Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.4e-251 871.7 445 100.0
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.9e-195 686.0 477 79.2
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 7.9e-186 654.1 523 71.3
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 5.0e-140 501.9 471 63.7
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 2.2e-103 380.2 474 55.3
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 2.3e-84 317.0 480 46.2
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 3.3e-75 286.6 505 42.8
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 3.5e-64 250.0 428 41.8
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 3.9e-60 236.5 510 38.4
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 3.5e-56 223.4 292 50.3
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 3.8e-55 219.9 513 36.5
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 2.9e-47 193.7 241 53.1
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 1.1e-46 191.8 492 36.0
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 4.2e-46 189.9 458 36.7
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 8.0e-45 185.7 443 36.8
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 1.8e-44 184.5 443 36.6
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 1.4e-36 158.3 264 40.5
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 4.4e-35 153.3 221 44.3
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 9.2e-33 145.6 299 37.1
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 1.6e-32 144.8 212 41.0
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 4.6e-32 143.3 217 40.6
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 1.3e-31 141.7 217 40.1
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 2.4e-25 120.9 294 31.3
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 4.1e-25 120.2 376 30.6
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 2.7e-24 117.5 188 44.1
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 3.5e-24 117.1 213 35.7
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 4.6e-24 116.7 214 36.0
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 6.0e-24 116.3 244 35.2
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.0e-23 115.5 281 33.5
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 5.0e-23 113.2 272 30.9
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 6.6e-23 112.8 272 30.9
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 6.6e-23 112.8 272 30.9
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 1.6e-21 108.2 145 42.1
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.8e-21 107.5 466 27.5
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 2.8e-21 107.5 277 31.4
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 1.1e-20 105.5 254 31.1
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 1.1e-20 105.5 217 33.2
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 1.1e-20 105.5 254 31.1
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 4.0e-20 103.6 411 26.5
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 1.2e-19 102.1 118 43.2
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 5.8e-19 99.8 335 26.0
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 9.8e-19 99.0 391 25.1
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 9.8e-19 99.0 396 28.0
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 1.7e-18 98.2 335 26.0
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 1.4e-17 95.1 145 36.6
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.2e-16 92.0 165 38.2
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.6e-16 91.7 131 41.2
Sp7g09570 Schrenkiella parvula HOM05D009282 ORTHO05D003486 7.8e-16 89.4 123 49.6
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.3e-15 88.6 156 36.5
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 1.3e-15 88.6 114 43.9
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 2.3e-15 87.8 104 39.4
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 3.0e-15 87.4 136 41.9
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 3.9e-15 87.0 133 39.8
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 5.1e-15 86.7 104 43.3
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 6.6e-15 86.3 125 39.2
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 6.6e-15 86.3 202 34.2
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 8.6e-15 85.9 131 39.7
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 8.6e-15 85.9 104 43.3
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 1.9e-14 84.7 241 27.4
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 4.3e-14 83.6 112 38.4
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 4.3e-14 83.6 100 43.0
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 4.3e-14 83.6 162 34.0
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 5.6e-14 83.2 158 36.1
SpUn0565_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 5.6e-14 83.2 132 45.5
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 7.3e-14 82.8 145 34.5
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 7.3e-14 82.8 150 39.3
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 7.3e-14 82.8 108 43.5
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 9.5e-14 82.4 102 43.1
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.2e-13 82.0 115 39.1
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 1.2e-13 82.0 210 30.5
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 1.6e-13 81.6 135 39.3
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.6e-13 81.6 124 38.7
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 2.1e-13 81.3 131 37.4
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 2.1e-13 81.3 163 33.1
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.8e-13 80.9 104 37.5
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 2.8e-13 80.9 142 37.3
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 2.8e-13 80.9 186 33.9
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 3.6e-13 80.5 437 25.4
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 4.7e-13 80.1 102 41.2
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.2e-13 79.7 126 38.1
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 6.2e-13 79.7 118 36.4
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 1.1e-12 79.0 149 31.5
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 1.4e-12 78.6 136 39.0
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 1.4e-12 78.6 158 36.7
