Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 1.6e-141 506.1 263 100.0
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 2.8e-138 495.4 261 97.7
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 2.4e-137 492.3 261 97.7
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 3.8e-135 485.0 262 95.8
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 7.4e-131 470.7 262 92.7
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 4.8e-130 468.0 265 91.7
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 2.9e-127 458.8 261 91.6
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 2.9e-127 458.8 261 91.6
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 6.4e-127 457.6 261 91.6
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 1.9e-126 456.1 261 90.8
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 5.5e-126 454.5 261 90.4
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 1.6e-125 453.0 261 90.0
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 2.9e-119 432.2 250 90.4
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 6.5e-119 431.0 250 90.0
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 3.5e-117 425.2 245 89.4
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.5e-115 419.9 249 88.4
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.5e-115 419.9 249 88.4
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 4.1e-113 411.8 271 79.0
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 2.4e-105 386.0 266 74.4
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 2.2e-103 379.4 265 73.6
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.1e-102 377.1 268 75.7
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 4.6e-101 371.7 265 72.8
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 1.4e-100 370.2 269 73.2
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 2.3e-100 369.4 267 72.3
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 5.1e-100 368.2 263 70.7
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.1e-99 367.1 263 70.0
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 1.1e-99 367.1 264 70.8
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 1.5e-99 366.7 266 68.0
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 7.4e-99 364.4 266 71.4
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.3e-98 363.6 267 71.2
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 1.7e-98 363.2 264 73.1
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 2.8e-98 362.5 268 72.0
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 3.7e-98 362.1 266 72.2
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 8.2e-98 360.9 197 94.9
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 8.2e-98 360.9 197 94.9
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 8.2e-98 360.9 265 71.3
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 6.9e-97 357.8 264 70.5
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 6.9e-97 357.8 266 70.7
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 9.1e-97 357.5 264 72.0
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 9.1e-97 357.5 264 72.0
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 9.1e-97 357.5 264 72.0
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 9.1e-97 357.5 266 71.1
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 9.1e-97 357.5 265 71.7
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 2.0e-96 356.3 260 71.5
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.0e-96 356.3 263 71.1
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.0e-96 356.3 263 71.1
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.0e-96 356.3 263 71.1
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 2.0e-96 356.3 263 70.0
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 5.9e-96 354.8 261 69.7
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 5.9e-96 354.8 271 67.5
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 5.9e-96 354.8 263 70.7
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.9e-96 354.8 263 70.7
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.9e-96 354.8 263 70.7
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 7.7e-96 354.4 268 70.1
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 1.0e-95 354.0 265 71.3
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 1.0e-95 354.0 263 70.3
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 1.7e-95 353.2 265 68.3
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.2e-95 352.8 263 68.8
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 3.8e-95 352.1 268 69.0
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 5.0e-95 351.7 263 70.0
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 6.5e-95 351.3 261 69.0
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 8.5e-95 350.9 261 69.3
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 1.1e-94 350.5 260 70.0
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 1.4e-94 350.1 267 68.9
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 1.9e-94 349.7 262 68.3
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 2.5e-94 349.4 263 70.0
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 9.4e-94 347.4 260 68.5
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 6.1e-93 344.7 261 68.2
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 1.0e-92 344.0 257 70.0
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 1.4e-92 343.6 260 69.2
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 2.3e-92 342.8 268 67.2
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 3.0e-92 342.4 270 67.0
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 3.9e-92 342.0 270 66.3
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 5.2e-92 341.7 263 68.4
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 5.2e-92 341.7 260 68.5
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 6.7e-92 341.3 262 70.2
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 8.8e-92 340.9 260 67.3
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 1.1e-91 340.5 270 65.9
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 1.1e-91 340.5 263 66.5
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 1.3e-90 337.0 263 66.5
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 1.3e-90 337.0 273 64.1
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 2.2e-90 336.3 270 65.9
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 2.2e-90 336.3 264 67.0
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 3.7e-90 335.5 260 66.2
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 4.8e-90 335.1 261 66.7
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 4.8e-90 335.1 266 67.7
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 6.3e-90 334.7 266 68.4
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.1e-89 334.0 263 66.2
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 1.1e-89 334.0 273 65.6
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.4e-89 333.6 261 65.5
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 3.1e-89 332.4 263 65.8
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 3.1e-89 332.4 262 67.6
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 1.0e-87 327.4 274 63.1
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 5.0e-87 325.1 268 63.4
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 9.4e-86 320.9 220 71.4
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 3.0e-84 315.8 233 66.5
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 7.5e-83 311.2 308 56.2
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 1.7e-82 310.1 247 63.6
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 3.1e-81 305.8 260 61.9
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 1.2e-80 303.9 191 77.0
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 3.5e-80 302.4 234 65.8
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 4.0e-76 288.9 263 60.1
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 1.5e-75 287.0 241 59.3
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 9.8e-75 284.3 223 61.9
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 4.1e-73 278.9 262 58.4
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 3.5e-72 275.8 178 74.2
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.5e-70 269.6 192 72.4
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 2.8e-69 266.2 247 55.1
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 3.6e-69 265.8 213 58.2
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 1.4e-68 263.8 208 60.1
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 8.3e-66 254.6 196 62.2
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.1e-65 254.2 180 65.0
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 7.0e-65 251.5 244 56.6
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 1.6e-64 250.4 221 59.3
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 7.5e-59 231.5 262 56.1
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 7.5e-59 231.5 262 56.1
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 2.2e-58 229.9 262 55.7
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 2.7e-56 223.0 174 69.5
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 1.2e-51 207.6 144 67.4
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 4.6e-48 195.7 132 75.0
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 5.8e-43 178.7 153 52.3
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 2.5e-38 163.3 154 47.4
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 3.3e-38 162.9 115 72.2
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 4.7e-37 159.1 112 69.6
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.4e-36 157.5 157 55.4
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 2.0e-27 127.1 98 68.4
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.7e-26 124.0 173 37.6
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.0e-23 114.8 76 73.7
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 2.2e-18 97.1 70 65.7
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 4.9e-18 95.9 90 53.3
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 6.7e-15 85.5 66 63.6
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 4.3e-14 82.8 163 27.0
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 1.2e-11 74.7 60 61.7
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.9e-10 70.1 85 50.6
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 4.2e-09 66.2 39 76.9
Cfa027004 Carpinus fangiana HOM05D001556 ORTHO05D001505 3.3e-06 56.6 139 23.7
CDE10G0560 Ceratophyllum demersum HOM05D000487 ORTHO05D001505 5.6e-06 55.8 181 24.3
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 5.6e-06 55.8 113 33.6
MD17G1264500 Malus domestica HOM05D001556 ORTHO05D001505 9.6e-06 55.1 141 26.2


User provided reference genes

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