Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G01395 Arabidopsis thaliana HOM05D002391 ORTHO05D004870 0.0e+00 1431.4 739 100.0
Sp6g01350 Schrenkiella parvula HOM05D002391 ORTHO05D004870 0.0e+00 1374.8 738 96.2
AL6G52005 Arabidopsis lyrata HOM05D002391 ORTHO05D004870 0.0e+00 1371.3 739 95.9
Thhalv10028369m.g Eutrema salsugineum HOM05D002391 ORTHO05D004870 0.0e+00 1364.0 738 95.1
A03p31630 Brassica napus HOM05D002391 ORTHO05D004870 0.0e+00 1359.4 738 95.1
C03p38630 Brassica napus HOM05D002391 ORTHO05D004870 0.0e+00 1359.0 738 95.1
BolC3t16136H Brassica oleracea HOM05D002391 ORTHO05D004870 0.0e+00 1359.0 738 95.1
BraA03t12339Z Brassica rapa HOM05D002391 ORTHO05D004870 0.0e+00 1358.2 738 95.0
CARHR250280 Cardamine hirsuta HOM05D002391 ORTHO05D004870 0.0e+00 1357.4 738 95.1
Carub.0006s3580 Capsella rubella HOM05D002391 ORTHO05D004870 0.0e+00 1355.9 739 94.6
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 0.0e+00 1351.7 738 94.3
BcaC01g06822 Brassica carinata HOM05D002391 ORTHO05D004870 0.0e+00 1316.6 713 95.1
THA.LOC104815894 Tarenaya hassleriana HOM05D002391 ORTHO05D004870 0.0e+00 1299.3 739 89.2
Manes.01G239800 Manihot esculenta HOM05D002391 ORTHO05D004870 0.0e+00 1194.9 726 82.6
Atru.chr5.768 Acer truncatum HOM05D002391 ORTHO05D004870 0.0e+00 1190.3 736 81.9
Ciclev10018998m.g Citrus clementina HOM05D002391 ORTHO05D004870 0.0e+00 1185.6 727 82.7
COL.COLO4_31148 Corchorus olitorius HOM05D002391 ORTHO05D004870 0.0e+00 1184.1 727 82.0
CANSAT56G4423 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1182.5 733 81.7
Potri.002G179600 Populus trichocarpa HOM05D002391 ORTHO05D004870 0.0e+00 1177.9 743 80.9
Duzib235G0384 Durio zibethinus HOM05D002391 ORTHO05D004870 0.0e+00 1176.8 744 79.8
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 0.0e+00 1174.1 737 80.7
Haze_15735 Corylus avellana HOM05D002391 ORTHO05D004870 0.0e+00 1173.3 744 80.0
Cfa003734 Carpinus fangiana HOM05D002391 ORTHO05D004870 0.0e+00 1172.1 745 79.7
CANSAT56G4076 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1167.1 730 81.0
Nn2g14439 Nelumbo nucifera HOM05D002391 ORTHO05D004870 0.0e+00 1166.8 726 81.3
CsaV3_6G008330 Cucumis sativus L. HOM05D002391 ORTHO05D004870 0.0e+00 1166.0 743 79.9
Sabra02G0134300 Salix brachista HOM05D002391 ORTHO05D004870 0.0e+00 1165.6 743 79.8
ClCG06G002280 Citrullus lanatus HOM05D002391 ORTHO05D004870 0.0e+00 1164.8 743 79.8
Gorai.005G122300 Gossypium raimondii HOM05D002391 ORTHO05D004870 0.0e+00 1164.4 740 80.1
CiPaw.01G082500 Carya illinoinensis HOM05D002391 ORTHO05D004870 0.0e+00 1163.3 741 78.4
TAR629G2316 Trochodendron aralioides HOM05D002391 ORTHO05D004870 0.0e+00 1163.3 726 81.1
TWI14G1409 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 0.0e+00 1161.7 737 80.5
MELO3C022305.2 Cucumis melo HOM05D002391 ORTHO05D004870 0.0e+00 1161.0 742 79.8
Sed0000252 Sechium edule HOM05D002391 ORTHO05D004870 0.0e+00 1160.2 731 80.0
Gohir.A02G090600 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1157.1 740 79.6
Actinidia08007 Actinidia chinensis HOM05D002391 ORTHO05D004870 0.0e+00 1152.5 733 79.7
