Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 5.7e-242 840.5 425 100.0
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 5.3e-240 833.9 425 99.1
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 2.5e-237 825.1 425 98.4
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 3.4e-234 814.7 413 99.5
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 3.7e-233 811.2 425 96.0
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 3.7e-233 811.2 425 96.0
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 3.7e-233 811.2 425 96.5
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 5.4e-232 807.4 425 96.0
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 7.0e-232 807.0 425 95.5
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 2.9e-230 801.6 420 96.0
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 6.5e-230 800.4 425 94.4
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 1.5e-229 799.3 420 95.7
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 1.5e-229 799.3 425 94.4
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 1.9e-229 798.9 425 94.1
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 2.1e-228 795.4 425 94.1
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 1.8e-227 792.3 425 93.6
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 1.8e-227 792.3 425 93.6
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 1.5e-226 789.3 415 95.4
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 6.6e-222 773.9 423 91.3
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 1.0e-219 766.5 425 90.1
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 2.3e-214 748.8 425 88.0
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 1.9e-213 745.7 425 87.8
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 4.3e-213 744.6 425 87.5
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 2.1e-212 742.3 425 87.5
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 1.1e-211 740.0 425 87.3
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 1.4e-211 739.6 425 86.8
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 3.1e-211 738.4 425 87.3
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 5.2e-211 737.6 422 87.2
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 1.2e-210 736.5 425 86.8
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 2.0e-210 735.7 425 86.8
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 2.0e-210 735.7 425 85.4
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 2.0e-210 735.7 425 86.6
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 2.6e-210 735.3 425 85.9
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 2.6e-210 735.3 425 86.1
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 3.4e-210 734.9 425 86.1
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 7.5e-210 733.8 425 85.9
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 9.8e-210 733.4 425 85.4
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 3.7e-209 731.5 425 85.9
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 3.7e-209 731.5 424 85.4
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 3.7e-209 731.5 425 86.1
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 4.9e-209 731.1 425 85.4
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 6.4e-209 730.7 425 85.9
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 1.1e-208 729.9 425 85.4
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 1.1e-208 729.9 425 85.6
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 3.2e-208 728.4 425 85.9
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 1.2e-207 726.5 425 84.2
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 1.6e-207 726.1 425 85.6
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 2.7e-207 725.3 422 84.8
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 4.6e-207 724.5 425 84.7
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 6.0e-207 724.2 425 84.9
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 1.3e-206 723.0 425 84.9
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 1.7e-206 722.6 425 83.5
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 5.0e-206 721.1 422 84.4
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 5.0e-206 721.1 417 86.3
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 5.0e-206 721.1 425 84.7
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 6.6e-206 720.7 425 85.4
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 6.6e-206 720.7 424 84.0
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 8.6e-206 720.3 424 84.4
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 8.6e-206 720.3 425 83.8
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 1.9e-205 719.2 425 85.2
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 2.5e-205 718.8 425 84.2
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 5.6e-205 717.6 425 84.0
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.6e-205 717.6 424 84.2
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 5.6e-205 717.6 425 84.2
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 5.6e-205 717.6 425 84.5
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 7.3e-205 717.2 425 83.8
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 7.3e-205 717.2 425 83.8
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.1e-204 715.7 424 84.2
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 2.1e-204 715.7 425 83.8
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 2.8e-204 715.3 425 83.3
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 3.6e-204 714.9 426 83.3
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 4.7e-204 714.5 449 81.5
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 6.2e-204 714.1 415 85.8
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 2.3e-203 712.2 421 84.1
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 2.0e-202 709.1 425 85.2
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 2.6e-202 708.8 421 83.6
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 1.7e-201 706.1 422 81.8
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 3.7e-201 704.9 425 81.9
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 8.3e-201 703.7 438 81.3
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.1e-200 703.4 414 85.0
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 4.1e-200 701.4 471 77.7
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 7.1e-200 700.7 424 81.1
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 9.2e-200 700.3 425 80.5
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 2.1e-199 699.1 421 82.7
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 3.0e-198 695.3 424 80.9
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 6.6e-198 694.1 425 82.6
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 1.9e-197 692.6 425 80.7
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 2.5e-197 692.2 438 79.5
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 2.5e-197 692.2 426 80.5
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 1.2e-196 689.9 426 80.5
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.1e-192 674.1 425 78.1
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 2.7e-191 672.2 422 78.7
