Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G01245 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.6e-56 222.6 119 100.0
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 2.2e-21 105.9 67 86.6
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 2.6e-19 99.0 67 80.6
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 1.6e-16 89.7 67 73.1
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 2.7e-16 89.0 68 73.5
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 4.6e-16 88.2 67 71.6
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 4.6e-16 88.2 67 71.6
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 4.6e-16 88.2 67 71.6
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 4.6e-16 88.2 67 71.6
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 4.6e-16 88.2 67 71.6
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 6.1e-16 87.8 67 71.6
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 2.3e-15 85.9 67 70.1
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 2.3e-15 85.9 76 63.2
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 7.4e-14 80.9 68 69.1
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 1.3e-13 80.1 66 77.3
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 2.2e-13 79.3 60 75.0
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 2.8e-13 79.0 68 72.1
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 2.8e-13 79.0 68 72.1
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 2.8e-13 79.0 68 72.1
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 3.7e-13 78.6 67 64.2
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 7.7e-11 70.9 66 65.2
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 1.9e-09 66.2 68 52.9
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 3.2e-09 65.5 68 55.9
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 9.4e-09 63.9 59 71.2
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.6e-08 63.2 62 51.6
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.1e-08 62.8 60 58.3
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 3.6e-08 62.0 60 56.7
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 4.7e-08 61.6 62 51.6
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 6.1e-08 61.2 66 48.5
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 6.1e-08 61.2 59 57.6
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 7.9e-08 60.8 60 58.3
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.0e-07 60.5 60 56.7
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 1.4e-07 60.1 62 54.8
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 1.8e-07 59.7 74 50.0
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 1.8e-07 59.7 68 50.0
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 2.3e-07 59.3 66 53.0
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 2.3e-07 59.3 60 55.0
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 3.0e-07 58.9 62 54.8
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 3.0e-07 58.9 67 52.2
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 3.9e-07 58.5 60 56.7
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 3.9e-07 58.5 74 50.0
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 3.9e-07 58.5 59 54.2
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 6.7e-07 57.8 60 53.3
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 6.7e-07 57.8 60 61.7
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 1.1e-06 57.0 60 53.3
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 1.1e-06 57.0 60 56.7
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.5e-06 56.6 60 51.7
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 1.5e-06 56.6 68 48.5
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.5e-06 56.6 59 52.5
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 1.5e-06 56.6 59 55.9
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 2.0e-06 56.2 59 52.5
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 2.0e-06 56.2 59 54.2
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 2.0e-06 56.2 59 54.2
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 2.0e-06 56.2 58 53.4
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 2.0e-06 56.2 60 53.3
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 2.6e-06 55.8 60 51.7
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 3.3e-06 55.5 91 39.6
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 3.3e-06 55.5 59 54.2
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 3.3e-06 55.5 60 51.7
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 3.3e-06 55.5 68 44.1
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 4.4e-06 55.1 59 52.5
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 5.7e-06 54.7 60 53.3
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 7.4e-06 54.3 60 50.0
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 7.4e-06 54.3 60 50.0
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 7.4e-06 54.3 53 54.7
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 9.7e-06 53.9 55 54.5


User provided reference genes

Program Settings