arahy.Tifrunner.gnm1.ann1.SI3K9E Arachis hypogaea HOM05D002391 ORTHO05D004870 0.0e+00 1150.6 734 79.4
arahy.Tifrunner.gnm1.ann1.E8X9SV Arachis hypogaea HOM05D002391 ORTHO05D004870 0.0e+00 1148.7 734 79.2
Gorai.010G141700 Gossypium raimondii HOM05D002391 ORTHO05D004870 0.0e+00 1146.3 735 78.9
Gohir.D06G121400 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1145.2 735 78.9
Phvul.009G257900 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 0.0e+00 1144.4 741 78.8
Phvul.009G254600 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 0.0e+00 1141.3 741 78.8
Prupe.2G092100 Prunus persica HOM05D002391 ORTHO05D004870 0.0e+00 1141.3 733 78.4
FAN03G0415 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1140.2 732 78.6
Thecc.06G056400 Theobroma cacao HOM05D002391 ORTHO05D004870 0.0e+00 1139.8 744 78.1
vmacro13188 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 0.0e+00 1139.8 727 79.4
FAN06G0341 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1138.6 732 78.6
QL08p047248 Quercus lobata HOM05D002391 ORTHO05D004870 0.0e+00 1138.6 731 78.7
VMungo1309G0406 Vigna mungo HOM05D002391 ORTHO05D004870 0.0e+00 1138.6 741 78.4
Prupe.2G197800 Prunus persica HOM05D002391 ORTHO05D004870 0.0e+00 1137.1 731 78.0
FAN06G0379 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1136.7 732 78.4
Aqoxy5G01515 Aquilegia oxysepala HOM05D002391 ORTHO05D004870 0.0e+00 1135.9 723 80.4
Lalb_Chr18g0044711 Lupinus albus HOM05D002391 ORTHO05D004870 0.0e+00 1135.6 729 79.0
FvH4_7g17670 Fragaria vesca HOM05D002391 ORTHO05D004870 0.0e+00 1135.2 740 77.7
FAN10G4291 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1135.2 732 78.4
Eucgr.B02196 Eucalyptus grandis HOM05D002391 ORTHO05D004870 0.0e+00 1134.8 726 79.2
Hma1.2p1_0074F.1_g038740 Hydrangea macrophylla HOM05D002391 ORTHO05D004870 0.0e+00 1134.4 745 77.6
TPR.G4730 Trifolium pratense HOM05D002391 ORTHO05D004870 0.0e+00 1134.0 728 79.0
FAN10G1672 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1133.2 732 78.1
Glyma.03G261100 Glycine max HOM05D002391 ORTHO05D004870 0.0e+00 1132.9 744 78.2
Lj5g0026855 Lotus japonicus HOM05D002391 ORTHO05D004870 0.0e+00 1132.5 737 78.0
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 0.0e+00 1132.1 740 77.8
FAN01G3049 Fragaria x ananassa HOM05D002391 ORTHO05D004870 0.0e+00 1131.7 732 77.7
Psat0s3525g0040 Pisum sativum HOM05D002391 ORTHO05D004870 0.0e+00 1131.3 730 79.3
Ca_09546_v3 Cicer arietinum L. HOM05D002391 ORTHO05D004870 0.0e+00 1127.5 744 77.7
PGR031G3302 Punica granatum HOM05D002391 ORTHO05D004870 0.0e+00 1127.5 736 77.6
Medtr7g118220 Medicago truncatula HOM05D002391 ORTHO05D004870 0.0e+00 1126.3 728 78.4
Glyma.19G260100 Glycine max HOM05D002391 ORTHO05D004870 0.0e+00 1125.2 725 79.0
Lsat_1_v5_gn_4_41841 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1123.6 724 78.3
Dinv31611 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1119.0 742 77.0
Lsat_1_v5_gn_3_17681 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1111.7 724 77.6
Gohir.D02G107800 Gossypium hirsutum HOM05D002391 ORTHO05D004870 0.0e+00 1107.8 740 77.0