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 6.0e-191 671.0 425 78.1
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 7.8e-191 670.6 420 78.8
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 1.0e-190 670.2 422 78.4
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 1.7e-190 669.5 425 78.4
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 5.2e-187 657.9 425 79.3
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 1.2e-186 656.8 422 76.3
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 5.8e-186 654.4 425 78.4
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 1.9e-184 649.4 422 75.6
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.9e-184 649.4 419 77.1
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 3.2e-184 648.7 425 78.6
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 5.4e-184 647.9 422 75.1
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 7.8e-183 644.0 425 77.4
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 1.0e-182 643.7 422 74.2
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 3.9e-182 641.7 425 76.7
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 1.9e-181 639.4 425 77.2
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 3.3e-181 638.6 413 78.9
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 2.1e-180 636.0 422 73.5
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 3.6e-180 635.2 416 76.9
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 8.1e-180 634.0 433 76.2
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 4.5e-178 628.2 422 76.1
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 5.8e-178 627.9 424 76.9
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 1.3e-177 626.7 611 57.8
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 6.4e-177 624.4 442 73.8
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.2e-175 620.2 475 70.7
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 7.9e-175 617.5 417 75.8
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 1.1e-173 613.6 422 73.5
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 7.4e-173 610.9 364 83.0
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.8e-172 609.0 412 74.5
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.7e-172 608.6 406 75.1
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 6.2e-172 607.8 425 70.6
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 5.3e-171 604.7 401 77.3
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.2e-169 599.4 412 73.3
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 2.7e-167 592.4 410 72.4
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.7e-167 592.4 353 81.6
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 3.5e-167 592.0 410 72.9
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 2.5e-165 585.9 430 70.0
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 9.6e-165 583.9 357 81.8
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 6.2e-164 581.3 344 83.1
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.3e-163 578.2 409 72.6
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 9.0e-163 577.4 340 84.7
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 2.6e-162 575.9 339 84.1
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 5.8e-162 574.7 303 95.0
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 5.7e-157 558.1 420 64.8
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 7.4e-157 557.8 434 67.3
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.7e-157 557.4 403 70.0
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 2.2e-156 556.2 415 71.6
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 1.4e-152 543.5 314 86.3
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.0e-150 537.3 399 69.7
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.9e-136 490.0 413 64.4
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 3.2e-136 489.2 418 59.3
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 2.3e-134 483.0 281 83.6
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.2e-129 466.5 286 78.3
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 2.6e-125 453.0 442 55.7
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 7.7e-122 441.4 435 54.0
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 6.3e-116 421.8 432 51.6
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 1.0e-113 414.5 237 87.3
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 1.6e-106 390.6 255 75.3
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 5.6e-104 382.1 436 47.9
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 4.3e-88 329.3 465 43.2
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 2.9e-84 316.6 199 80.4
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 2.1e-82 310.5 171 88.9
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 1.7e-81 307.4 412 42.5
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.8e-70 270.8 239 59.8
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 1.1e-67 261.5 157 79.6
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 7.8e-66 255.4 168 75.6
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 9.0e-62 241.9 166 72.3
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 5.4e-59 232.6 158 74.7
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 1.1e-54 218.4 255 52.2
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 3.1e-54 216.9 161 68.3
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 7.2e-35 152.5 96 77.1
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 1.1e-32 145.2 86 80.2
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 5.3e-30 136.3 86 79.1
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 3.4e-29 133.7 126 59.5
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 9.4e-27 125.6 233 36.1
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 4.1e-22 110.2 72 76.4
Psat5g164800 Pisum sativum HOM05D003847 ORTHO05D004976 1.0e-20 105.5 129 48.1
Medtr4g065940 Medicago truncatula HOM05D003847 ORTHO05D004976 2.1e-18 97.8 95 57.9
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 6.1e-18 96.3 55 78.2
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 1.0e-17 95.5 162 39.5
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 1.1e-16 92.0 58 77.6
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 3.1e-14 84.0 55 65.5
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 7.7e-13 79.3 230 28.7
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 1.0e-12 79.0 48 83.3
BcaC03g16052 Brassica carinata HOM05D003847 ORTHO05D004976 2.7e-10 70.9 38 92.1
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 8.0e-10 69.3 113 38.1
vmacro05291 Vaccinium macrocarpon HOM05D003847 ORTHO05D026554 1.4e-09 68.6 47 74.5
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 2.3e-09 67.8 70 50.0
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 3.4e-08 63.9 32 84.4
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 5.7e-08 63.2 38 71.1
Lsat_1_v5_gn_8_143621 Lactuca sativa HOM05D003847 ORTHO05D028506 5.7e-08 63.2 44 65.9
CAN.G1511.3 Capsicum annuum HOM05D002403 ORTHO05D002724 1.4e-06 58.5 30 83.3


User provided reference genes

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