Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G00950 Arabidopsis thaliana HOM05D002242 ORTHO05D002275 1.5e-156 556.2 292 100.0
AL6G52440 Arabidopsis lyrata HOM05D002242 ORTHO05D002275 4.5e-137 491.5 291 90.7
Carub.0006s3599 Capsella rubella HOM05D002242 ORTHO05D002275 4.3e-124 448.4 299 81.6
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 7.9e-118 427.6 290 80.3
Sp6g01185 Schrenkiella parvula HOM05D002242 ORTHO05D002275 7.9e-118 427.6 293 80.5
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 3.9e-117 425.2 290 80.3
BcaC04g24107 Brassica carinata HOM05D002242 ORTHO05D002275 1.1e-116 423.7 290 80.0
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 1.1e-116 423.7 290 80.0
BcaB01g02293 Brassica carinata HOM05D002242 ORTHO05D002275 1.2e-110 403.7 290 76.6
Thhalv10028866m.g Eutrema salsugineum HOM05D002242 ORTHO05D002275 2.6e-108 396.0 292 77.1
CARHR249390 Cardamine hirsuta HOM05D002242 ORTHO05D002275 6.3e-107 391.3 292 76.4
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 1.6e-102 376.7 290 74.5
Aa31LG5G990 Aethionema arabicum HOM05D002242 ORTHO05D002275 1.0e-77 294.3 295 61.7
THA.LOC104825883 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 6.2e-70 268.5 290 54.5
THA.LOC104817057 Tarenaya hassleriana HOM05D002242 ORTHO05D002275 2.7e-57 226.5 296 50.7
Atru.chr5.685 Acer truncatum HOM05D002242 ORTHO05D002275 6.9e-37 158.7 297 42.4
Duzib138G1576 Durio zibethinus HOM05D002242 ORTHO05D002275 3.5e-33 146.4 288 38.9
Thecc.01G340500 Theobroma cacao HOM05D002242 ORTHO05D002275 1.8e-32 144.1 294 41.2
Cpa.g.sc96.41 Carica papaya HOM05D002242 ORTHO05D002275 6.7e-32 142.1 294 41.8
Ciclev10021650m.g Citrus clementina HOM05D002242 ORTHO05D002275 1.3e-30 137.9 303 38.3
COL.COLO4_06225 Corchorus olitorius HOM05D002242 ORTHO05D002275 1.3e-30 137.9 289 39.1
CiPaw.01G077500 Carya illinoinensis HOM05D002242 ORTHO05D002275 4.0e-29 132.9 291 39.9
Potri.002G172900 Populus trichocarpa HOM05D002242 ORTHO05D002275 6.9e-29 132.1 290 41.0
FAN01G2189 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.7e-27 127.5 293 39.6
Sabra02G0140300 Salix brachista HOM05D002242 ORTHO05D002275 1.7e-27 127.5 278 39.6
Gohir.D11G102500 Gossypium hirsutum HOM05D002242 ORTHO05D002275 3.8e-27 126.3 292 38.7
Haze_15674 Corylus avellana HOM05D002242 ORTHO05D002275 8.4e-27 125.2 284 39.1
FAN03G2616 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.9e-26 124.0 281 39.9
FAN10G2930 Fragaria x ananassa HOM05D002242 ORTHO05D002275 1.9e-26 124.0 281 40.2
Gorai.007G109600 Gossypium raimondii HOM05D002242 ORTHO05D002275 1.9e-26 124.0 261 40.2
FvH4_7g16850 Fragaria vesca HOM05D002242 ORTHO05D002275 2.4e-26 123.6 281 40.2
Gohir.A07G136800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 4.2e-26 122.9 292 36.3
Manes.01G244900 Manihot esculenta HOM05D002242 ORTHO05D002275 4.2e-26 122.9 292 37.3
Prupe.2G190500 Prunus persica HOM05D002242 ORTHO05D002275 4.2e-26 122.9 296 37.8
FAN10G3865 Fragaria x ananassa HOM05D002242 ORTHO05D002275 5.5e-26 122.5 281 39.9
Gohir.A11G097800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.6e-25 120.9 292 38.7
Manes.05G021600 Manihot esculenta HOM05D002242 ORTHO05D002275 1.0e-24 118.2 296 38.5
Sabra14G0073600 Salix brachista HOM05D002242 ORTHO05D002275 1.8e-24 117.5 293 36.2