HanXRQChr16g0520851 Helianthus annuus HOM05D002391 ORTHO05D004870 0.0e+00 1100.1 724 76.4
Migut.B01922 Erythranthe guttata HOM05D002391 ORTHO05D004870 0.0e+00 1099.0 743 76.9
Dinv32645 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1096.6 716 77.5
SGA_v2.0_scaffold12G06269 Striga asiatica HOM05D002391 ORTHO05D004870 0.0e+00 1091.6 741 76.0
MSTRG.17383 Avicennia marina HOM05D002391 ORTHO05D004870 0.0e+00 1087.4 733 76.1
PSO170G3053 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1087.4 725 76.3
PSO017G7365 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1087.0 725 76.3
PSO339G3919 Papaver somniferum HOM05D002391 ORTHO05D004870 0.0e+00 1086.2 725 76.1
CAN.G585.49 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1083.9 741 75.3
CAN.G1209.27 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1082.8 738 75.2
DCAR_032252 Daucus carota HOM05D002391 ORTHO05D004870 0.0e+00 1082.4 743 75.0
MD07G1159900 Malus domestica HOM05D002391 ORTHO05D004870 0.0e+00 1082.4 731 75.6
Sopen07g029360 Solanum pennellii HOM05D002391 ORTHO05D004870 0.0e+00 1081.6 731 75.8
Hund24710 Selenicereus undatus HOM05D002391 ORTHO05D004870 0.0e+00 1079.3 733 74.6
Solyc07g056010.3 Solanum lycopersicum HOM05D002391 ORTHO05D004870 0.0e+00 1078.2 731 75.5
PGSC0003DMG401031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 0.0e+00 1076.6 729 75.6
Peaxi162Scf00028g00124 Petunia axillaris HOM05D002391 ORTHO05D004870 2.0e-311 1072.0 739 74.7
CDE11G0036 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 8.5e-310 1066.6 739 72.4
Ah.08g211620 Amaranthus hybridus HOM05D002391 ORTHO05D004870 2.5e-309 1065.1 730 73.8
SalBow3G2598 Salvia bowleyana HOM05D002391 ORTHO05D004870 7.2e-309 1063.5 766 72.6
SalBow3G4592 Salvia bowleyana HOM05D002391 ORTHO05D004870 7.2e-309 1063.5 766 72.6
Nitab4.5_0003682g0020 Nicotiana tabacum HOM05D002391 ORTHO05D004870 2.7e-308 1061.6 721 75.2
ATR0697G195 Amborella trichopoda HOM05D002391 ORTHO05D004870 2.4e-304 1048.5 727 72.5
Sc20g0005510 Simmondsia chinensis HOM05D002391 ORTHO05D004870 3.1e-304 1048.1 741 72.1
Lj9A607T84 Lonicera japonica HOM05D002391 ORTHO05D004870 4.5e-303 1044.3 676 78.6
MBI12_g09288_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 4.2e-301 1037.7 747 72.8
HPP92_001559 Vanilla planifolia HOM05D002391 ORTHO05D004870 1.8e-296 1022.3 745 69.7
SEGI_26155 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 5.9e-295 1017.3 748 67.5
Lalb_Chr15g0076531 Lupinus albus HOM05D002391 ORTHO05D004870 1.0e-294 1016.5 727 71.3
SEGI_23282 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 4.2e-293 1011.1 748 67.2
ECA234G3070 Erigeron canadensis HOM05D002391 ORTHO05D004870 1.0e-291 1006.5 721 69.9
GSVIVG01027440001 Vitis vinifera HOM05D002391 ORTHO05D004870 7.5e-290 1000.3 735 70.7
EL10Ac7g16621 Beta vulgaris HOM05D002391 ORTHO05D004870 1.3e-286 989.6 756 68.3
BcaB05g23972 Brassica carinata HOM05D002391 ORTHO05D004870 5.6e-285 984.2 738 73.6
Nitab4.5_0003729g0040 Nicotiana tabacum HOM05D002391 ORTHO05D004870 4.7e-284 981.1 720 71.4
AUR62042494 Chenopodium quinoa HOM05D002391 ORTHO05D004870 1.5e-282 976.1 664 74.4
