Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G00695 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 5.9e-80 300.8 154 100.0
AL7G47090 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 1.5e-51 206.5 129 84.5
AL2G41250 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 1.1e-46 190.3 135 76.3
AT1G80245 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 7.3e-46 187.6 131 76.3
Carub.0007s3329 Capsella rubella HOM05D007217 ORTHO05D009092 3.6e-45 185.3 118 80.5
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 1.3e-42 176.8 118 76.3
CARHR074240 Cardamine hirsuta HOM05D007217 ORTHO05D009092 2.7e-40 169.1 131 71.8
Sp5g35560 Schrenkiella parvula HOM05D007217 ORTHO05D009092 1.1e-36 157.1 135 62.2
Thhalv10019705m.g Eutrema salsugineum HOM05D007217 ORTHO05D009092 8.9e-36 154.1 108 74.1
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 2.2e-34 149.4 116 69.8
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 3.7e-34 148.7 137 61.3
BcaC03g15989 Brassica carinata HOM05D007217 ORTHO05D009092 2.4e-33 146.0 116 68.1
Sp1g21760 Schrenkiella parvula HOM05D007217 ORTHO05D009092 5.4e-33 144.8 138 59.4
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 7.1e-33 144.4 118 66.1
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 7.1e-33 144.4 144 56.9
THA.LOC104808222 Tarenaya hassleriana HOM05D007217 ORTHO05D009092 1.1e-30 137.1 111 64.9
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 1.2e-29 133.7 146 55.5
Atru.chr10.619 Acer truncatum HOM05D007217 ORTHO05D009092 2.4e-25 119.4 112 58.9
MELO3C022720.2 Cucumis melo HOM05D007217 ORTHO05D009092 7.8e-24 114.4 128 50.0
MELO3C015565.2 Cucumis melo HOM05D007217 ORTHO05D009092 1.3e-23 113.6 127 49.6
Thecc.06G135800 Theobroma cacao HOM05D007217 ORTHO05D009092 1.7e-23 113.2 135 45.9
GSVIVG01019606001 Vitis vinifera HOM05D007217 ORTHO05D009092 2.3e-23 112.8 116 51.7
Ciclev10029535m.g Citrus clementina HOM05D007217 ORTHO05D009092 3.9e-23 112.1 112 51.8
Duzib235G1460 Durio zibethinus HOM05D007217 ORTHO05D009092 6.6e-23 111.3 135 48.9
TWI09G0397 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 2.5e-22 109.4 125 48.0
Cpa.g.sc64.50 Carica papaya HOM05D007217 ORTHO05D009092 4.3e-22 108.6 110 50.0
CsaV3_3G030060 Cucumis sativus L. HOM05D007217 ORTHO05D009092 4.3e-22 108.6 125 48.0
ClCG07G002120 Citrullus lanatus HOM05D007217 ORTHO05D009092 5.6e-22 108.2 125 48.0
CsaV3_4G011770 Cucumis sativus L. HOM05D007217 ORTHO05D009092 9.6e-22 107.5 138 45.7
Ciclev10018165m.g Citrus clementina HOM05D007217 ORTHO05D009092 1.6e-21 106.7 112 50.0
Manes.02G204000 Manihot esculenta HOM05D007217 ORTHO05D009092 3.6e-21 105.5 110 53.6
QL05p062902 Quercus lobata HOM05D007217 ORTHO05D009092 3.6e-21 105.5 110 51.8
TWI09G0788 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 3.6e-21 105.5 125 46.4
Gorai.010G170900 Gossypium raimondii HOM05D007217 ORTHO05D009092 4.8e-21 105.1 135 46.7
Dinv20263 Davidia involucrata HOM05D007217 ORTHO05D009092 6.2e-21 104.8 107 53.3