FAN06G0152 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.3e-24 117.1 287 39.4
FAN06G1161 Fragaria x ananassa HOM05D002242 ORTHO05D002275 3.9e-24 116.3 287 39.4
Gohir.D07G142066 Gossypium hirsutum HOM05D002242 ORTHO05D002275 8.7e-24 115.2 292 35.3
MD01G1083500 Malus domestica HOM05D002242 ORTHO05D002275 1.5e-23 114.4 276 37.7
RcHm_v2.0_Chr1g0360071 Rosa chinensis HOM05D002242 ORTHO05D002275 3.3e-23 113.2 279 38.4
Potri.014G100200 Populus trichocarpa HOM05D002242 ORTHO05D002275 1.6e-22 110.9 307 33.9
CANSAT56G1040 Cannabis sativa HOM05D002242 ORTHO05D002275 2.1e-22 110.5 287 38.0
Glyma.16G023500 Glycine max HOM05D002242 ORTHO05D002275 2.8e-22 110.2 290 35.2
TWI59G0079 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 8.2e-22 108.6 287 34.5
MD07G1152200 Malus domestica HOM05D002242 ORTHO05D002275 1.4e-21 107.8 280 35.7
Glyma.07G054700 Glycine max HOM05D002242 ORTHO05D002275 7.6e-20 102.1 295 34.2
TWI23G0291 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 1.7e-19 100.9 291 33.3
Hma1.2p1_0101F.1_g049310 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 3.8e-19 99.8 297 36.7
Cc02_g39550 Coffea canephora HOM05D002242 ORTHO05D002275 6.5e-19 99.0 266 35.0
QL08p045696 Quercus lobata HOM05D002242 ORTHO05D002275 5.5e-18 95.9 291 34.0
DCAR_025263 Daucus carota HOM05D002242 ORTHO05D002275 9.3e-18 95.1 280 32.5
Nitab4.5_0010712g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 9.3e-18 95.1 289 32.5
Peaxi162Scf00345g00124 Petunia axillaris HOM05D002242 ORTHO05D002275 1.2e-17 94.7 290 32.1
Actinidia20250 Actinidia chinensis HOM05D002242 ORTHO05D002275 1.6e-17 94.4 290 31.4
TWI14G0218 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 1.6e-17 94.4 290 32.4
Gorai.001G153800 Gossypium raimondii HOM05D002242 ORTHO05D002275 4.6e-17 92.8 275 33.8
Gorai.008G126300 Gossypium raimondii HOM05D002242 ORTHO05D002275 7.9e-17 92.0 300 33.7
Gohir.D12G116600 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.3e-16 91.3 300 33.7
Sopen01g039800 Solanum pennellii HOM05D002242 ORTHO05D002275 1.5e-15 87.8 278 32.0
Actinidia07972 Actinidia chinensis HOM05D002242 ORTHO05D002275 1.9e-15 87.4 291 33.0
Peaxi162Scf00087g02228 Petunia axillaris HOM05D002242 ORTHO05D002275 1.9e-15 87.4 278 33.5
arahy.Tifrunner.gnm1.ann1.QL2KDB Arachis hypogaea HOM05D002242 ORTHO05D002275 2.5e-15 87.0 300 33.0
Solyc01g096080.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 2.5e-15 87.0 278 31.7
TAR636G3588 Trochodendron aralioides HOM05D002242 ORTHO05D002275 3.3e-15 86.7 290 31.0
AUR62004507 Chenopodium quinoa HOM05D002242 ORTHO05D002275 9.7e-15 85.1 309 31.4
Hund27189 Selenicereus undatus HOM05D002242 ORTHO05D002275 9.7e-15 85.1 276 31.5
Dinv34219 Davidia involucrata HOM05D002242 ORTHO05D002275 2.1e-14 84.0 297 32.3
Lalb_Chr10g0100621 Lupinus albus HOM05D002242 ORTHO05D002275 1.1e-13 81.6 251 30.3
Gohir.A12G113100 Gossypium hirsutum HOM05D002242 ORTHO05D002275 3.1e-13 80.1 296 33.1
MSTRG.28269 Avicennia marina HOM05D002242 ORTHO05D002275 4.1e-13 79.7 292 30.5
Nitab4.5_0001763g0050 Nicotiana tabacum HOM05D002242 ORTHO05D002275 4.1e-13 79.7 301 30.9
Oeu004983.1 Olea europaea HOM05D002242 ORTHO05D002275 4.1e-13 79.7 296 28.7
CAN.G1415.21 Capsicum annuum HOM05D002242 ORTHO05D002275 5.3e-13 79.3 276 30.1
TAR425G0001 Trochodendron aralioides HOM05D002242 ORTHO05D002275 5.3e-13 79.3 276 31.9
