Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 0.0e+00 1630.9 1023 100.0
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 0.0e+00 1127.1 1129 68.8
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 1.3e-303 1046.6 1157 62.3
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.7e-301 1037.3 1035 69.4
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 9.4e-174 615.1 1037 50.8
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 5.4e-145 519.6 1038 41.0
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 6.6e-111 406.4 1176 37.0
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 3.6e-101 374.0 1109 35.0
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 8.1e-101 372.9 1102 36.8
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 4.5e-99 367.1 1111 35.4
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 9.3e-97 359.4 1119 35.0
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 1.6e-96 358.6 1120 35.0
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 7.9e-96 356.3 1114 34.5
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 5.5e-57 227.3 1093 29.7
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 2.4e-52 211.8 886 35.1
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 3.1e-52 211.5 879 34.9
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 1.6e-51 209.1 879 34.8
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 9.1e-44 183.3 869 29.8
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.6e-43 182.6 373 37.8
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 8.5e-42 176.8 1235 26.8
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 7.3e-25 120.6 141 48.9
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 3.1e-23 115.2 338 33.1
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 9.8e-22 110.2 729 28.3
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 6.4e-21 107.5 215 38.1
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 6.4e-21 107.5 241 33.6
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.2e-19 103.2 210 35.7
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.1e-17 96.7 83 50.6
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 1.5e-17 96.3 95 48.4
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 1.9e-17 95.9 117 41.9
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.9e-17 95.9 242 34.3
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 3.3e-17 95.1 117 44.4
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 9.5e-17 93.6 83 49.4
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.6e-16 92.8 88 53.4
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 2.1e-16 92.4 84 52.4
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.8e-16 92.0 91 47.3
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.6e-16 91.7 136 37.5
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 3.6e-16 91.7 86 51.2
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 4.7e-16 91.3 97 44.3
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 4.7e-16 91.3 80 52.5
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 6.2e-16 90.9 122 41.8
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 6.2e-16 90.9 97 44.3
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 6.2e-16 90.9 96 40.6
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 8.0e-16 90.5 93 41.9
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 1.1e-15 90.1 93 43.0
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 1.4e-15 89.7 93 47.3
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 1.4e-15 89.7 81 50.6
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 2.3e-15 89.0 81 50.6
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 2.3e-15 89.0 89 46.1
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 3.1e-15 88.6 80 50.0
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 3.1e-15 88.6 87 46.0
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 4.0e-15 88.2 119 39.5
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 4.0e-15 88.2 264 32.6
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 5.2e-15 87.8 247 27.1
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 5.2e-15 87.8 86 47.7
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 5.2e-15 87.8 86 48.8
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 5.2e-15 87.8 82 48.8
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 6.8e-15 87.4 91 42.9
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 8.9e-15 87.0 97 42.3
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 8.9e-15 87.0 99 39.4
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 1.2e-14 86.7 89 43.8
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.5e-14 86.3 94 47.9
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 1.5e-14 86.3 119 37.0
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 3.4e-14 85.1 97 43.3
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 3.4e-14 85.1 94 41.5
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.4e-14 85.1 86 47.7
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 4.4e-14 84.7 87 43.7
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 5.8e-14 84.3 209 32.1
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 5.8e-14 84.3 147 35.4
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 5.8e-14 84.3 82 41.5
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 7.5e-14 84.0 97 44.3
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 7.5e-14 84.0 87 43.7
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 7.5e-14 84.0 99 41.4
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 9.8e-14 83.6 88 43.2
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 9.8e-14 83.6 194 29.4
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 1.7e-13 82.8 113 42.5
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 1.7e-13 82.8 156 32.7
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 2.9e-13 82.0 81 46.9
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 4.9e-13 81.3 232 28.0
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 6.4e-13 80.9 89 46.1
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.4e-12 79.7 170 36.5
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 2.4e-12 79.0 147 36.7
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 5.4e-12 77.8 123 33.3
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 7.0e-12 77.4 89 39.3
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 9.2e-12 77.0 370 24.9
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 1.2e-11 76.6 86 44.2
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 1.6e-11 76.3 80 48.8
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 1.6e-11 76.3 80 48.8
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 1.6e-11 76.3 88 39.8
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 2.7e-11 75.5 86 39.5
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 6.0e-11 74.3 86 40.7
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 6.0e-11 74.3 94 38.3