Gohir.D06G146500 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.1e-20 104.0 135 46.7
Sed0002565 Sechium edule HOM05D007217 ORTHO05D009092 1.8e-20 103.2 138 42.8
CiPaw.10G112300 Carya illinoinensis HOM05D007217 ORTHO05D009092 2.4e-20 102.8 110 51.8
Gohir.A06G140100 Gossypium hirsutum HOM05D007217 ORTHO05D009092 3.1e-20 102.4 109 53.2
Rhsim02G0191400 Rhododendron simsii HOM05D007217 ORTHO05D009092 3.1e-20 102.4 107 51.4
FvH4_3g11820 Fragaria vesca HOM05D007217 ORTHO05D009092 4.0e-20 102.1 103 52.4
Lj5g0013157 Lotus japonicus HOM05D007217 ORTHO05D009092 6.9e-20 101.3 103 52.4
Rhsim09G0182200 Rhododendron simsii HOM05D007217 ORTHO05D009092 6.9e-20 101.3 107 50.5
MD05G1258900 Malus domestica HOM05D007217 ORTHO05D009092 1.2e-19 100.5 108 50.9
RcHm_v2.0_Chr5g0019241 Rosa chinensis HOM05D007217 ORTHO05D009092 1.2e-19 100.5 103 54.4
Prupe.4G105800 Prunus persica HOM05D007217 ORTHO05D009092 2.6e-19 99.4 104 51.0
Glyma.15G250400 Glycine max HOM05D007217 ORTHO05D009092 4.4e-19 98.6 103 48.5
Eucgr.E04359 Eucalyptus grandis HOM05D007217 ORTHO05D009092 1.3e-18 97.1 110 47.3
Dinv01436 Davidia involucrata HOM05D007217 ORTHO05D009092 1.7e-18 96.7 92 54.3
Medtr8g011490 Medicago truncatula HOM05D007217 ORTHO05D009092 1.7e-18 96.7 107 48.6
Cc01_g06080 Coffea canephora HOM05D007217 ORTHO05D009092 2.9e-18 95.9 116 48.3
Eucgr.E02022 Eucalyptus grandis HOM05D007217 ORTHO05D009092 3.8e-18 95.5 110 46.4
Lj6g0006317 Lotus japonicus HOM05D007217 ORTHO05D009092 3.8e-18 95.5 103 48.5
Rhsim05G0134700 Rhododendron simsii HOM05D007217 ORTHO05D009092 3.8e-18 95.5 107 47.7
PGSC0003DMG400021318 Solanum tuberosum HOM05D007217 ORTHO05D009092 4.9e-18 95.1 119 47.9
Glyma.08G176100 Glycine max HOM05D007217 ORTHO05D009092 6.4e-18 94.7 97 51.5
Sopen01g003160 Solanum pennellii HOM05D007217 ORTHO05D009092 1.1e-17 94.0 119 47.9
MD10G1238500 Malus domestica HOM05D007217 ORTHO05D009092 1.4e-17 93.6 111 44.1
Peaxi162Scf00586g00008 Petunia axillaris HOM05D007217 ORTHO05D009092 2.4e-17 92.8 119 46.2
EL10Ac9g22805 Beta vulgaris HOM05D007217 ORTHO05D009092 3.2e-17 92.4 109 49.5
Phvul.008G108200 Phaseolus vulgaris HOM05D007217 ORTHO05D009092 3.2e-17 92.4 101 46.5
Solyc01g007180.3 Solanum lycopersicum HOM05D007217 ORTHO05D009092 4.2e-17 92.0 119 47.9
VMungo1383G0797 Vigna mungo HOM05D007217 ORTHO05D009092 4.2e-17 92.0 108 44.4
Lalb_Chr16g0392431 Lupinus albus HOM05D007217 ORTHO05D009092 9.3e-17 90.9 96 50.0
Sc06g0009730 Simmondsia chinensis HOM05D007217 ORTHO05D009092 1.6e-16 90.1 107 48.6
Psat0s5329g0080 Pisum sativum HOM05D007217 ORTHO05D009092 2.1e-16 89.7 108 45.4
Potri.003G149100 Populus trichocarpa HOM05D007217 ORTHO05D009092 4.6e-16 88.6 114 43.9
arahy.Tifrunner.gnm1.ann1.TIKV1F Arachis hypogaea HOM05D007217 ORTHO05D009092 1.3e-15 87.0 99 47.5
Nn7g37971 Nelumbo nucifera HOM05D007217 ORTHO05D009092 1.3e-15 87.0 89 52.8
arahy.Tifrunner.gnm1.ann1.Z0SJI2 Arachis hypogaea HOM05D007217 ORTHO05D009092 2.3e-15 86.3 101 45.5
Rhsim04G0112200 Rhododendron simsii HOM05D007217 ORTHO05D009092 2.3e-15 86.3 138 39.1