EL10Ac1g00249 Beta vulgaris HOM05D002242 ORTHO05D002275 9.0e-13 78.6 201 38.8
DCAR_005401 Daucus carota HOM05D002242 ORTHO05D002275 1.5e-12 77.8 280 32.5
Hma1.2p1_0390F.1_g142630 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 1.5e-12 77.8 289 32.9
Manes.02G144300 Manihot esculenta HOM05D002242 ORTHO05D002275 1.5e-12 77.8 275 31.3
Oeu043226.1 Olea europaea HOM05D002242 ORTHO05D002275 2.0e-12 77.4 273 30.8
PGSC0003DMG400000119 Solanum tuberosum HOM05D002242 ORTHO05D002275 2.0e-12 77.4 270 30.7
CSS0021112 Camellia sinensis var. sinensis HOM05D002242 ORTHO05D002275 4.5e-12 76.3 291 30.9
Glyma.03G258400 Glycine max HOM05D002242 ORTHO05D002275 4.5e-12 76.3 283 30.0
Lsat_1_v5_gn_4_33660 Lactuca sativa HOM05D002242 ORTHO05D002275 4.5e-12 76.3 281 32.0
Rhsim01G0174300 Rhododendron simsii HOM05D002242 ORTHO05D002275 7.6e-12 75.5 292 33.2
Lj1g0020065 Lotus japonicus HOM05D002242 ORTHO05D002275 1.0e-11 75.1 289 32.2
arahy.Tifrunner.gnm1.ann1.EWV5Y4 Arachis hypogaea HOM05D002242 ORTHO05D002275 1.3e-11 74.7 217 34.6
Nn1g00284 Nelumbo nucifera HOM05D002242 ORTHO05D002275 2.9e-11 73.6 291 29.9
Actinidia28112 Actinidia chinensis HOM05D002242 ORTHO05D002275 3.8e-11 73.2 202 36.6
GSVIVG01027167001 Vitis vinifera HOM05D002242 ORTHO05D002275 5.0e-11 72.8 287 30.3
Ca_09517_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 6.5e-11 72.4 204 33.8
arahy.Tifrunner.gnm1.ann1.P3SJ11 Arachis hypogaea HOM05D002242 ORTHO05D002275 1.9e-10 70.9 217 35.9
SalBow3G1264 Salvia bowleyana HOM05D002242 ORTHO05D002275 1.9e-10 70.9 286 29.7
PGSC0003DMG400007035 Solanum tuberosum HOM05D002242 ORTHO05D002275 1.9e-10 70.9 273 25.3
Lj4g0010373 Lotus japonicus HOM05D002242 ORTHO05D002275 2.5e-10 70.5 285 29.1
MBI06_g38007_MAGBIO Magnolia biondii HOM05D002242 ORTHO05D002275 3.2e-10 70.1 270 27.0
Atru.chr12.2237 Acer truncatum HOM05D002242 ORTHO05D002275 9.3e-10 68.6 269 31.2
arahy.Tifrunner.gnm1.ann1.73LR1S Arachis hypogaea HOM05D002242 ORTHO05D002275 9.3e-10 68.6 300 31.3
Oeu007879.1 Olea europaea HOM05D002242 ORTHO05D002275 2.1e-09 67.4 293 29.4
MSTRG.17354 Avicennia marina HOM05D002242 ORTHO05D002275 4.6e-09 66.2 284 31.7
Dinv32603 Davidia involucrata HOM05D002242 ORTHO05D002275 4.6e-09 66.2 267 32.2
FAN03G3456 Fragaria x ananassa HOM05D002242 ORTHO05D002275 6.1e-09 65.9 290 26.9
Dinv29268 Davidia involucrata HOM05D002242 ORTHO05D002275 1.0e-08 65.1 286 28.0
Migut.N01536 Erythranthe guttata HOM05D002242 ORTHO05D002275 1.0e-08 65.1 165 32.1
Oeu060992.1 Olea europaea HOM05D002242 ORTHO05D002275 1.0e-08 65.1 275 26.9
Solyc05g050550.4 Solanum lycopersicum HOM05D002242 ORTHO05D002275 1.0e-08 65.1 275 25.5
Glyma.06G129800 Glycine max HOM05D002242 ORTHO05D002275 1.8e-08 64.3 281 27.8
Sc01g0002560 Simmondsia chinensis HOM05D002242 ORTHO05D002275 1.8e-08 64.3 277 29.6
Migut.O00897 Erythranthe guttata HOM05D002242 ORTHO05D002275 2.3e-08 63.9 293 28.3
FvH4_7g31360 Fragaria vesca HOM05D002242 ORTHO05D002275 2.3e-08 63.9 290 26.2
FAN06G3788 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.3e-08 63.9 290 26.2
Psat4g214600 Pisum sativum HOM05D002242 ORTHO05D002275 3.9e-08 63.2 116 42.2
PGR142G4389 Punica granatum HOM05D002242 ORTHO05D002275 3.9e-08 63.2 295 28.5
Solyc03g083050.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 3.9e-08 63.2 195 29.2
