Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.7e-162 574.3 315 100.0
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-83 314.3 300 66.3
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.3e-78 296.6 318 62.3
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 4.5e-34 149.4 336 39.3
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-29 134.8 330 36.7
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 9.1e-27 125.2 323 35.9
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.9e-25 120.2 167 47.3
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.4e-22 111.3 170 41.8
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.1e-21 108.2 166 42.8
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.5e-21 107.8 229 34.5
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 3.3e-21 106.7 249 35.7
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 4.4e-21 106.3 298 34.6
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.4e-21 105.5 241 33.6
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 6.3e-20 102.4 152 42.1
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.0e-19 99.0 311 32.2
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 4.5e-18 96.3 343 30.9
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.7e-17 94.4 161 39.8
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 2.5e-16 90.5 294 33.0
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 3.2e-16 90.1 316 34.5
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 2.1e-15 87.4 107 43.0
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 6.1e-15 85.9 93 47.3
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 1.0e-14 85.1 188 31.9
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 1.0e-14 85.1 94 48.9
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 3.0e-14 83.6 107 43.0
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 3.0e-14 83.6 81 53.1
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 4.0e-14 83.2 103 46.6
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 6.7e-14 82.4 99 46.5
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 6.7e-14 82.4 96 44.8
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 8.8e-14 82.0 95 45.3
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 8.8e-14 82.0 83 51.8
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.2e-13 81.6 120 40.0
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 1.2e-13 81.6 96 44.8
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 1.5e-13 81.3 165 35.8
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 1.5e-13 81.3 165 35.8
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.5e-13 81.3 89 47.2
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.5e-13 81.3 97 44.3
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 2.0e-13 80.9 99 44.4
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 2.0e-13 80.9 309 28.8
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 3.3e-13 80.1 205 33.7
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 4.4e-13 79.7 206 33.5
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 4.4e-13 79.7 82 47.6
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 5.7e-13 79.3 96 41.7
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 5.7e-13 79.3 86 46.5
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 5.7e-13 79.3 93 45.2
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 7.5e-13 79.0 100 44.0
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 9.7e-13 78.6 108 39.8
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 9.7e-13 78.6 165 35.2
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 1.3e-12 78.2 282 31.9
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 2.2e-12 77.4 86 45.3
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.2e-12 77.4 99 41.4
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 2.2e-12 77.4 81 45.7
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 2.2e-12 77.4 128 39.8
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 3.7e-12 76.6 148 34.5
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 4.8e-12 76.3 92 46.7
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 4.8e-12 76.3 92 46.7
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 6.3e-12 75.9 207 33.3
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 6.3e-12 75.9 85 48.2
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 6.3e-12 75.9 86 44.2
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 8.2e-12 75.5 184 31.5
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 8.2e-12 75.5 86 41.9
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 1.1e-11 75.1 75 44.0
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.1e-11 75.1 87 42.5
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 1.1e-11 75.1 187 32.1
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.4e-11 74.7 90 44.4
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.4e-11 74.7 90 44.4
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 2.4e-11 73.9 93 40.9
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 2.4e-11 73.9 110 40.0
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 3.1e-11 73.6 86 46.5
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 3.1e-11 73.6 86 43.0
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 3.1e-11 73.6 68 48.5
Aa31sc46G40 Aethionema arabicum HOM05D005863 ORTHO05D003355 9.1e-11 72.0 184 31.0
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 9.1e-11 72.0 348 26.7
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 9.1e-11 72.0 348 26.7
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 9.1e-11 72.0 88 40.9
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 1.2e-10 71.6 274 28.1
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.2e-10 71.6 93 44.1
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.2e-10 71.6 93 44.1
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 1.6e-10 71.2 282 27.7
Thhalv10028182m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.5e-10 70.1 188 28.7
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 4.5e-10 69.7 69 47.8
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 4.5e-10 69.7 97 35.1
Aa31sc26G90 Aethionema arabicum HOM05D005863 ORTHO05D003355 5.9e-10 69.3 166 31.9
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.0e-09 68.6 84 39.3
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 1.0e-09 68.6 68 50.0
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 1.0e-09 68.6 234 29.9
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 1.3e-09 68.2 136 36.0
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.3e-09 68.2 89 41.6
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 2.2e-09 67.4 91 37.4
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 2.2e-09 67.4 355 26.2
CARHR174360 Cardamine hirsuta HOM05D005863 ORTHO05D003355 2.2e-09 67.4 60 50.0
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 2.2e-09 67.4 68 48.5
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.8e-09 66.6 86 39.5
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 3.8e-09 66.6 99 36.4
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 5.0e-09 66.2 139 35.3
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 5.0e-09 66.2 214 29.0
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 5.0e-09 66.2 197 31.0
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 6.5e-09 65.9 62 46.8
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 8.5e-09 65.5 70 45.7
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 1.1e-08 65.1 248 26.2
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 1.5e-08 64.7 292 26.4
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 2.5e-08 63.9 103 38.8
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 2.5e-08 63.9 93 40.9
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 2.5e-08 63.9 203 26.6
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 3.2e-08 63.5 297 26.9
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 4.2e-08 63.2 149 31.5
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 4.2e-08 63.2 225 29.8
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 4.2e-08 63.2 290 25.5
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 7.2e-08 62.4 105 39.0
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 7.2e-08 62.4 105 39.0
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 7.2e-08 62.4 81 44.4
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 9.4e-08 62.0 80 40.0
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 1.2e-07 61.6 75 40.0
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 1.2e-07 61.6 285 28.1
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.6e-07 61.2 77 40.3
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 1.6e-07 61.2 68 45.6
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 2.1e-07 60.8 72 38.9
FvH4_4g25060 Fragaria vesca HOM05D005863 ORTHO05D017031 2.1e-07 60.8 104 35.6
arahy.Tifrunner.gnm1.ann1.VN6XRW Arachis hypogaea HOM05D015529 ORTHO05D015409 2.7e-07 60.5 93 40.9
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 3.6e-07 60.1 103 40.8
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 3.6e-07 60.1 130 35.4
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 4.7e-07 59.7 280 27.1
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 4.7e-07 59.7 68 42.6
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 6.1e-07 59.3 316 27.5
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 6.1e-07 59.3 311 26.4
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 8.0e-07 58.9 306 22.5
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 1.0e-06 58.5 123 32.5
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 1.0e-06 58.5 313 28.1
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 1.0e-06 58.5 68 41.2
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.4e-06 58.2 77 41.6
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 1.4e-06 58.2 298 25.5
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.8e-06 57.8 84 39.3
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 1.8e-06 57.8 68 39.7
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 1.8e-06 57.8 77 39.0
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 2.3e-06 57.4 77 39.0
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 2.3e-06 57.4 197 25.9
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 3.0e-06 57.0 72 43.1
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 4.0e-06 56.6 79 38.0
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 4.0e-06 56.6 72 38.9
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 5.2e-06 56.2 71 36.6
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 5.2e-06 56.2 278 26.6
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 6.8e-06 55.8 148 28.4
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 6.8e-06 55.8 68 41.2
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 6.8e-06 55.8 236 24.2
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 6.8e-06 55.8 72 38.9
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 8.8e-06 55.5 130 32.3
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 8.8e-06 55.5 82 35.4
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 8.8e-06 55.5 120 33.3
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 8.8e-06 55.5 68 38.2


User provided reference genes

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