977 ORTHO05D008738 1.2e-30 137.1 153 48.4
AUR62007556 Chenopodium quinoa HOM05D006977 ORTHO05D008738 1.6e-30 136.7 165 44.8
Duzib268G1823 Durio zibethinus HOM05D006977 ORTHO05D008738 2.1e-30 136.3 131 54.2
AUR62020194 Chenopodium quinoa HOM05D006977 ORTHO05D008738 3.6e-30 135.6 150 46.0
Zm00001eb328690 Zea mays HOM05D006977 ORTHO05D008738 8.0e-30 134.4 162 46.3
Os07g0636400 Oryza sativa ssp. japonica HOM05D006977 ORTHO05D008738 1.0e-29 134.0 156 46.2
Aqoxy5G02822 Aquilegia oxysepala HOM05D006977 ORTHO05D008738 1.4e-29 133.7 145 48.3
CANSAT25G0488 Cannabis sativa HOM05D006977 ORTHO05D008738 1.8e-29 133.3 126 57.9
CAN.G100.60 Capsicum annuum HOM05D006977 ORTHO05D008738 2.0e-28 129.8 110 54.5
SalBow5G4120 Salvia bowleyana HOM05D006977 ORTHO05D008738 2.6e-28 129.4 138 47.8
Peaxi162Scf00309g00082 Petunia axillaris HOM05D006977 ORTHO05D008738 9.8e-28 127.5 122 51.6
EL10Ac6g15579 Beta vulgaris HOM05D006977 ORTHO05D008738 3.7e-27 125.6 177 39.0
vmacro15094 Vaccinium macrocarpon HOM05D006977 ORTHO05D008738 1.4e-26 123.6 136 44.9
CiPaw.07G125600 Carya illinoinensis HOM05D006977 ORTHO05D008738 2.4e-26 122.9 157 47.8
Lj1A7G42 Lonicera japonica HOM05D006977 ORTHO05D008738 1.6e-25 120.2 114 53.5
TPR.G23504 Trifolium pratense HOM05D006977 ORTHO05D008738 2.0e-25 119.8 119 49.6
SGA_v2.0_scaffold204G41642 Striga asiatica HOM05D006977 ORTHO05D008738 1.3e-24 117.1 156 43.6
Nitab4.5_0003092g0050 Nicotiana tabacum HOM05D006977 ORTHO05D008738 2.9e-24 115.9 132 45.5
unitig_8.g4039 Utricularia gibba HOM05D006977 ORTHO05D008738 1.5e-23 113.6 159 40.9
Nitab4.5_0000222g0410 Nicotiana tabacum HOM05D006977 ORTHO05D008738 6.8e-21 104.8 96 52.1
MD17G1285100 Malus domestica HOM05D006977 ORTHO05D008738 4.1e-18 95.5 74 56.8
CDE02G1393 Ceratophyllum demersum HOM05D006977 ORTHO05D008738 2.9e-16 89.4 72 56.9
CDE04G2744 Ceratophyllum demersum HOM05D006977 ORTHO05D008738 5.4e-10 68.6 62 61.3
Pp3c20_22530 Physcomitrium patens HOM05D006977 ORTHO05D008738 3.0e-08 62.8 135 34.8
Duzib138G1646 Durio zibethinus HOM05D006977 ORTHO05D008738 5.0e-08 62.0 64 50.0
Mapoly0147s0029 Marchantia polymorpha HOM05D006977 ORTHO05D008738 1.1e-07 60.8 129 31.8


User provided reference genes

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