Sopen03g022850 Solanum pennellii HOM05D002242 ORTHO05D002275 5.1e-08 62.8 194 29.4
FAN01G0248 Fragaria x ananassa HOM05D002242 ORTHO05D002275 6.7e-08 62.4 290 25.5
FAN06G4446 Fragaria x ananassa HOM05D002242 ORTHO05D002275 6.7e-08 62.4 290 25.5
QL09p008666 Quercus lobata HOM05D002242 ORTHO05D002275 6.7e-08 62.4 150 36.7
Rhsim07G0003200 Rhododendron simsii HOM05D002242 ORTHO05D002275 6.7e-08 62.4 128 36.7
Medtr1g007905 Medicago truncatula HOM05D002242 ORTHO05D002275 8.7e-08 62.0 278 25.2
Nitab4.5_0004497g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 8.7e-08 62.0 105 41.0
Psat3g001920 Pisum sativum HOM05D002242 ORTHO05D002275 8.7e-08 62.0 206 31.6
Nitab4.5_0003046g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 1.1e-07 61.6 106 38.7
vmacro13169 Vaccinium macrocarpon HOM05D002242 ORTHO05D002275 1.1e-07 61.6 157 34.4
Lj3g0010764 Lotus japonicus HOM05D002242 ORTHO05D002275 1.5e-07 61.2 106 41.5
MSTRG.8647 Avicennia marina HOM05D002242 ORTHO05D002275 2.5e-07 60.5 167 33.5
Glyma.04G234700 Glycine max HOM05D002242 ORTHO05D002275 2.5e-07 60.5 249 27.7
Medtr8g027435 Medicago truncatula HOM05D002242 ORTHO05D002275 2.5e-07 60.5 113 38.1
Sopen05g028980 Solanum pennellii HOM05D002242 ORTHO05D002275 2.5e-07 60.5 258 26.7
Ah.05g179410 Amaranthus hybridus HOM05D002242 ORTHO05D002275 3.3e-07 60.1 221 30.8
BcaC04g20515 Brassica carinata HOM05D002242 ORTHO05D002275 3.3e-07 60.1 255 28.2
TPR.G20223 Trifolium pratense HOM05D002242 ORTHO05D002275 4.3e-07 59.7 286 30.4
CAN.G481.20 Capsicum annuum HOM05D002242 ORTHO05D002275 7.4e-07 58.9 106 35.8
Prupe.2G309000 Prunus persica HOM05D002242 ORTHO05D002275 9.7e-07 58.5 271 25.8
BraA10t43133Z Brassica rapa HOM05D002242 ORTHO05D002275 1.3e-06 58.2 255 27.8
Cfa016239 Carpinus fangiana HOM05D002242 ORTHO05D002275 1.3e-06 58.2 115 38.3
Eucgr.H01540 Eucalyptus grandis HOM05D002242 ORTHO05D002275 1.3e-06 58.2 287 29.6
Eucgr.H01594 Eucalyptus grandis HOM05D002242 ORTHO05D002275 1.3e-06 58.2 287 29.6
Rhsim03G0209500 Rhododendron simsii HOM05D002242 ORTHO05D002275 1.3e-06 58.2 251 28.7
Aa31LG3G9450 Aethionema arabicum HOM05D002242 ORTHO05D002275 1.6e-06 57.8 141 34.0
Sp6g15180 Schrenkiella parvula HOM05D002242 ORTHO05D002275 1.6e-06 57.8 255 26.7
Hma1.2p1_0404F.1_g145270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 2.2e-06 57.4 165 37.0
RcHm_v2.0_Chr1g0380431 Rosa chinensis HOM05D002242 ORTHO05D002275 2.2e-06 57.4 289 25.6
Actinidia08657 Actinidia chinensis HOM05D002242 ORTHO05D002275 2.8e-06 57.0 279 26.2
Nitab4.5_0005514g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 2.8e-06 57.0 158 29.7
Peaxi162Scf00740g00136 Petunia axillaris HOM05D002242 ORTHO05D002275 2.8e-06 57.0 173 31.2
Phvul.009G051700 Phaseolus vulgaris HOM05D002242 ORTHO05D002275 2.8e-06 57.0 302 25.8
SGA_v2.0_scaffold232G43549 Striga asiatica HOM05D002242 ORTHO05D002275 3.7e-06 56.6 220 30.9
Hma1.2p1_1587F.1_g292270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 4.8e-06 56.2 165 36.4
Nitab4.5_0007888g0030 Nicotiana tabacum HOM05D002242 ORTHO05D002275 6.3e-06 55.8 158 28.5
Ca_12786_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 8.2e-06 55.5 275 26.2
Medtr7g117695 Medicago truncatula HOM05D002242 ORTHO05D002275 8.2e-06 55.5 214 31.8


User provided reference genes

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