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.0e-10 73.6 99 34.3
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 1.0e-10 73.6 154 33.8
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 1.0e-10 73.6 89 40.4
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 1.3e-10 73.2 87 36.8
BcaC04g22710 Brassica carinata HOM05D008497 ORTHO05D027096 1.3e-10 73.2 148 44.6
BolC9t54519H Brassica oleracea HOM05D008497 ORTHO05D027096 1.3e-10 73.2 148 44.6
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 1.7e-10 72.8 170 30.6
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.3e-10 72.4 223 26.9
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 2.3e-10 72.4 234 28.2
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 3.0e-10 72.0 145 29.7
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 3.9e-10 71.6 99 33.3
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 6.6e-10 70.9 166 27.7
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 6.6e-10 70.9 81 38.3
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 6.6e-10 70.9 81 38.3
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 6.6e-10 70.9 152 32.2
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 8.6e-10 70.5 215 28.4
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 1.1e-09 70.1 81 42.0
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 1.1e-09 70.1 81 40.7
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.5e-09 69.7 57 50.9
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 1.9e-09 69.3 93 37.6
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 1.9e-09 69.3 81 40.7
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 1.9e-09 69.3 78 38.5
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 2.5e-09 68.9 205 27.8
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 3.3e-09 68.6 80 38.8
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 3.3e-09 68.6 81 39.5
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 4.3e-09 68.2 141 29.8
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 4.3e-09 68.2 81 39.5
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 4.3e-09 68.2 460 22.8
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 5.6e-09 67.8 86 43.0
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 5.6e-09 67.8 86 41.9
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 5.6e-09 67.8 86 34.9
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 7.3e-09 67.4 163 28.8
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 7.3e-09 67.4 154 29.2
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 1.2e-08 66.6 221 29.4
FvH4_4g25060 Fragaria vesca HOM05D005863 ORTHO05D017031 1.2e-08 66.6 98 38.8
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 1.6e-08 66.2 207 29.0
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 1.6e-08 66.2 396 25.5
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 1.6e-08 66.2 86 39.5
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 1.6e-08 66.2 81 39.5
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 1.6e-08 66.2 91 39.6
Aa31sc26G90 Aethionema arabicum HOM05D005863 ORTHO05D003355 2.1e-08 65.9 144 28.5
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 2.1e-08 65.9 92 35.9
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 2.1e-08 65.9 81 37.0
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 2.1e-08 65.9 86 41.9
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 2.1e-08 65.9 86 41.9
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 2.1e-08 65.9 223 29.1
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 2.1e-08 65.9 81 38.3
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 2.8e-08 65.5 98 36.7
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 3.6e-08 65.1 105 39.0
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 3.6e-08 65.1 81 38.3
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 6.2e-08 64.3 143 29.4
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 6.2e-08 64.3 222 25.7
Aa31sc46G40 Aethionema arabicum HOM05D005863 ORTHO05D003355 8.1e-08 63.9 170 28.2
CARHR174360 Cardamine hirsuta HOM05D005863 ORTHO05D003355 8.1e-08 63.9 60 51.7
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 8.1e-08 63.9 86 40.7
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 8.1e-08 63.9 81 37.0
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 8.1e-08 63.9 81 37.0
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 8.1e-08 63.9 81 38.3
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 1.1e-07 63.5 81 37.0
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 1.4e-07 63.2 82 32.9
arahy.Tifrunner.gnm1.ann1.1NC23U Arachis hypogaea HOM05D015529 ORTHO05D015409 1.4e-07 63.2 67 44.8
arahy.Tifrunner.gnm1.ann1.VN6XRW Arachis hypogaea HOM05D015529 ORTHO05D015409 1.4e-07 63.2 67 44.8
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.4e-07 63.2 71 42.3
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.4e-07 63.2 71 42.3
A07p05110 Brassica napus HOM05D008497 ORTHO05D003355 1.8e-07 62.8 287 33.4
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 1.8e-07 62.8 711 23.2
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.8e-07 62.8 81 37.0
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 1.8e-07 62.8 101 34.7
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 1.8e-07 62.8 100 33.0
Thhalv10028182m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.3e-07 62.4 129 30.2
Sp7g05240 Schrenkiella parvula HOM05D008497 ORTHO05D003355 2.3e-07 62.4 101 46.5
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 3.1e-07 62.0 92 33.7
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 3.1e-07 62.0 194 27.8
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 4.0e-07 61.6 78 41.0
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 4.0e-07 61.6 235 27.2
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 5.2e-07 61.2 84 31.0
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 8.9e-07 60.5 225 26.7
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 8.9e-07 60.5 69 37.7
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 8.9e-07 60.5 78 33.3
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 1.2e-06 60.1 185 30.3
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.2e-06 60.1 120 32.5
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 1.5e-06 59.7 117 29.9
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 1.5e-06 59.7 87 36.8
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 1.5e-06 59.7 92 33.7
CAN.G650.29 Capsicum annuum HOM05D012928 ORTHO05D003355 2.6e-06 58.9 216 25.0
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 3.4e-06 58.5 77 35.1
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 4.4e-06 58.2 189 28.0
PSO478G3985 Papaver somniferum HOM05D040514 ORTHO05D003355 5.8e-06 57.8 54 42.6
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 9.9e-06 57.0 215 29.3


User provided reference genes

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