unitig_899.g15596 Utricularia gibba HOM05D002391 ORTHO05D004870 4.6e-279 964.5 710 70.7
Cc06_g20470 Coffea canephora HOM05D002391 ORTHO05D004870 1.7e-278 962.6 737 68.5
AUR62040015 Chenopodium quinoa HOM05D002391 ORTHO05D004870 1.5e-277 959.5 662 73.4
ECA234G2472 Erigeron canadensis HOM05D002391 ORTHO05D004870 4.6e-271 937.9 724 65.3
Oeu007915.2 Olea europaea HOM05D002391 ORTHO05D004870 1.1e-259 900.2 745 65.0
Mapoly0151s0016 Marchantia polymorpha HOM05D002391 ORTHO05D004870 1.1e-253 880.2 726 60.6
SMO364G0412 Selaginella moellendorffii HOM05D002391 ORTHO05D004870 3.2e-248 862.1 726 59.9
Pp3c17_20140 Physcomitrium patens HOM05D002391 ORTHO05D004870 7.8e-247 857.4 737 58.9
Manes.05G016350 Manihot esculenta HOM05D002391 ORTHO05D004870 3.9e-238 828.6 725 64.8
Gohir.A06G116700 Gossypium hirsutum HOM05D002391 ORTHO05D004870 1.8e-235 819.7 567 73.9
unitig_21.g20038 Utricularia gibba HOM05D002391 ORTHO05D004870 3.2e-224 782.3 644 64.8
MD07G1159800 Malus domestica HOM05D002391 ORTHO05D004870 3.1e-219 765.8 519 75.0
CBR_g6290 Chara braunii HOM05D002391 ORTHO05D004870 5.5e-208 728.4 867 46.5
Rhsim07G0007000 Rhododendron simsii HOM05D002391 ORTHO05D004870 1.1e-205 720.7 546 69.2
RcHm_v2.0_Chr1g0334511 Rosa chinensis HOM05D002391 ORTHO05D004870 1.5e-202 710.3 435 83.0
A03p50140 Brassica napus HOM05D002391 ORTHO05D004870 4.0e-190 669.1 389 89.5
Carub.0003s2971 Capsella rubella HOM05D002391 ORTHO05D004870 1.7e-185 653.7 782 51.8
TAR636G0053 Trochodendron aralioides HOM05D002391 ORTHO05D004870 1.0e-182 644.4 386 83.9
PSO302G0149 Papaver somniferum HOM05D002391 ORTHO05D004870 3.0e-174 616.3 413 75.8
MD07G1159700 Malus domestica HOM05D002391 ORTHO05D004870 4.4e-165 585.9 330 87.9
AagrBONN_evm.TU.Sc2ySwM_344.5215 Anthoceros agrestis HOM05D002391 ORTHO05D004870 1.6e-159 567.4 534 55.8
CDE02G1610 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 3.9e-153 546.2 737 45.6
Os02g0456000 Oryza sativa ssp. japonica HOM05D002391 ORTHO05D004870 3.9e-153 546.2 546 55.3
Zm00001eb402340 Zea mays HOM05D002391 ORTHO05D004870 4.6e-146 522.7 529 54.8
vmacro23330 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 6.2e-135 485.7 328 77.1
PRCOL_00002903 Prasinoderma coloniale HOM05D002391 ORTHO05D004870 1.4e-134 484.6 737 37.7
CAN.G732.5 Capsicum annuum HOM05D002391 ORTHO05D004870 1.8e-134 484.2 357 69.5
Zm00001eb005370 Zea mays HOM05D002391 ORTHO05D004870 2.4e-134 483.8 507 53.6
BraA03t14107Z Brassica rapa HOM05D002391 ORTHO05D004870 1.9e-131 474.2 270 90.0
A05p28430 Brassica napus HOM05D002391 ORTHO05D004870 2.3e-129 467.2 266 91.0
BraA05t21723Z Brassica rapa HOM05D002391 ORTHO05D004870 8.7e-129 465.3 266 90.6
TAR636G3264 Trochodendron aralioides HOM05D002391 ORTHO05D004870 5.8e-125 452.6 296 77.4
Cre06.g287250 Chlamydomonas reinhardtii HOM05D002391 ORTHO05D004870 4.6e-122 443.0 834 33.3
A08p28600 Brassica napus HOM05D002391 ORTHO05D004870 3.3e-112 410.2 235 90.2
vmacro13197 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 7.4e-112 409.1 495 50.9
BraA02t04916Z Brassica rapa HOM05D002391 ORTHO05D004870 3.1e-110 403.7 232 89.7
BraA02t08770Z Brassica rapa HOM05D002391 ORTHO05D004870 3.1e-110 403.7 232 89.7
