Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.2e-283 979.2 507 100.0
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 1.7e-248 862.4 508 89.8
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 8.3e-232 807.0 508 83.9
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 3.1e-226 788.5 517 81.2
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 1.9e-220 769.2 508 80.1
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 1.4e-215 753.1 518 78.2
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 2.2e-208 729.2 517 74.9
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 3.8e-208 728.4 517 75.0
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 8.4e-208 727.2 517 74.9
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 7.1e-207 724.2 514 75.1
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 6.0e-206 721.1 514 75.3
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 1.9e-204 716.1 516 75.0
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 1.9e-199 699.5 518 73.2
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 3.9e-197 691.8 518 73.7
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 3.9e-197 691.8 518 73.7
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 3.9e-197 691.8 518 73.7
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 2.1e-195 686.0 517 72.5
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 4.8e-195 684.9 517 72.0
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 7.9e-182 641.0 509 69.5
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 1.2e-153 547.4 515 60.6
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 1.7e-107 394.0 572 44.1
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 1.2e-100 371.3 571 44.3
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.1e-97 360.5 593 43.2
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 2.7e-97 360.1 571 42.6
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 2.7e-97 360.1 569 42.2
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 4.6e-97 359.4 569 43.1
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 1.0e-96 358.2 582 40.7
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 3.9e-96 356.3 553 42.3
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 6.6e-96 355.5 573 42.4
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 4.3e-95 352.8 586 42.7
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 2.1e-94 350.5 513 41.7
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 4.8e-94 349.4 544 44.1
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 1.4e-93 347.8 579 41.3
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 1.8e-93 347.4 593 42.0
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 1.8e-93 347.4 564 41.0
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 4.0e-93 346.3 583 42.4
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 5.3e-93 345.9 592 40.5
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 5.3e-93 345.9 556 42.3
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 1.5e-92 344.4 585 42.1
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 2.0e-92 344.0 593 41.8
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 2.0e-92 344.0 586 41.3
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 2.6e-92 343.6 560 41.4
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 3.4e-92 343.2 553 41.6
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 3.4e-92 343.2 604 39.6
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 9.9e-92 341.7 589 41.6
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.3e-91 341.3 552 40.8
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 1.1e-90 338.2 615 39.0
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.1e-90 338.2 636 39.0
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 1.4e-90 337.8 527 40.8
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.9e-90 337.4 564 40.4
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 2.4e-90 337.0 593 39.8
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 1.2e-89 334.7 579 39.9
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 1.6e-89 334.3 604 38.9
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.0e-88 331.6 558 39.8
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 1.3e-88 331.3 603 39.1
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 3.3e-87 326.6 572 40.4
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.3e-87 326.6 585 40.2
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 9.6e-87 325.1 563 39.4
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 9.6e-87 325.1 577 40.2
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 6.2e-86 322.4 591 41.1
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 8.1e-86 322.0 577 39.7
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 1.2e-84 318.2 570 40.7
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 1.3e-83 314.7 579 38.9
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 2.2e-83 313.9 590 38.8
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 2.2e-83 313.9 563 41.0
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 2.9e-83 313.5 589 39.0
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 8.4e-83 312.0 544 39.0
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 7.1e-82 308.9 696 35.8
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 4.6e-81 306.2 570 40.0
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 4.6e-81 306.2 574 38.9
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 6.0e-81 305.8 575 39.3
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 3.3e-79 300.1 523 38.8
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 9.6e-79 298.5 513 39.6
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 1.6e-78 297.7 596 37.1
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 4.1e-77 293.1 620 36.6
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 2.9e-75 287.0 558 38.4
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 2.7e-73 280.4 610 35.9
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 2.7e-73 280.4 505 38.0
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 3.5e-73 280.0 289 53.6