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 1.4e-12 78.6 100 40.0
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 2.3e-12 77.8 226 29.2
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 3.1e-12 77.4 162 29.0
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 6.8e-12 76.3 112 37.5
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 1.2e-11 75.5 151 31.8
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 1.5e-11 75.1 131 38.2
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.5e-11 75.1 147 34.7
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 1.5e-11 75.1 109 34.9
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 2.0e-11 74.7 113 31.9
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 2.6e-11 74.3 115 39.1
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 2.6e-11 74.3 118 37.3
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 3.4e-11 73.9 139 36.0
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 3.4e-11 73.9 131 32.1
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 3.4e-11 73.9 116 37.9
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 4.4e-11 73.6 120 40.0
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 5.8e-11 73.2 178 32.6
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 7.6e-11 72.8 100 39.0
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 7.6e-11 72.8 123 35.0
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 7.6e-11 72.8 118 38.1
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 7.6e-11 72.8 132 37.1
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 7.6e-11 72.8 214 30.4
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 9.9e-11 72.4 118 38.1
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 1.7e-10 71.6 134 34.3
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 2.2e-10 71.2 224 28.1
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 2.2e-10 71.2 145 31.7
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 2.2e-10 71.2 298 27.2
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 3.7e-10 70.5 429 23.5
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 3.7e-10 70.5 121 33.9
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 3.7e-10 70.5 120 35.8
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 4.9e-10 70.1 115 33.0
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 6.4e-10 69.7 118 39.0
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 6.4e-10 69.7 134 35.1
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 1.1e-09 68.9 153 34.0
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 2.4e-09 67.8 113 33.6
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 3.2e-09 67.4 113 37.2
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 3.2e-09 67.4 113 37.2
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 7.1e-09 66.2 100 37.0
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 7.1e-09 66.2 284 25.4
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 9.2e-09 65.9 115 37.4
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 9.2e-09 65.9 159 30.8
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 9.2e-09 65.9 100 37.0
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 9.2e-09 65.9 113 33.6
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 9.2e-09 65.9 113 32.7
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.2e-08 65.5 151 34.4
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.2e-08 65.5 151 34.4
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 1.2e-08 65.5 167 29.9
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.6e-08 65.1 107 38.3
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 1.6e-08 65.1 107 34.6
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.6e-08 65.1 112 34.8
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.6e-08 65.1 187 28.9
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 1.6e-08 65.1 113 32.7
Aqoxy6G00303 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 2.7e-08 64.3 126 34.9
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 3.5e-08 63.9 100 35.0
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 4.6e-08 63.5 105 38.1
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 4.6e-08 63.5 100 40.0
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 6.0e-08 63.2 96 38.5
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 7.8e-08 62.8 131 33.6
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.0e-07 62.4 115 31.3
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 1.7e-07 61.6 179 33.5
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 2.3e-07 61.2 119 32.8
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 3.0e-07 60.8 140 30.7
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 3.0e-07 60.8 479 24.6
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 3.9e-07 60.5 120 31.7
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.1e-07 60.1 111 34.2
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 5.1e-07 60.1 120 35.8
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 5.1e-07 60.1 120 35.8
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 5.1e-07 60.1 113 31.0
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 5.1e-07 60.1 100 36.0
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 5.1e-07 60.1 173 28.9
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 5.1e-07 60.1 173 28.9
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 8.6e-07 59.3 107 31.8
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.1e-06 58.9 100 32.0
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 1.1e-06 58.9 106 32.1
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 1.1e-06 58.9 100 31.0
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 1.5e-06 58.5 103 37.9
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 1.5e-06 58.5 104 32.7
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.9e-06 58.2 102 36.3
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 2.5e-06 57.8 102 30.4
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 4.3e-06 57.0 222 24.8
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 5.6e-06 56.6 222 24.8
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 5.6e-06 56.6 102 33.3
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 9.6e-06 55.8 94 34.0
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 9.6e-06 55.8 430 24.2


User provided reference genes

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