DCAR_022118 Daucus carota HOM05D002391 ORTHO05D004870 1.9e-107 394.4 304 68.4
Cpa.g.sc193.14 Carica papaya HOM05D002391 ORTHO05D004870 9.7e-104 382.1 210 90.0
RcHm_v2.0_Chr1g0334501 Rosa chinensis HOM05D002391 ORTHO05D004870 9.7e-104 382.1 272 70.6
A07p33310 Brassica napus HOM05D002391 ORTHO05D004870 2.8e-103 380.6 243 82.3
MBI12_g48127_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 2.4e-94 350.9 415 52.0
PGSC0003DMG402031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 5.7e-88 329.7 184 88.0
CAN.G732.6 Capsicum annuum HOM05D002391 ORTHO05D004870 1.6e-85 321.6 190 83.2
C02p38430 Brassica napus HOM05D002391 ORTHO05D017667 3.1e-62 244.2 157 80.9
BolC2t09861H Brassica oleracea HOM05D002391 ORTHO05D017667 7.8e-53 213.0 126 87.3
HanXRQChr05g0132281 Helianthus annuus HOM05D002391 ORTHO05D004870 6.8e-49 199.9 123 78.9
FvH4_4g00571 Fragaria vesca HOM05D002391 ORTHO05D004870 8.9e-49 199.5 149 68.5
Dinv08357 Davidia involucrata HOM05D002391 ORTHO05D004870 4.4e-48 197.2 187 56.1
Actinidia33035 Actinidia chinensis HOM05D002391 ORTHO05D004870 6.4e-47 193.4 120 81.7
BcaC03g16083 Brassica carinata HOM05D002391 ORTHO05D017667 5.0e-44 183.7 112 85.7
FvH4_5g29942 Fragaria vesca HOM05D002391 ORTHO05D017667 3.3e-43 181.0 216 48.1
Cfa025151 Carpinus fangiana HOM05D002391 ORTHO05D004870 3.9e-36 157.5 800 21.6
BcaC01g02750 Brassica carinata HOM05D002391 ORTHO05D004870 1.6e-34 152.1 143 66.4
ECA246G0062 Erigeron canadensis HOM05D002391 ORTHO05D004870 1.7e-31 142.1 96 74.0
MBI12_g48128_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 1.9e-27 128.6 82 78.0
C03p60940 Brassica napus HOM05D002391 ORTHO05D004870 3.2e-22 111.3 81 76.5
BolC3t18356H Brassica oleracea HOM05D002391 ORTHO05D004870 3.2e-22 111.3 81 76.5
QL11p025959 Quercus lobata HOM05D002391 ORTHO05D004870 2.5e-19 101.7 260 34.6
TPR.G25208 Trifolium pratense HOM05D002391 ORTHO05D004870 7.3e-19 100.1 82 68.3
QL08p036835 Quercus lobata HOM05D000041 ORTHO05D000061 1.6e-18 99.0 73 64.4
FAN18G2005 Fragaria x ananassa HOM05D002391 ORTHO05D017667 1.4e-17 95.9 69 63.8
TPR.G22870 Trifolium pratense HOM05D002391 ORTHO05D011575 1.8e-17 95.5 105 53.3
QL06p008100 Quercus lobata HOM05D000161 ORTHO05D000111 3.4e-16 91.3 68 64.7
C09p52400 Brassica napus HOM05D000073 ORTHO05D017582 3.2e-14 84.7 50 84.0
BolC1t04175H Brassica oleracea HOM05D000073 ORTHO05D017582 3.2e-14 84.7 50 84.0
BolC9t58109H Brassica oleracea HOM05D000073 ORTHO05D017582 3.2e-14 84.7 50 84.0
C09p10850 Brassica napus HOM05D000073 ORTHO05D017582 9.3e-14 83.2 50 82.0
TPR.G19723 Trifolium pratense HOM05D002391 ORTHO05D004870 2.7e-13 81.6 59 69.5
TPR.G9012 Trifolium pratense HOM05D002391 ORTHO05D004870 2.3e-12 78.6 57 68.4
FAN19G0487 Fragaria x ananassa HOM05D002391 ORTHO05D017667 1.9e-11 75.5 52 67.3
BcaC09g49148 Brassica carinata HOM05D000073 ORTHO05D017582 4.5e-08 64.3 36 86.1
BraA10t42303Z Brassica rapa HOM05D002391 ORTHO05D017582 1.4e-06 59.3 35 80.0
MCO01G605 Micromonas commoda HOM05D002391 ORTHO05D004870 9.3e-06 56.6 699 18.3


User provided reference genes

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