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 4.6e-73 279.6 559 36.5
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 1.3e-72 278.1 533 40.2
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 1.9e-71 274.2 378 43.7
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.6e-70 271.2 305 50.2
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 1.6e-70 271.2 305 50.2
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 3.7e-70 270.0 305 49.2
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 4.1e-69 266.5 608 35.2
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 2.0e-68 264.2 531 37.1
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 4.5e-68 263.1 549 35.2
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 1.3e-67 261.5 573 36.5
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.4e-66 258.1 358 45.0
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.2e-66 256.9 478 38.5
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 3.2e-66 256.9 580 33.4
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 1.6e-65 254.6 606 35.5
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.6e-65 254.6 606 35.5
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.6e-65 253.4 606 35.1
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.1e-65 252.7 606 35.0
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 1.0e-64 251.9 506 37.0
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 9.7e-63 245.4 642 32.7
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 9.7e-63 245.4 579 35.6
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 6.3e-62 242.7 295 47.1
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 1.7e-59 234.6 521 34.4
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 3.8e-59 233.4 431 39.4
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.7e-57 227.3 478 36.2
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 4.7e-57 226.5 594 31.0
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 6.1e-57 226.1 220 55.5
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 6.7e-56 222.6 590 32.4
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 6.7e-56 222.6 418 37.3
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 1.1e-55 221.9 592 31.1
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 2.0e-55 221.1 486 36.0
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 3.3e-55 220.3 475 37.3
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 9.7e-55 218.8 291 45.7
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.5e-52 209.9 606 32.3
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 5.9e-52 209.5 371 41.2
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 4.2e-50 203.4 584 33.2
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 3.0e-48 197.2 369 37.4
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 2.6e-47 194.1 307 41.4
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 7.0e-45 186.0 282 41.8
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 1.6e-44 184.9 265 42.6
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.5e-44 183.3 265 42.3
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.0e-43 182.2 265 42.3
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.3e-43 181.8 445 33.5
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 2.9e-43 180.6 148 69.6
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 5.0e-43 179.9 268 41.4
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.6e-41 173.7 265 41.5
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 2.2e-35 154.5 427 31.4
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.0e-32 145.6 294 36.4
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 8.8e-32 142.5 116 59.5
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.5e-31 141.7 497 29.8
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.6e-31 141.0 412 31.1
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 1.7e-27 128.3 102 60.8
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 3.8e-27 127.1 285 28.1
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 1.6e-25 121.7 161 43.5
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 8.0e-25 119.4 130 46.2
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 3.0e-24 117.5 334 33.5
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.2e-24 116.7 270 35.2
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.4e-23 113.6 423 30.7
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 2.7e-20 104.4 100 52.0
AT4G01245 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 2.3e-19 101.3 67 86.6
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 3.3e-18 97.4 161 36.0
BraA03t10099Z Brassica rapa HOM05D004687 ORTHO05D016135 4.3e-18 97.1 73 71.2
A03p47890 Brassica napus HOM05D004687 ORTHO05D016135 1.6e-17 95.1 73 69.9
BraA03t13898Z Brassica rapa HOM05D004687 ORTHO05D016135 2.8e-17 94.4 73 69.9
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 3.1e-16 90.9 285 26.3
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 2.6e-15 87.8 350 29.7
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 2.2e-14 84.7 325 30.8
A03p07720 Brassica napus HOM05D004224 ORTHO05D016135 8.3e-14 82.8 62 69.4
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.9e-13 81.6 130 39.2
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 2.4e-13 81.3 100 47.0
C02p16100 Brassica napus HOM05D004224 ORTHO05D016135 1.7e-11 75.1 53 77.4
Aa31sc194G50 Aethionema arabicum HOM05D004687 ORTHO05D006002 3.0e-11 74.3 111 44.1
BolC7t44656H Brassica oleracea HOM05D004687 ORTHO05D016135 6.6e-11 73.2 52 76.9
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 7.3e-10 69.7 185 32.4
C04p38640 Brassica napus HOM05D001371 ORTHO05D014523 4.0e-08 63.9 52 65.4
C03p85080 Brassica napus HOM05D004224 ORTHO05D016135 6.8e-08 63.2 50 68.0
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.5e-07 62.0 101 39.6
C06p44760 Brassica napus HOM05D004224 ORTHO05D016135 3.7e-06 57.4 50 68.0
BolC4t25441H Brassica oleracea HOM05D001371 ORTHO05D001319 8.3e-06 56.2 76 52.6


User provided reference genes

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