DCAR_031675 Daucus carota HOM05D007217 ORTHO05D009092 5.1e-15 85.1 92 48.9
arahy.Tifrunner.gnm1.ann1.3NP1QY Arachis hypogaea HOM05D007217 ORTHO05D009092 6.6e-15 84.7 99 46.5
FAN16G2896 Fragaria x ananassa HOM05D007217 ORTHO05D009092 6.6e-15 84.7 103 47.6
Sabra01G0058500 Salix brachista HOM05D007217 ORTHO05D009092 6.6e-15 84.7 110 42.7
FAN21G1503 Fragaria x ananassa HOM05D007217 ORTHO05D009092 8.7e-15 84.3 103 48.5
DCAR_001337 Daucus carota HOM05D007217 ORTHO05D009092 1.1e-14 84.0 107 44.9
MBI18_g37406_MAGBIO Magnolia biondii HOM05D007217 ORTHO05D009092 1.1e-14 84.0 120 41.7
Gorai.011G051100 Gossypium raimondii HOM05D007217 ORTHO05D009092 3.3e-14 82.4 96 47.9
C02p14430 Brassica napus HOM05D007217 ORTHO05D009092 1.3e-13 80.5 77 57.1
BolC2t07567H Brassica oleracea HOM05D007217 ORTHO05D009092 1.3e-13 80.5 77 57.1
Gohir.D10G048000 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.3e-13 80.5 96 47.9
Gohir.A10G046700 Gossypium hirsutum HOM05D007217 ORTHO05D009092 2.8e-13 79.3 87 50.6
TAR722G0002 Trochodendron aralioides HOM05D007217 ORTHO05D009092 2.4e-12 76.3 105 44.8
Potri.001G081300 Populus trichocarpa HOM05D007217 ORTHO05D009092 3.1e-12 75.9 110 39.1
MSTRG.12451 Avicennia marina HOM05D007217 ORTHO05D009092 4.0e-12 75.5 113 44.2
Psat4g125640 Pisum sativum HOM05D007217 ORTHO05D009092 9.0e-12 74.3 108 39.8
AUR62017567 Chenopodium quinoa HOM05D007217 ORTHO05D009092 2.0e-11 73.2 63 61.9
Migut.N02356 Erythranthe guttata HOM05D007217 ORTHO05D009092 7.6e-11 71.2 112 41.1
SGA_v2.0_scaffold3G01474 Striga asiatica HOM05D007217 ORTHO05D009092 1.7e-10 70.1 113 38.1
Lsat_1_v5_gn_4_36120 Lactuca sativa HOM05D007217 ORTHO05D009092 2.2e-10 69.7 71 49.3
SalBow8G5173 Salvia bowleyana HOM05D007217 ORTHO05D009092 2.9e-10 69.3 74 48.6
COL.COLO4_30930 Corchorus olitorius HOM05D007217 ORTHO05D009092 4.9e-10 68.6 54 66.7
Oeu043290.1 Olea europaea HOM05D007217 ORTHO05D009092 4.9e-10 68.6 119 38.7
GSVIVG01013634001 Vitis vinifera HOM05D007217 ORTHO05D009092 8.4e-10 67.8 83 51.8
HPP92_002517 Vanilla planifolia HOM05D007217 ORTHO05D009092 4.2e-09 65.5 86 44.2
HPP92_002534 Vanilla planifolia HOM05D007217 ORTHO05D009092 4.2e-09 65.5 86 44.2
unitig_749.g13716 Utricularia gibba HOM05D007217 ORTHO05D009092 7.1e-09 64.7 129 37.2
HanXRQChr04g0107331 Helianthus annuus HOM05D007217 ORTHO05D009092 1.2e-08 63.9 122 37.7
Hund24191 Selenicereus undatus HOM05D007217 ORTHO05D009092 1.6e-08 63.5 64 56.2
ATR0763G267 Amborella trichopoda HOM05D007217 ORTHO05D009092 1.8e-07 60.1 70 44.3
CDE03G0339 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 6.7e-07 58.2 83 42.2
Lsat_1_v5_gn_7_8820 Lactuca sativa HOM05D007217 ORTHO05D009092 6.7e-07 58.2 69 43.5
CDE03G0351 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 1.1e-06 57.4 83 43.4
Nitab4.5_0004758g0070 Nicotiana tabacum HOM05D007217 ORTHO05D009092 4.3e-06 55.5 127 33.9
Nitab4.5_0002858g0010 Nicotiana tabacum HOM05D007217 ORTHO05D009092 5.6e-06 55.1 90 40.0


User provided reference genes

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